Gcaud8469.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8469.t1
Unique Name	Gcaud8469.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	589

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1692_length_8986_cov_4.234626	contig	NODE_1692_length_8986_cov_4.234626:4216..5982 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8469	Gcaud8469	Gracilaria caudata M_176_S67 male	gene	NODE_1692_length_8986_cov_4.234626 4216..5982 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8469.t1.stop1	Gcaud8469.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1692_length_8986_cov_4.234626 4216..4218 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8469.t1.CDS1	Gcaud8469.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1692_length_8986_cov_4.234626 4216..5982 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8469.t1.exon1	Gcaud8469.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1692_length_8986_cov_4.234626 4216..5982 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8469.t1.start1	Gcaud8469.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1692_length_8986_cov_4.234626 5980..5982 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8469.t1	Gcaud8469.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1692_length_8986_cov_4.234626 4216..5982 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1692_length_8986_cov_4.234626:4216..5982-
coding sequence from alignment at NODE_1692_length_8986_cov_4.234626:4216..5982-

mRNA sequence

>Gcaud8469.t1 ID=Gcaud8469.t1|Name=Gcaud8469.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=589bp
MTTTTSDAPPLPPTKAKRELVIPSPTKPTTLPSPTKTVWPAPPPSTPVGN
WVLDQHSFAPKRDYFIAYCAGLSRRRITDNLMWFRFPNVTDSKKQRVAVH
YSRLAWVGGPLAELVASSAAKKSEALGNDVAMGDGAADADGAHSDDKDGK
DRDMDDGAAGDTISKPSADTIDKSVTVDEDPDHPYRRPDPYDLSEHDTPR
TFAIVIKFLYCEEIRFNYLTFDELVSLATTAHRWHLTDLYHATFAYVMDQ
DLLAGGLGIRTFLPLVAHEETPESFRRYFCIAVGHHFDVLFPRLRAVKEA
NPSSTPMLWKTIFKQKMMSHVLHCVSLYSPGLYDEYLLDVILRYYERQSD
ASDDQLLGMLSQLSWDDIDVSGVFGSEGVSKFWSPRAIRLAALASYAPQT
AALEVRIPWNIPLQRLLKQQVWSFQTEHVPCGPYVCYLHVRKGNGREVSL
FVHIWNRENKPLKDDARHEIVRVKCRATEINCLCDSSKQWSDSSHGFLEN
LRFEGKLERYPGLGWSQFLEEKRLDEWRHAHGENCGLAITTVLQFVNPVR
QFEGPARRSAPRTLSPGRLQTPIQKKRSGSRMKLRESR*

spliced messenger RNA

>Gcaud8469.t1 ID=Gcaud8469.t1|Name=Gcaud8469.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at NODE_1692_length_8986_cov_4.234626:4216..5982- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACCACCACATCCGACGCACCGCCACTCCCGCCCACGAAGGCGAA
GCGCGAGCTGGTCATACCGTCTCCGACCAAGCCAACGACGCTGCCGTCGC
CCACCAAGACCGTATGGCCGGCGCCTCCCCCGTCCACGCCCGTCGGCAAT
TGGGTGCTAGATCAACACTCGTTCGCCCCCAAACGTGACTATTTCATCGC
GTACTGTGCCGGCTTGTCTCGTCGAAGAATCACTGACAACCTCATGTGGT
TTCGATTTCCCAACGTGACTGACAGCAAGAAGCAGCGCGTTGCTGTGCAT
TACTCCCGACTTGCTTGGGTGGGTGGTCCGCTTGCCGAGCTTGTTGCTTC
CTCCGCAGCCAAGAAATCTGAAGCGCTTGGAAATGATGTTGCCATGGGGG
ACGGTGCTGCTGATGCCGATGGAGCGCACAGTGACGATAAGGACGGTAAA
GATCGCGATATGGATGATGGTGCGGCCGGTGACACCATCAGCAAACCGAG
CGCGGACACCATTGACAAATCCGTCACCGTTGATGAGGACCCGGACCATC
CCTACCGTCGTCCAGATCCATACGATCTTTCCGAACACGACACGCCGCGT
ACTTTTGCCATCGTGATCAAGTTTCTTTATTGCGAAGAGATTCGATTCAA
CTATCTCACATTTGATGAATTGGTCTCACTCGCTACCACCGCTCATCGAT
GGCATCTCACAGATTTGTATCATGCCACTTTTGCGTATGTAATGGATCAG
GATTTACTGGCAGGTGGGTTGGGTATCAGAACATTTCTTCCTTTGGTAGC
GCACGAAGAGACGCCCGAATCTTTTCGACGCTACTTTTGTATCGCTGTGG
GACATCACTTCGACGTTTTATTCCCGCGACTTCGCGCCGTCAAGGAAGCG
AATCCGAGCAGTACACCGATGTTATGGAAGACCATTTTTAAACAGAAGAT
GATGAGTCATGTGTTGCATTGCGTTTCGTTGTACTCACCTGGATTGTACG
ATGAGTATCTTCTTGATGTGATTCTCAGGTATTATGAGCGGCAGAGCGAT
GCTAGCGATGACCAGTTGTTGGGGATGCTGAGCCAGTTGTCCTGGGATGA
TATTGATGTCAGTGGCGTGTTTGGTAGTGAAGGAGTTAGCAAGTTTTGGA
GTCCACGTGCGATTCGTCTGGCTGCGCTTGCTTCGTATGCGCCACAAACT
GCAGCGCTTGAGGTACGCATTCCGTGGAATATCCCATTGCAACGGCTGCT
CAAGCAACAGGTGTGGAGCTTCCAAACAGAACATGTACCATGCGGTCCTT
ATGTTTGCTATCTTCATGTGCGCAAGGGGAACGGAAGAGAAGTTTCATTG
TTTGTGCATATATGGAACCGAGAGAACAAACCTCTGAAGGATGATGCGCG
TCATGAGATTGTTCGCGTGAAATGTCGGGCGACGGAAATTAATTGCCTGT
GTGATAGTTCGAAGCAATGGAGTGATTCATCGCATGGATTCTTGGAGAAC
TTGAGATTTGAGGGCAAGCTTGAGCGATATCCTGGGTTGGGATGGAGCCA
GTTTTTGGAGGAGAAGCGATTGGATGAATGGCGTCATGCTCACGGTGAGA
ATTGTGGACTGGCTATAACGACGGTGTTACAGTTTGTTAATCCGGTCCGA
CAGTTTGAGGGTCCAGCCAGACGAAGTGCTCCTAGGACACTCAGTCCTGG
GCGATTGCAGACCCCCATTCAGAAGAAACGCAGCGGCAGTAGAATGAAGC
TGCGTGAATCGAGATAA

protein sequence of Gcaud8469.t1

>Gcaud8469.t1 ID=Gcaud8469.t1|Name=Gcaud8469.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=589bp
MTTTTSDAPPLPPTKAKRELVIPSPTKPTTLPSPTKTVWPAPPPSTPVGN
WVLDQHSFAPKRDYFIAYCAGLSRRRITDNLMWFRFPNVTDSKKQRVAVH
YSRLAWVGGPLAELVASSAAKKSEALGNDVAMGDGAADADGAHSDDKDGK
DRDMDDGAAGDTISKPSADTIDKSVTVDEDPDHPYRRPDPYDLSEHDTPR
TFAIVIKFLYCEEIRFNYLTFDELVSLATTAHRWHLTDLYHATFAYVMDQ
DLLAGGLGIRTFLPLVAHEETPESFRRYFCIAVGHHFDVLFPRLRAVKEA
NPSSTPMLWKTIFKQKMMSHVLHCVSLYSPGLYDEYLLDVILRYYERQSD
ASDDQLLGMLSQLSWDDIDVSGVFGSEGVSKFWSPRAIRLAALASYAPQT
AALEVRIPWNIPLQRLLKQQVWSFQTEHVPCGPYVCYLHVRKGNGREVSL
FVHIWNRENKPLKDDARHEIVRVKCRATEINCLCDSSKQWSDSSHGFLEN
LRFEGKLERYPGLGWSQFLEEKRLDEWRHAHGENCGLAITTVLQFVNPVR
QFEGPARRSAPRTLSPGRLQTPIQKKRSGSRMKLRESR*

mRNA from alignment at NODE_1692_length_8986_cov_4.234626:4216..5982-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8469.t1 ID=Gcaud8469.t1|Name=Gcaud8469.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at NODE_1692_length_8986_cov_4.234626:4216..5982- (Gracilaria caudata M_176_S67 male)
ATGACCACCACCACATCCGACGCACCGCCACTCCCGCCCACGAAGGCGAA
GCGCGAGCTGGTCATACCGTCTCCGACCAAGCCAACGACGCTGCCGTCGC
CCACCAAGACCGTATGGCCGGCGCCTCCCCCGTCCACGCCCGTCGGCAAT
TGGGTGCTAGATCAACACTCGTTCGCCCCCAAACGTGACTATTTCATCGC
GTACTGTGCCGGCTTGTCTCGTCGAAGAATCACTGACAACCTCATGTGGT
TTCGATTTCCCAACGTGACTGACAGCAAGAAGCAGCGCGTTGCTGTGCAT
TACTCCCGACTTGCTTGGGTGGGTGGTCCGCTTGCCGAGCTTGTTGCTTC
CTCCGCAGCCAAGAAATCTGAAGCGCTTGGAAATGATGTTGCCATGGGGG
ACGGTGCTGCTGATGCCGATGGAGCGCACAGTGACGATAAGGACGGTAAA
GATCGCGATATGGATGATGGTGCGGCCGGTGACACCATCAGCAAACCGAG
CGCGGACACCATTGACAAATCCGTCACCGTTGATGAGGACCCGGACCATC
CCTACCGTCGTCCAGATCCATACGATCTTTCCGAACACGACACGCCGCGT
ACTTTTGCCATCGTGATCAAGTTTCTTTATTGCGAAGAGATTCGATTCAA
CTATCTCACATTTGATGAATTGGTCTCACTCGCTACCACCGCTCATCGAT
GGCATCTCACAGATTTGTATCATGCCACTTTTGCGTATGTAATGGATCAG
GATTTACTGGCAGGTGGGTTGGGTATCAGAACATTTCTTCCTTTGGTAGC
GCACGAAGAGACGCCCGAATCTTTTCGACGCTACTTTTGTATCGCTGTGG
GACATCACTTCGACGTTTTATTCCCGCGACTTCGCGCCGTCAAGGAAGCG
AATCCGAGCAGTACACCGATGTTATGGAAGACCATTTTTAAACAGAAGAT
GATGAGTCATGTGTTGCATTGCGTTTCGTTGTACTCACCTGGATTGTACG
ATGAGTATCTTCTTGATGTGATTCTCAGGTATTATGAGCGGCAGAGCGAT
GCTAGCGATGACCAGTTGTTGGGGATGCTGAGCCAGTTGTCCTGGGATGA
TATTGATGTCAGTGGCGTGTTTGGTAGTGAAGGAGTTAGCAAGTTTTGGA
GTCCACGTGCGATTCGTCTGGCTGCGCTTGCTTCGTATGCGCCACAAACT
GCAGCGCTTGAGGTACGCATTCCGTGGAATATCCCATTGCAACGGCTGCT
CAAGCAACAGGTGTGGAGCTTCCAAACAGAACATGTACCATGCGGTCCTT
ATGTTTGCTATCTTCATGTGCGCAAGGGGAACGGAAGAGAAGTTTCATTG
TTTGTGCATATATGGAACCGAGAGAACAAACCTCTGAAGGATGATGCGCG
TCATGAGATTGTTCGCGTGAAATGTCGGGCGACGGAAATTAATTGCCTGT
GTGATAGTTCGAAGCAATGGAGTGATTCATCGCATGGATTCTTGGAGAAC
TTGAGATTTGAGGGCAAGCTTGAGCGATATCCTGGGTTGGGATGGAGCCA
GTTTTTGGAGGAGAAGCGATTGGATGAATGGCGTCATGCTCACGGTGAGA
ATTGTGGACTGGCTATAACGACGGTGTTACAGTTTGTTAATCCGGTCCGA
CAGTTTGAGGGTCCAGCCAGACGAAGTGCTCCTAGGACACTCAGTCCTGG
GCGATTGCAGACCCCCATTCAGAAGAAACGCAGCGGCAGTAGAATGAAGC
TGCGTGAATCGAGATAA

Coding sequence (CDS) from alignment at NODE_1692_length_8986_cov_4.234626:4216..5982-

>Gcaud8469.t1 ID=Gcaud8469.t1|Name=Gcaud8469.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1767bp|location=Sequence derived from alignment at NODE_1692_length_8986_cov_4.234626:4216..5982- (Gracilaria caudata M_176_S67 male)
ATGACCACCACCACATCCGACGCACCGCCACTCCCGCCCACGAAGGCGAA
GCGCGAGCTGGTCATACCGTCTCCGACCAAGCCAACGACGCTGCCGTCGC
CCACCAAGACCGTATGGCCGGCGCCTCCCCCGTCCACGCCCGTCGGCAAT
TGGGTGCTAGATCAACACTCGTTCGCCCCCAAACGTGACTATTTCATCGC
GTACTGTGCCGGCTTGTCTCGTCGAAGAATCACTGACAACCTCATGTGGT
TTCGATTTCCCAACGTGACTGACAGCAAGAAGCAGCGCGTTGCTGTGCAT
TACTCCCGACTTGCTTGGGTGGGTGGTCCGCTTGCCGAGCTTGTTGCTTC
CTCCGCAGCCAAGAAATCTGAAGCGCTTGGAAATGATGTTGCCATGGGGG
ACGGTGCTGCTGATGCCGATGGAGCGCACAGTGACGATAAGGACGGTAAA
GATCGCGATATGGATGATGGTGCGGCCGGTGACACCATCAGCAAACCGAG
CGCGGACACCATTGACAAATCCGTCACCGTTGATGAGGACCCGGACCATC
CCTACCGTCGTCCAGATCCATACGATCTTTCCGAACACGACACGCCGCGT
ACTTTTGCCATCGTGATCAAGTTTCTTTATTGCGAAGAGATTCGATTCAA
CTATCTCACATTTGATGAATTGGTCTCACTCGCTACCACCGCTCATCGAT
GGCATCTCACAGATTTGTATCATGCCACTTTTGCGTATGTAATGGATCAG
GATTTACTGGCAGGTGGGTTGGGTATCAGAACATTTCTTCCTTTGGTAGC
GCACGAAGAGACGCCCGAATCTTTTCGACGCTACTTTTGTATCGCTGTGG
GACATCACTTCGACGTTTTATTCCCGCGACTTCGCGCCGTCAAGGAAGCG
AATCCGAGCAGTACACCGATGTTATGGAAGACCATTTTTAAACAGAAGAT
GATGAGTCATGTGTTGCATTGCGTTTCGTTGTACTCACCTGGATTGTACG
ATGAGTATCTTCTTGATGTGATTCTCAGGTATTATGAGCGGCAGAGCGAT
GCTAGCGATGACCAGTTGTTGGGGATGCTGAGCCAGTTGTCCTGGGATGA
TATTGATGTCAGTGGCGTGTTTGGTAGTGAAGGAGTTAGCAAGTTTTGGA
GTCCACGTGCGATTCGTCTGGCTGCGCTTGCTTCGTATGCGCCACAAACT
GCAGCGCTTGAGGTACGCATTCCGTGGAATATCCCATTGCAACGGCTGCT
CAAGCAACAGGTGTGGAGCTTCCAAACAGAACATGTACCATGCGGTCCTT
ATGTTTGCTATCTTCATGTGCGCAAGGGGAACGGAAGAGAAGTTTCATTG
TTTGTGCATATATGGAACCGAGAGAACAAACCTCTGAAGGATGATGCGCG
TCATGAGATTGTTCGCGTGAAATGTCGGGCGACGGAAATTAATTGCCTGT
GTGATAGTTCGAAGCAATGGAGTGATTCATCGCATGGATTCTTGGAGAAC
TTGAGATTTGAGGGCAAGCTTGAGCGATATCCTGGGTTGGGATGGAGCCA
GTTTTTGGAGGAGAAGCGATTGGATGAATGGCGTCATGCTCACGGTGAGA
ATTGTGGACTGGCTATAACGACGGTGTTACAGTTTGTTAATCCGGTCCGA
CAGTTTGAGGGTCCAGCCAGACGAAGTGCTCCTAGGACACTCAGTCCTGG
GCGATTGCAGACCCCCATTCAGAAGAAACGCAGCGGCAGTAGAATGAAGC
TGCGTGAATCGAGATAA