Gcaud8457.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8457.t1
Unique NameGcaud8457.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length14
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_274_length_32647_cov_4.923609contigNODE_274_length_32647_cov_4.923609:752..1483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8457Gcaud8457Gracilaria caudata M_176_S67 malegeneNODE_274_length_32647_cov_4.923609 752..1483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8457.t1Gcaud8457.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_274_length_32647_cov_4.923609 752..1483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8457.t1.CDS1Gcaud8457.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_274_length_32647_cov_4.923609 752..758 +
Gcaud8457.t1.CDS2Gcaud8457.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_274_length_32647_cov_4.923609 856..870 +
Gcaud8457.t1.CDS3Gcaud8457.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_274_length_32647_cov_4.923609 1369..1384 +
Gcaud8457.t1.CDS4Gcaud8457.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_274_length_32647_cov_4.923609 1481..1483 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8457.t1.exon1Gcaud8457.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_274_length_32647_cov_4.923609 752..758 +
Gcaud8457.t1.exon2Gcaud8457.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_274_length_32647_cov_4.923609 856..870 +
Gcaud8457.t1.exon3Gcaud8457.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_274_length_32647_cov_4.923609 1369..1384 +
Gcaud8457.t1.exon4Gcaud8457.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_274_length_32647_cov_4.923609 1481..1483 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8457.t1.intron1Gcaud8457.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_274_length_32647_cov_4.923609 759..855 +
Gcaud8457.t1.intron2Gcaud8457.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_274_length_32647_cov_4.923609 871..1368 +
Gcaud8457.t1.intron3Gcaud8457.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_274_length_32647_cov_4.923609 1385..1480 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8457.t1.stop1Gcaud8457.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_274_length_32647_cov_4.923609 1481..1483 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8457.t1 ID=Gcaud8457.t1|Name=Gcaud8457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=14bp
XGKMALMVPLKVQ*
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spliced messenger RNA

>Gcaud8457.t1 ID=Gcaud8457.t1|Name=Gcaud8457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=41bp|location=Sequence derived from alignment at NODE_274_length_32647_cov_4.923609:752..1483+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ctggcaaaatggccttgatggtgccactcaaagtacaatga
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protein sequence of Gcaud8457.t1

>Gcaud8457.t1 ID=Gcaud8457.t1|Name=Gcaud8457.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=14bp
XGKMALMVPLKVQ*
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mRNA from alignment at NODE_274_length_32647_cov_4.923609:752..1483+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8457.t1 ID=Gcaud8457.t1|Name=Gcaud8457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=732bp|location=Sequence derived from alignment at NODE_274_length_32647_cov_4.923609:752..1483+ (Gracilaria caudata M_176_S67 male)
ctggcaagtacgttgttcaacttCTTCTCCTCCCTCCTGTGCCTCCTCAC
CGTTCTACCGCCACGCTTACATGTCTGACGTCTTCATTCTCATCTGTTAA
ACagaatggccttgatggtgtcctcaaggaccccttgcttcagcaccagt
cctacctcaactggagctgctcctctatgcgtctcttccgtcaaaccggc
agcaccgatttcaacgcattcgtatcctccatgtacgaatgtacaaacaa
atcaactggggaaatcatagatgatcccaactgcaagtgcgacatcggca
ttggcggctggtttcaaactccagctcgttttggcaaagtgaccttcctg
cctccgtttgtgtacgatcgatacgtcgtattcacacacgtttctcaagc
cacagtctccggcagaaatttgttcttcgttcagaccttcgacgtcagat
cttggatttgtattgccgcattattcgtgatgttcactcttctgaaaatt
ctcgaccgcagattccagcctgctcctccatgcccaccgctcccaccctc
cacgagtagagcacgacgttgtgtgcactatctaacgaagagtcgtcgac
cctatcgaataaggaaggccactcaaagtacaagtaagTACTACTATCTT
CTCTATTGCATATGCGTATGTAACGTGTGGCGCTGACGTTCTTTGTATAT
GTACCTATGCTGATTGCGTGCGGgttcagtga
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Coding sequence (CDS) from alignment at NODE_274_length_32647_cov_4.923609:752..1483+

>Gcaud8457.t1 ID=Gcaud8457.t1|Name=Gcaud8457.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=41bp|location=Sequence derived from alignment at NODE_274_length_32647_cov_4.923609:752..1483+ (Gracilaria caudata M_176_S67 male)
ctggcaaaatggccttgatggtgccactcaaagtacaatga
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