Gcaud8434.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8434.t1
Unique NameGcaud8434.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2026_length_7155_cov_4.523924contigNODE_2026_length_7155_cov_4.523924:6252..6725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog344747.PM8797T_00814
PFAMsGlyoxalase
Max annot lvl203682|Planctomycetes
KEGG koko:K04750
Evalue2.3e-28
EggNOG OGsCOG2764@1|root,COG2764@2|Bacteria,2IZTY@203682|Planctomycetes
DescriptionGlyoxalase bleomycin resistance protein dioxygenase
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8434Gcaud8434Gracilaria caudata M_176_S67 malegeneNODE_2026_length_7155_cov_4.523924 6252..6725 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8434.t1.start1Gcaud8434.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2026_length_7155_cov_4.523924 6252..6254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8434.t1.CDS1Gcaud8434.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2026_length_7155_cov_4.523924 6252..6725 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8434.t1.exon1Gcaud8434.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2026_length_7155_cov_4.523924 6252..6725 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8434.t1.stop1Gcaud8434.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2026_length_7155_cov_4.523924 6723..6725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8434.t1Gcaud8434.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2026_length_7155_cov_4.523924 6252..6725 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8434.t1 ID=Gcaud8434.t1|Name=Gcaud8434.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=158bp
MSNAIAHPSNPIRPYLTCRDATSAIEFYKQAFGAKETFERWVDPKGKVAH
AELQFGSSTVFIADANEEWGTHAPAEDTKSAVRLFLDVTDIKQTVEMVKK
FGGHLLQDISEVRAYGCRDAMVKDPAGHIWTVSQQVVKPSHEEMEAARVK
FQEKGDY*
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spliced messenger RNA

>Gcaud8434.t1 ID=Gcaud8434.t1|Name=Gcaud8434.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp|location=Sequence derived from alignment at NODE_2026_length_7155_cov_4.523924:6252..6725+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAACGCCATTGCCCATCCGTCGAACCCAATCCGTCCATACCTTAC
CTGCAGAGATGCAACCTCTGCTATCGAATTCTACAAGCAGGCATTTGGAG
CGAAGGAAACTTTCGAACGTTGGGTCGATCCGAAAGGGAAAGTTGCTCAT
GCAGAGCTGCAGTTTGGATCCTCCACTGTGTTCATAGCCGACGCAAATGA
AGAATGGGGCACTCATGCTCCTGCAGAGGACACTAAGAGCGCTGTTCGTC
TGTTCCTCGATGTGACCGACATCAAACAGACAGTAGAGATGGTGAAGAAA
TTTGGAGGTCATTTGTTGCAGGACATCAGCGAAGTTCGTGCTTATGGCTG
CCGTGATGCTATGGTAAAGGATCCGGCTGGACACATCTGGACTGTTTCTC
AGCAAGTCGTGAAACCTTCTCATGAGGAGATGGAGGCCGCTCGCGTCAAG
TTTCAAGAGAAAGGTGATTATTAA
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protein sequence of Gcaud8434.t1

>Gcaud8434.t1 ID=Gcaud8434.t1|Name=Gcaud8434.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=158bp
MSNAIAHPSNPIRPYLTCRDATSAIEFYKQAFGAKETFERWVDPKGKVAH
AELQFGSSTVFIADANEEWGTHAPAEDTKSAVRLFLDVTDIKQTVEMVKK
FGGHLLQDISEVRAYGCRDAMVKDPAGHIWTVSQQVVKPSHEEMEAARVK
FQEKGDY*
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mRNA from alignment at NODE_2026_length_7155_cov_4.523924:6252..6725+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8434.t1 ID=Gcaud8434.t1|Name=Gcaud8434.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp|location=Sequence derived from alignment at NODE_2026_length_7155_cov_4.523924:6252..6725+ (Gracilaria caudata M_176_S67 male)
ATGTCCAACGCCATTGCCCATCCGTCGAACCCAATCCGTCCATACCTTAC
CTGCAGAGATGCAACCTCTGCTATCGAATTCTACAAGCAGGCATTTGGAG
CGAAGGAAACTTTCGAACGTTGGGTCGATCCGAAAGGGAAAGTTGCTCAT
GCAGAGCTGCAGTTTGGATCCTCCACTGTGTTCATAGCCGACGCAAATGA
AGAATGGGGCACTCATGCTCCTGCAGAGGACACTAAGAGCGCTGTTCGTC
TGTTCCTCGATGTGACCGACATCAAACAGACAGTAGAGATGGTGAAGAAA
TTTGGAGGTCATTTGTTGCAGGACATCAGCGAAGTTCGTGCTTATGGCTG
CCGTGATGCTATGGTAAAGGATCCGGCTGGACACATCTGGACTGTTTCTC
AGCAAGTCGTGAAACCTTCTCATGAGGAGATGGAGGCCGCTCGCGTCAAG
TTTCAAGAGAAAGGTGATTATTAA
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Coding sequence (CDS) from alignment at NODE_2026_length_7155_cov_4.523924:6252..6725+

>Gcaud8434.t1 ID=Gcaud8434.t1|Name=Gcaud8434.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=474bp|location=Sequence derived from alignment at NODE_2026_length_7155_cov_4.523924:6252..6725+ (Gracilaria caudata M_176_S67 male)
ATGTCCAACGCCATTGCCCATCCGTCGAACCCAATCCGTCCATACCTTAC
CTGCAGAGATGCAACCTCTGCTATCGAATTCTACAAGCAGGCATTTGGAG
CGAAGGAAACTTTCGAACGTTGGGTCGATCCGAAAGGGAAAGTTGCTCAT
GCAGAGCTGCAGTTTGGATCCTCCACTGTGTTCATAGCCGACGCAAATGA
AGAATGGGGCACTCATGCTCCTGCAGAGGACACTAAGAGCGCTGTTCGTC
TGTTCCTCGATGTGACCGACATCAAACAGACAGTAGAGATGGTGAAGAAA
TTTGGAGGTCATTTGTTGCAGGACATCAGCGAAGTTCGTGCTTATGGCTG
CCGTGATGCTATGGTAAAGGATCCGGCTGGACACATCTGGACTGTTTCTC
AGCAAGTCGTGAAACCTTCTCATGAGGAGATGGAGGCCGCTCGCGTCAAG
TTTCAAGAGAAAGGTGATTATTAA
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