Gcaud8441.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8441.t1
Unique NameGcaud8441.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length40
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1814_length_8274_cov_5.107173contigNODE_1814_length_8274_cov_5.107173:2477..2690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8441Gcaud8441Gracilaria caudata M_176_S67 malegeneNODE_1814_length_8274_cov_5.107173 2477..2690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8441.t1Gcaud8441.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1814_length_8274_cov_5.107173 2477..2690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8441.t1.CDS1Gcaud8441.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1814_length_8274_cov_5.107173 2477..2542 +
Gcaud8441.t1.CDS2Gcaud8441.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1814_length_8274_cov_5.107173 2639..2690 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8441.t1.exon1Gcaud8441.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1814_length_8274_cov_5.107173 2477..2542 +
Gcaud8441.t1.exon2Gcaud8441.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1814_length_8274_cov_5.107173 2639..2690 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8441.t1.intron1Gcaud8441.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1814_length_8274_cov_5.107173 2543..2638 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8441.t1.stop1Gcaud8441.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1814_length_8274_cov_5.107173 2688..2690 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8441.t1 ID=Gcaud8441.t1|Name=Gcaud8441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=40bp
XKTFCVPLGKDSDMSGYKPNTKRAFTTSSRPVSNPSVAS*
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spliced messenger RNA

>Gcaud8441.t1 ID=Gcaud8441.t1|Name=Gcaud8441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=118bp|location=Sequence derived from alignment at NODE_1814_length_8274_cov_5.107173:2477..2690+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GAAAACTTTTTGCGTCCCGCTTGGGAAGGATTCAGATATGTCGGGCTACA
AACCCAATACAAAACGCGCCTTCACAACCTCTTCCCGTCCTGTCTCAAAC
CCATCGGTTGCATCGTAA
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protein sequence of Gcaud8441.t1

>Gcaud8441.t1 ID=Gcaud8441.t1|Name=Gcaud8441.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=40bp
XKTFCVPLGKDSDMSGYKPNTKRAFTTSSRPVSNPSVAS*
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mRNA from alignment at NODE_1814_length_8274_cov_5.107173:2477..2690+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8441.t1 ID=Gcaud8441.t1|Name=Gcaud8441.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=214bp|location=Sequence derived from alignment at NODE_1814_length_8274_cov_5.107173:2477..2690+ (Gracilaria caudata M_176_S67 male)
GAAAACTTTTTGCGTCCCGCTTGGGAAGGATTCAGATATGTCGGGCTACA
AACCCAATACAAAACGGTAAATGCTCTTCTTCCACACCTTCTTTGAACCT
TCTGCACGCTAAGAACTTTCGTGGAATCAACATTCCTCCTAACCTTGTAC
CATCCCCTGTAGCGCCTTCACAACCTCTTCCCGTCCTGTCTCAAACCCAT
CGGTTGCATCGTAA
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Coding sequence (CDS) from alignment at NODE_1814_length_8274_cov_5.107173:2477..2690+

>Gcaud8441.t1 ID=Gcaud8441.t1|Name=Gcaud8441.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=118bp|location=Sequence derived from alignment at NODE_1814_length_8274_cov_5.107173:2477..2690+ (Gracilaria caudata M_176_S67 male)
GAAAACTTTTTGCGTCCCGCTTGGGAAGGATTCAGATATGTCGGGCTACA
AACCCAATACAAAACGCGCCTTCACAACCTCTTCCCGTCCTGTCTCAAAC
CCATCGGTTGCATCGTAA
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