Gcaud8443.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8443.t1
Unique NameGcaud8443.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1595_length_9579_cov_4.835687contigNODE_1595_length_9579_cov_4.835687:437..934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8443Gcaud8443Gracilaria caudata M_176_S67 malegeneNODE_1595_length_9579_cov_4.835687 437..934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8443.t1.CDS1Gcaud8443.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1595_length_9579_cov_4.835687 437..934 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8443.t1.exon1Gcaud8443.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1595_length_9579_cov_4.835687 437..934 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8443.t1.start1Gcaud8443.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1595_length_9579_cov_4.835687 932..934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8443.t1Gcaud8443.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1595_length_9579_cov_4.835687 437..934 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8443.t1 ID=Gcaud8443.t1|Name=Gcaud8443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=166bp
MSTGQGLAVQSAQSIERVDPVVADEEEEEPVAYMEKDDVNHERGATLKSS
SSSSSEHHSHSQTGLGQTMSDFVEDNEVRRTLAQCMESDDIELQSAQESN
NSTPSIDSDDTLHQLVEDESPQDGDGVSIDSNGHDIEQNRILTSSKLNEF
MTEHMFLLRFPMTHSL
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spliced messenger RNA

>Gcaud8443.t1 ID=Gcaud8443.t1|Name=Gcaud8443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=498bp|location=Sequence derived from alignment at NODE_1595_length_9579_cov_4.835687:437..934- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAACTGGACAAGGATTAGCAGTTCAGTCTGCTCAATCCATTGAGCG
AGTGGATCCTGTGGTTGCTGATGAAGAGGAAGAGGAGCCTGTTGCATATA
TGGAGAAAGATGATGTTAATCACGAGCGTGGAGCCACTTTAAAGTCGAGC
TCTAGTAGTTCATCCGAGCATCATTCCCATTCACAAACAGGTCTTGGTCA
AACTATGTCAGATTTCGTCGAGGATAATGAAGTACGACGGACGCTTGCAC
AATGTATGGAAAGCGACGATATCGAGCTTCAGTCTGCACAAGAAAGTAAT
AACAGTACGCCCAGCATAGATTCTGACGACACATTACATCAACTCGTCGA
AGATGAGAGCCCCCAAGATGGTGATGGCGTATCAATAGACTCCAATGGTC
ACGATATTGAGCAGAACCGTATTCTAACAAGCTCGAAGCTCAATGAGTTC
ATGACAGAACACATGTTTCTGTTACGATTTCCAATGACACATTCTTTG
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protein sequence of Gcaud8443.t1

>Gcaud8443.t1 ID=Gcaud8443.t1|Name=Gcaud8443.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=166bp
MSTGQGLAVQSAQSIERVDPVVADEEEEEPVAYMEKDDVNHERGATLKSS
SSSSSEHHSHSQTGLGQTMSDFVEDNEVRRTLAQCMESDDIELQSAQESN
NSTPSIDSDDTLHQLVEDESPQDGDGVSIDSNGHDIEQNRILTSSKLNEF
MTEHMFLLRFPMTHSL
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mRNA from alignment at NODE_1595_length_9579_cov_4.835687:437..934-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8443.t1 ID=Gcaud8443.t1|Name=Gcaud8443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=498bp|location=Sequence derived from alignment at NODE_1595_length_9579_cov_4.835687:437..934- (Gracilaria caudata M_176_S67 male)
ATGTCAACTGGACAAGGATTAGCAGTTCAGTCTGCTCAATCCATTGAGCG
AGTGGATCCTGTGGTTGCTGATGAAGAGGAAGAGGAGCCTGTTGCATATA
TGGAGAAAGATGATGTTAATCACGAGCGTGGAGCCACTTTAAAGTCGAGC
TCTAGTAGTTCATCCGAGCATCATTCCCATTCACAAACAGGTCTTGGTCA
AACTATGTCAGATTTCGTCGAGGATAATGAAGTACGACGGACGCTTGCAC
AATGTATGGAAAGCGACGATATCGAGCTTCAGTCTGCACAAGAAAGTAAT
AACAGTACGCCCAGCATAGATTCTGACGACACATTACATCAACTCGTCGA
AGATGAGAGCCCCCAAGATGGTGATGGCGTATCAATAGACTCCAATGGTC
ACGATATTGAGCAGAACCGTATTCTAACAAGCTCGAAGCTCAATGAGTTC
ATGACAGAACACATGTTTCTGTTACGATTTCCAATGACACATTCTTTG
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Coding sequence (CDS) from alignment at NODE_1595_length_9579_cov_4.835687:437..934-

>Gcaud8443.t1 ID=Gcaud8443.t1|Name=Gcaud8443.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=498bp|location=Sequence derived from alignment at NODE_1595_length_9579_cov_4.835687:437..934- (Gracilaria caudata M_176_S67 male)
ATGTCAACTGGACAAGGATTAGCAGTTCAGTCTGCTCAATCCATTGAGCG
AGTGGATCCTGTGGTTGCTGATGAAGAGGAAGAGGAGCCTGTTGCATATA
TGGAGAAAGATGATGTTAATCACGAGCGTGGAGCCACTTTAAAGTCGAGC
TCTAGTAGTTCATCCGAGCATCATTCCCATTCACAAACAGGTCTTGGTCA
AACTATGTCAGATTTCGTCGAGGATAATGAAGTACGACGGACGCTTGCAC
AATGTATGGAAAGCGACGATATCGAGCTTCAGTCTGCACAAGAAAGTAAT
AACAGTACGCCCAGCATAGATTCTGACGACACATTACATCAACTCGTCGA
AGATGAGAGCCCCCAAGATGGTGATGGCGTATCAATAGACTCCAATGGTC
ACGATATTGAGCAGAACCGTATTCTAACAAGCTCGAAGCTCAATGAGTTC
ATGACAGAACACATGTTTCTGTTACGATTTCCAATGACACATTCTTTG
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