Gcaud8448.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8448.t1
Unique NameGcaud8448.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6384_length_1197_cov_5.190778contigNODE_6384_length_1197_cov_5.190778:14..1156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002602881.1
Preferred nameF13A1
PFAMsTransglut_C,Transglut_N,Transglut_core
Max annot lvl33208|Metazoa
KEGG koko:K03917,ko:K05619,ko:K05621
KEGG Pathwayko04610,map04610
GOsGO:0000003,GO:0001533,GO:0002376,GO:0002576,GO:0003674,GO:0003810,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005886,GO:0005911,GO:0005912,GO:0005913,GO:0006464,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007320,GO:0007596,GO:0007599,GO:0007610,GO:0007617,GO:0007618,GO:0007620,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0008544,GO:0009611,GO:0009653,GO:0009887,GO:0009888,GO:0009913,GO:0009987,GO:0010033,GO:0010837,GO:0010838,GO:0012501,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016746,GO:0016755,GO:0018149,GO:0019098,GO:0019221,GO:0019538,GO:0019953,GO:0022414,GO:0023052,GO:0030054,GO:0030141,GO:0030154,GO:0030216,GO:0030855,GO:0031012,GO:0031091,GO:0031093,GO:0031224,GO:0031410,GO:0031424,GO:0031974,GO:0031982,GO:0031983,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0034097,GO:0034774,GO:0036211,GO:0042060,GO:0042127,GO:0042221,GO:0042381,GO:0042628,GO:0043163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043588,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045055,GO:0045087,GO:0045229,GO:0045297,GO:0045787,GO:0046903,GO:0048513,GO:0048518,GO:0048522,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050678,GO:0050679,GO:0050789,GO:0050794,GO:0050817,GO:0050878,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0051726,GO:0060205,GO:0060429,GO:0065007,GO:0065008,GO:0070013,GO:0070161,GO:0070268,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0071944,GO:0072376,GO:0072378,GO:0097708,GO:0099503,GO:0140096,GO:1901564
Evalue5.38e-41
EggNOG OGs2CD5G@1|root,2QQ46@2759|Eukaryota,38DTB@33154|Opisthokonta,3B9AA@33208|Metazoa,3CRPR@33213|Bilateria,487Q2@7711|Chordata
EC2.3.2.13
Descriptionprotein-glutamine gamma-glutamyltransferase activity
COG categoryS
BRITEko00000,ko00001,ko01000,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8448Gcaud8448Gracilaria caudata M_176_S67 malegeneNODE_6384_length_1197_cov_5.190778 14..1156 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8448.t1.stop1Gcaud8448.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_6384_length_1197_cov_5.190778 14..16 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8448.t1.CDS1Gcaud8448.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6384_length_1197_cov_5.190778 14..1156 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8448.t1.exon1Gcaud8448.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6384_length_1197_cov_5.190778 14..1156 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8448.t1.start1Gcaud8448.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_6384_length_1197_cov_5.190778 1154..1156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8448.t1Gcaud8448.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6384_length_1197_cov_5.190778 14..1156 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8448.t1 ID=Gcaud8448.t1|Name=Gcaud8448.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=381bp
MKRPDLVAEERRHGVSLSGWQVLDATPQERSMHLYRLGPAPVAAIKRGIS
LKYDTDFVIGEVNADVLFYWQRQGSVQFDLRGKNTRHVGKNISTKSVGSD
RRNDVTLEYKFAEGSREEREALANRASAGLRALPSSNELSFDLSFPPRVK
VGDAIVVTISACNRGSKAVQVHFSSLYRAIRYTGAAVARVGQDMDDVEIG
PGRTAEFSVKIGAEKYMEYLARDVNTIKFINSAKVSDSDQTWAEECIVRL
YGDDALQISAPNRIEVNEAAQAKLRVVNSFRVALTDVTMRASGEGVLDAT
VIRLGTVEPGASAQADIELDASDVGEHVLVVTLDTNELKDISKSAHVVVE
DNSGLSPWDSFMASLRRRGDRNWDELLSIN*
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spliced messenger RNA

>Gcaud8448.t1 ID=Gcaud8448.t1|Name=Gcaud8448.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_6384_length_1197_cov_5.190778:14..1156- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGCCCGGACCTCGTTGCCGAGGAGCGCCGTCACGGAGTGTCGCT
CAGCGGCTGGCAGGTGCTCGATGCCACGCCGCAGGAGCGCTCCATGCATC
TGTACCGACTTGGACCCGCGCCCGTGGCAGCCATCAAGCGCGGCATCTCG
CTCAAGTACGACACCGATTTTGTGATCGGCGAGGTGAACGCCGATGTGCT
GTTCTACTGGCAGCGACAGGGCTCGGTGCAATTCGATCTGCGCGGGAAGA
ACACGCGACACGTGGGCAAGAACATCAGCACCAAGTCTGTTGGGTCCGAT
CGGCGTAACGACGTGACGCTGGAGTACAAGTTTGCGGAGGGCTCGCGTGA
AGAACGAGAGGCGCTTGCCAACCGCGCGTCCGCCGGCCTCCGTGCGCTTC
CCAGCTCGAACGAACTTTCCTTTGACCTTTCGTTCCCTCCGCGTGTCAAG
GTGGGCGATGCGATTGTCGTCACGATTAGTGCGTGCAACAGAGGATCGAA
GGCAGTCCAAGTGCATTTCAGCAGCCTGTACCGCGCCATTCGCTACACGG
GAGCTGCTGTGGCTCGCGTCGGGCAGGATATGGACGACGTGGAGATCGGG
CCGGGGAGGACGGCGGAGTTTTCCGTGAAGATTGGCGCTGAGAAGTACAT
GGAGTACTTGGCAAGGGACGTGAATACAATCAAGTTCATCAATTCGGCCA
AGGTGAGCGACAGCGACCAGACGTGGGCCGAAGAGTGCATCGTGCGTCTG
TACGGCGACGACGCACTGCAAATCTCGGCGCCGAATCGTATCGAGGTGAA
TGAGGCTGCCCAGGCCAAACTGAGAGTTGTGAACTCGTTCCGCGTGGCTC
TCACAGATGTGACGATGCGTGCTTCGGGAGAGGGCGTGCTTGACGCGACG
GTTATTCGGTTGGGAACAGTTGAGCCGGGAGCAAGTGCACAGGCAGACAT
TGAGCTGGACGCATCGGATGTTGGCGAACACGTGTTGGTGGTGACGCTGG
ACACCAATGAGCTCAAAGACATCTCGAAGAGTGCGCATGTAGTGGTGGAG
GACAACTCTGGGTTATCGCCGTGGGACAGTTTTATGGCCTCGCTGAGAAG
ACGTGGCGATCGTAACTGGGATGAGCTGCTTTCCATAAACTGA
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protein sequence of Gcaud8448.t1

>Gcaud8448.t1 ID=Gcaud8448.t1|Name=Gcaud8448.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=381bp
MKRPDLVAEERRHGVSLSGWQVLDATPQERSMHLYRLGPAPVAAIKRGIS
LKYDTDFVIGEVNADVLFYWQRQGSVQFDLRGKNTRHVGKNISTKSVGSD
RRNDVTLEYKFAEGSREEREALANRASAGLRALPSSNELSFDLSFPPRVK
VGDAIVVTISACNRGSKAVQVHFSSLYRAIRYTGAAVARVGQDMDDVEIG
PGRTAEFSVKIGAEKYMEYLARDVNTIKFINSAKVSDSDQTWAEECIVRL
YGDDALQISAPNRIEVNEAAQAKLRVVNSFRVALTDVTMRASGEGVLDAT
VIRLGTVEPGASAQADIELDASDVGEHVLVVTLDTNELKDISKSAHVVVE
DNSGLSPWDSFMASLRRRGDRNWDELLSIN*
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mRNA from alignment at NODE_6384_length_1197_cov_5.190778:14..1156-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8448.t1 ID=Gcaud8448.t1|Name=Gcaud8448.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_6384_length_1197_cov_5.190778:14..1156- (Gracilaria caudata M_176_S67 male)
ATGAAGCGCCCGGACCTCGTTGCCGAGGAGCGCCGTCACGGAGTGTCGCT
CAGCGGCTGGCAGGTGCTCGATGCCACGCCGCAGGAGCGCTCCATGCATC
TGTACCGACTTGGACCCGCGCCCGTGGCAGCCATCAAGCGCGGCATCTCG
CTCAAGTACGACACCGATTTTGTGATCGGCGAGGTGAACGCCGATGTGCT
GTTCTACTGGCAGCGACAGGGCTCGGTGCAATTCGATCTGCGCGGGAAGA
ACACGCGACACGTGGGCAAGAACATCAGCACCAAGTCTGTTGGGTCCGAT
CGGCGTAACGACGTGACGCTGGAGTACAAGTTTGCGGAGGGCTCGCGTGA
AGAACGAGAGGCGCTTGCCAACCGCGCGTCCGCCGGCCTCCGTGCGCTTC
CCAGCTCGAACGAACTTTCCTTTGACCTTTCGTTCCCTCCGCGTGTCAAG
GTGGGCGATGCGATTGTCGTCACGATTAGTGCGTGCAACAGAGGATCGAA
GGCAGTCCAAGTGCATTTCAGCAGCCTGTACCGCGCCATTCGCTACACGG
GAGCTGCTGTGGCTCGCGTCGGGCAGGATATGGACGACGTGGAGATCGGG
CCGGGGAGGACGGCGGAGTTTTCCGTGAAGATTGGCGCTGAGAAGTACAT
GGAGTACTTGGCAAGGGACGTGAATACAATCAAGTTCATCAATTCGGCCA
AGGTGAGCGACAGCGACCAGACGTGGGCCGAAGAGTGCATCGTGCGTCTG
TACGGCGACGACGCACTGCAAATCTCGGCGCCGAATCGTATCGAGGTGAA
TGAGGCTGCCCAGGCCAAACTGAGAGTTGTGAACTCGTTCCGCGTGGCTC
TCACAGATGTGACGATGCGTGCTTCGGGAGAGGGCGTGCTTGACGCGACG
GTTATTCGGTTGGGAACAGTTGAGCCGGGAGCAAGTGCACAGGCAGACAT
TGAGCTGGACGCATCGGATGTTGGCGAACACGTGTTGGTGGTGACGCTGG
ACACCAATGAGCTCAAAGACATCTCGAAGAGTGCGCATGTAGTGGTGGAG
GACAACTCTGGGTTATCGCCGTGGGACAGTTTTATGGCCTCGCTGAGAAG
ACGTGGCGATCGTAACTGGGATGAGCTGCTTTCCATAAACTGA
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Coding sequence (CDS) from alignment at NODE_6384_length_1197_cov_5.190778:14..1156-

>Gcaud8448.t1 ID=Gcaud8448.t1|Name=Gcaud8448.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1143bp|location=Sequence derived from alignment at NODE_6384_length_1197_cov_5.190778:14..1156- (Gracilaria caudata M_176_S67 male)
ATGAAGCGCCCGGACCTCGTTGCCGAGGAGCGCCGTCACGGAGTGTCGCT
CAGCGGCTGGCAGGTGCTCGATGCCACGCCGCAGGAGCGCTCCATGCATC
TGTACCGACTTGGACCCGCGCCCGTGGCAGCCATCAAGCGCGGCATCTCG
CTCAAGTACGACACCGATTTTGTGATCGGCGAGGTGAACGCCGATGTGCT
GTTCTACTGGCAGCGACAGGGCTCGGTGCAATTCGATCTGCGCGGGAAGA
ACACGCGACACGTGGGCAAGAACATCAGCACCAAGTCTGTTGGGTCCGAT
CGGCGTAACGACGTGACGCTGGAGTACAAGTTTGCGGAGGGCTCGCGTGA
AGAACGAGAGGCGCTTGCCAACCGCGCGTCCGCCGGCCTCCGTGCGCTTC
CCAGCTCGAACGAACTTTCCTTTGACCTTTCGTTCCCTCCGCGTGTCAAG
GTGGGCGATGCGATTGTCGTCACGATTAGTGCGTGCAACAGAGGATCGAA
GGCAGTCCAAGTGCATTTCAGCAGCCTGTACCGCGCCATTCGCTACACGG
GAGCTGCTGTGGCTCGCGTCGGGCAGGATATGGACGACGTGGAGATCGGG
CCGGGGAGGACGGCGGAGTTTTCCGTGAAGATTGGCGCTGAGAAGTACAT
GGAGTACTTGGCAAGGGACGTGAATACAATCAAGTTCATCAATTCGGCCA
AGGTGAGCGACAGCGACCAGACGTGGGCCGAAGAGTGCATCGTGCGTCTG
TACGGCGACGACGCACTGCAAATCTCGGCGCCGAATCGTATCGAGGTGAA
TGAGGCTGCCCAGGCCAAACTGAGAGTTGTGAACTCGTTCCGCGTGGCTC
TCACAGATGTGACGATGCGTGCTTCGGGAGAGGGCGTGCTTGACGCGACG
GTTATTCGGTTGGGAACAGTTGAGCCGGGAGCAAGTGCACAGGCAGACAT
TGAGCTGGACGCATCGGATGTTGGCGAACACGTGTTGGTGGTGACGCTGG
ACACCAATGAGCTCAAAGACATCTCGAAGAGTGCGCATGTAGTGGTGGAG
GACAACTCTGGGTTATCGCCGTGGGACAGTTTTATGGCCTCGCTGAGAAG
ACGTGGCGATCGTAACTGGGATGAGCTGCTTTCCATAAACTGA
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