Gcaud8446.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8446.t1
Unique Name	Gcaud8446.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	225

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1729_length_8761_cov_4.502422	contig	NODE_1729_length_8761_cov_4.502422:5308..5982 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121396.KB892946_gene2911
Max annot lvl	28221\|Deltaproteobacteria
Evalue	5.22e-21
EggNOG OGs	COG4976@1\|root,COG4976@2\|Bacteria,1PFNJ@1224\|Proteobacteria,42ZDY@68525\|delta/epsilon subdivisions,2WUN2@28221\|Deltaproteobacteria
Description	Methionine biosynthesis protein MetW
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8446	Gcaud8446	Gracilaria caudata M_176_S67 male	gene	NODE_1729_length_8761_cov_4.502422 5308..5982 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8446.t1.stop1	Gcaud8446.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1729_length_8761_cov_4.502422 5308..5310 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8446.t1.CDS1	Gcaud8446.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1729_length_8761_cov_4.502422 5308..5982 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8446.t1.exon1	Gcaud8446.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1729_length_8761_cov_4.502422 5308..5982 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8446.t1.start1	Gcaud8446.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1729_length_8761_cov_4.502422 5980..5982 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8446.t1	Gcaud8446.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1729_length_8761_cov_4.502422 5308..5982 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1729_length_8761_cov_4.502422:5308..5982-
coding sequence from alignment at NODE_1729_length_8761_cov_4.502422:5308..5982-

mRNA sequence

>Gcaud8446.t1 ID=Gcaud8446.t1|Name=Gcaud8446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp
MGHVVQEGSTPNEDWFINETHRKTLSPISNEERMKVYDEWAPRYEDDIMN
TEVTFPAIKEKLLSLLQEREKVNKSLRLLDAGCGTGGPAEVYAPALKQLG
MDVHKVGLDFSAGMLALARKKNLYDELVQADISKPLPSSCKLVDVVVSVG
VFFSNHVEAFSLKHLLVCLKPKGYALLTVRTKTYKEEAATYQKVIGESGC
EIVLCEERTQRGPKTCMVLTVQMK*

spliced messenger RNA

>Gcaud8446.t1 ID=Gcaud8446.t1|Name=Gcaud8446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_1729_length_8761_cov_4.502422:5308..5982- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCATGTGGTACAGGAAGGAAGCACACCAAATGAAGACTGGTTCAT
AAACGAGACCCACCGAAAAACGCTGTCACCAATTTCAAATGAAGAACGAA
TGAAGGTGTACGATGAGTGGGCTCCCAGGTACGAAGACGACATTATGAAC
ACTGAAGTGACCTTCCCTGCGATCAAGGAAAAGCTTCTTTCACTACTTCA
AGAGCGTGAGAAGGTGAATAAGAGCTTACGACTCCTTGATGCCGGATGTG
GAACTGGCGGTCCCGCTGAAGTGTATGCACCTGCATTGAAGCAGCTCGGC
ATGGATGTACATAAAGTGGGGCTCGATTTCAGTGCTGGTATGCTCGCGCT
GGCACGGAAGAAAAATCTGTACGACGAGTTGGTGCAGGCAGACATTTCGA
AGCCACTTCCTTCCAGTTGTAAGCTAGTTGATGTGGTTGTATCGGTAGGA
GTATTTTTTAGCAACCATGTGGAGGCGTTCAGTCTGAAGCATTTGTTGGT
GTGCTTGAAACCCAAAGGGTATGCGCTGCTCACTGTGAGAACGAAGACGT
ATAAAGAAGAAGCCGCGACGTATCAGAAGGTCATTGGAGAAAGTGGGTGT
GAAATAGTGCTTTGCGAGGAACGGACGCAGCGCGGACCGAAGACGTGTAT
GGTGTTGACGGTGCAGATGAAGTGA

protein sequence of Gcaud8446.t1

>Gcaud8446.t1 ID=Gcaud8446.t1|Name=Gcaud8446.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=225bp
MGHVVQEGSTPNEDWFINETHRKTLSPISNEERMKVYDEWAPRYEDDIMN
TEVTFPAIKEKLLSLLQEREKVNKSLRLLDAGCGTGGPAEVYAPALKQLG
MDVHKVGLDFSAGMLALARKKNLYDELVQADISKPLPSSCKLVDVVVSVG
VFFSNHVEAFSLKHLLVCLKPKGYALLTVRTKTYKEEAATYQKVIGESGC
EIVLCEERTQRGPKTCMVLTVQMK*

mRNA from alignment at NODE_1729_length_8761_cov_4.502422:5308..5982-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8446.t1 ID=Gcaud8446.t1|Name=Gcaud8446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_1729_length_8761_cov_4.502422:5308..5982- (Gracilaria caudata M_176_S67 male)
ATGGGTCATGTGGTACAGGAAGGAAGCACACCAAATGAAGACTGGTTCAT
AAACGAGACCCACCGAAAAACGCTGTCACCAATTTCAAATGAAGAACGAA
TGAAGGTGTACGATGAGTGGGCTCCCAGGTACGAAGACGACATTATGAAC
ACTGAAGTGACCTTCCCTGCGATCAAGGAAAAGCTTCTTTCACTACTTCA
AGAGCGTGAGAAGGTGAATAAGAGCTTACGACTCCTTGATGCCGGATGTG
GAACTGGCGGTCCCGCTGAAGTGTATGCACCTGCATTGAAGCAGCTCGGC
ATGGATGTACATAAAGTGGGGCTCGATTTCAGTGCTGGTATGCTCGCGCT
GGCACGGAAGAAAAATCTGTACGACGAGTTGGTGCAGGCAGACATTTCGA
AGCCACTTCCTTCCAGTTGTAAGCTAGTTGATGTGGTTGTATCGGTAGGA
GTATTTTTTAGCAACCATGTGGAGGCGTTCAGTCTGAAGCATTTGTTGGT
GTGCTTGAAACCCAAAGGGTATGCGCTGCTCACTGTGAGAACGAAGACGT
ATAAAGAAGAAGCCGCGACGTATCAGAAGGTCATTGGAGAAAGTGGGTGT
GAAATAGTGCTTTGCGAGGAACGGACGCAGCGCGGACCGAAGACGTGTAT
GGTGTTGACGGTGCAGATGAAGTGA

Coding sequence (CDS) from alignment at NODE_1729_length_8761_cov_4.502422:5308..5982-

>Gcaud8446.t1 ID=Gcaud8446.t1|Name=Gcaud8446.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=675bp|location=Sequence derived from alignment at NODE_1729_length_8761_cov_4.502422:5308..5982- (Gracilaria caudata M_176_S67 male)
ATGGGTCATGTGGTACAGGAAGGAAGCACACCAAATGAAGACTGGTTCAT
AAACGAGACCCACCGAAAAACGCTGTCACCAATTTCAAATGAAGAACGAA
TGAAGGTGTACGATGAGTGGGCTCCCAGGTACGAAGACGACATTATGAAC
ACTGAAGTGACCTTCCCTGCGATCAAGGAAAAGCTTCTTTCACTACTTCA
AGAGCGTGAGAAGGTGAATAAGAGCTTACGACTCCTTGATGCCGGATGTG
GAACTGGCGGTCCCGCTGAAGTGTATGCACCTGCATTGAAGCAGCTCGGC
ATGGATGTACATAAAGTGGGGCTCGATTTCAGTGCTGGTATGCTCGCGCT
GGCACGGAAGAAAAATCTGTACGACGAGTTGGTGCAGGCAGACATTTCGA
AGCCACTTCCTTCCAGTTGTAAGCTAGTTGATGTGGTTGTATCGGTAGGA
GTATTTTTTAGCAACCATGTGGAGGCGTTCAGTCTGAAGCATTTGTTGGT
GTGCTTGAAACCCAAAGGGTATGCGCTGCTCACTGTGAGAACGAAGACGT
ATAAAGAAGAAGCCGCGACGTATCAGAAGGTCATTGGAGAAAGTGGGTGT
GAAATAGTGCTTTGCGAGGAACGGACGCAGCGCGGACCGAAGACGTGTAT
GGTGTTGACGGTGCAGATGAAGTGA