Gcaud8463.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8463.t1
Unique NameGcaud8463.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length108
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_274_length_32647_cov_4.923609contigNODE_274_length_32647_cov_4.923609:23226..23549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707867.1
Max annot lvl2759|Eukaryota
Evalue8.98e-21
EggNOG OGs2E51Z@1|root,2SBWK@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8463Gcaud8463Gracilaria caudata M_176_S67 malegeneNODE_274_length_32647_cov_4.923609 23226..23549 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8463.t1.stop1Gcaud8463.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_274_length_32647_cov_4.923609 23226..23228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8463.t1.CDS1Gcaud8463.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_274_length_32647_cov_4.923609 23226..23549 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8463.t1.exon1Gcaud8463.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_274_length_32647_cov_4.923609 23226..23549 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8463.t1.start1Gcaud8463.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_274_length_32647_cov_4.923609 23547..23549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8463.t1Gcaud8463.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_274_length_32647_cov_4.923609 23226..23549 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8463.t1 ID=Gcaud8463.t1|Name=Gcaud8463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=108bp
MGLGEDGLKEDLAFAQNCIDEGCSVDAVQDVLTRLERRRAVLALEVTQIE
EIMAVLAKENLGGDRNLVAEAMAAAVSIFSKADDDYPAVGQTTNPWTLDP
LKKQPKL*
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spliced messenger RNA

>Gcaud8463.t1 ID=Gcaud8463.t1|Name=Gcaud8463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=324bp|location=Sequence derived from alignment at NODE_274_length_32647_cov_4.923609:23226..23549- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTTGGCGAGGACGGCCTCAAGGAGGACCTGGCGTTCGCGCAGAA
CTGCATCGACGAGGGCTGTTCGGTCGACGCCGTGCAGGACGTGCTTACGC
GTCTGGAGCGTCGTCGAGCCGTGCTGGCGCTCGAGGTCACCCAGATCGAG
GAAATCATGGCCGTGCTGGCCAAGGAGAACCTTGGCGGCGATCGTAACCT
TGTGGCCGAGGCCATGGCTGCCGCCGTCAGCATCTTCTCCAAGGCCGATG
ATGATTACCCGGCTGTGGGACAGACCACCAACCCTTGGACGCTGGATCCG
CTCAAGAAGCAACCGAAGTTGTAG
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protein sequence of Gcaud8463.t1

>Gcaud8463.t1 ID=Gcaud8463.t1|Name=Gcaud8463.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=108bp
MGLGEDGLKEDLAFAQNCIDEGCSVDAVQDVLTRLERRRAVLALEVTQIE
EIMAVLAKENLGGDRNLVAEAMAAAVSIFSKADDDYPAVGQTTNPWTLDP
LKKQPKL*
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mRNA from alignment at NODE_274_length_32647_cov_4.923609:23226..23549-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8463.t1 ID=Gcaud8463.t1|Name=Gcaud8463.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=324bp|location=Sequence derived from alignment at NODE_274_length_32647_cov_4.923609:23226..23549- (Gracilaria caudata M_176_S67 male)
ATGGGGCTTGGCGAGGACGGCCTCAAGGAGGACCTGGCGTTCGCGCAGAA
CTGCATCGACGAGGGCTGTTCGGTCGACGCCGTGCAGGACGTGCTTACGC
GTCTGGAGCGTCGTCGAGCCGTGCTGGCGCTCGAGGTCACCCAGATCGAG
GAAATCATGGCCGTGCTGGCCAAGGAGAACCTTGGCGGCGATCGTAACCT
TGTGGCCGAGGCCATGGCTGCCGCCGTCAGCATCTTCTCCAAGGCCGATG
ATGATTACCCGGCTGTGGGACAGACCACCAACCCTTGGACGCTGGATCCG
CTCAAGAAGCAACCGAAGTTGTAG
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Coding sequence (CDS) from alignment at NODE_274_length_32647_cov_4.923609:23226..23549-

>Gcaud8463.t1 ID=Gcaud8463.t1|Name=Gcaud8463.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=324bp|location=Sequence derived from alignment at NODE_274_length_32647_cov_4.923609:23226..23549- (Gracilaria caudata M_176_S67 male)
ATGGGGCTTGGCGAGGACGGCCTCAAGGAGGACCTGGCGTTCGCGCAGAA
CTGCATCGACGAGGGCTGTTCGGTCGACGCCGTGCAGGACGTGCTTACGC
GTCTGGAGCGTCGTCGAGCCGTGCTGGCGCTCGAGGTCACCCAGATCGAG
GAAATCATGGCCGTGCTGGCCAAGGAGAACCTTGGCGGCGATCGTAACCT
TGTGGCCGAGGCCATGGCTGCCGCCGTCAGCATCTTCTCCAAGGCCGATG
ATGATTACCCGGCTGTGGGACAGACCACCAACCCTTGGACGCTGGATCCG
CTCAAGAAGCAACCGAAGTTGTAG
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