Gcaud8429.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8429.t1
Unique Name	Gcaud8429.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	646

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_248_length_34309_cov_4.396809	contig	NODE_248_length_34309_cov_4.396809:26569..28506 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	27679.XP_003932327.1
Preferred name	SVOP
PFAMs	MFS_1,Sugar_tr
Max annot lvl	33208\|Metazoa
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008021,GO:0012505,GO:0016020,GO:0016021,GO:0030133,GO:0031224,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044425,GO:0044444,GO:0044456,GO:0044464,GO:0045202,GO:0070382,GO:0097458,GO:0097708,GO:0098793,GO:0099503
Evalue	1.43e-98
EggNOG OGs	KOG0253@1\|root,KOG0255@1\|root,KOG0253@2759\|Eukaryota,KOG0255@2759\|Eukaryota,38BRT@33154\|Opisthokonta,3BCKS@33208\|Metazoa,3CUK1@33213\|Bilateria,4819R@7711\|Chordata,493A2@7742\|Vertebrata,3J8N5@40674\|Mammalia,35MZ5@314146\|Euarchontoglires,4MIFU@9443\|Primates
Description	SV2 related protein homolog (rat)
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8429	Gcaud8429	Gracilaria caudata M_176_S67 male	gene	NODE_248_length_34309_cov_4.396809 26569..28506 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8429.t1.start1	Gcaud8429.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_248_length_34309_cov_4.396809 26569..26571 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8429.t1.CDS1	Gcaud8429.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_248_length_34309_cov_4.396809 26569..28506 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8429.t1.exon1	Gcaud8429.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_248_length_34309_cov_4.396809 26569..28506 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8429.t1.stop1	Gcaud8429.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_248_length_34309_cov_4.396809 28504..28506 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8429.t1	Gcaud8429.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_248_length_34309_cov_4.396809 26569..28506 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_248_length_34309_cov_4.396809:26569..28506+
coding sequence from alignment at NODE_248_length_34309_cov_4.396809:26569..28506+

mRNA sequence

>Gcaud8429.t1 ID=Gcaud8429.t1|Name=Gcaud8429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=646bp
MTGTSNLSPSDYAQLEEAFPADTAENGALGSYSVDDAVEATGMGRFQYLL
IALTGLCWTAESMEMLLLSFIKQPLQCAWGISDARAALITTAVGVGMLTG
STFWGLIGDKFGRRTGFILSTAVTFFMGIASALSPNYITIVLTRGAVGFG
IGGVPVSYSLLMEFLPKSQRGSWGMVISIFWSLGAVFEAAVAMAVLPRWG
WRWLIAVSTIPLFLVLILGFMIQESPRWLVARGKLDRAAVVLSRVAAYNV
RPLPEGRLVAAADGLPSKGGALQLVRSGVRSFTFKVFVLWFAAAFTYYGL
VMLQPELIAAENAGRRCTYVRTECEKLLDQSSCEEDKLCIWGKGTSTNGT
GVCEAALTDEAKAVGTARITLTLDTSVVRHPGHEGNETHDEPEPTAAGAT
NLEEKSSSGERSKLQIQKEACANKLTREDFMSTLWASIGEVPGVLIAFAL
LNHIGRRPLIGYSFGITSFTFPLLLACIGRLGETIVFFTARGASSAAFQA
TYLYTNEVYPARVRATAMGVCSSIARVGLIVTPLFAQFLSNVNLSATMWT
YFGVSMAAVLAVIFAPIETTGWKLLERMDELVAVLRGDVRMGDNEGSFDP
FGKEATAPAFVRWLRWNAPIDARSTGNAARSSDDQRRVEDGDVYA*

spliced messenger RNA

>Gcaud8429.t1 ID=Gcaud8429.t1|Name=Gcaud8429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:26569..28506+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGCACGTCCAACCTGTCTCCGAGCGACTATGCCCAGCTCGAAGA
AGCCTTCCCCGCCGACACCGCCGAGAATGGCGCCCTCGGCAGCTACTCCG
TCGACGATGCCGTAGAGGCCACCGGCATGGGGCGTTTCCAGTACCTGCTC
ATTGCGCTCACCGGCCTATGCTGGACCGCAGAGTCCATGGAAATGTTACT
GCTGTCGTTCATCAAGCAGCCCTTGCAGTGCGCCTGGGGCATTTCCGACG
CACGAGCCGCCCTCATCACCACCGCCGTCGGTGTCGGCATGCTTACCGGT
TCCACCTTCTGGGGGTTGATTGGCGACAAGTTTGGACGACGCACCGGCTT
CATCCTGTCTACCGCGGTCACATTCTTTATGGGAATCGCGTCCGCGTTGT
CCCCAAACTACATCACAATTGTCCTCACGCGCGGAGCCGTCGGCTTTGGC
ATCGGTGGCGTCCCAGTATCGTACTCCTTGCTGATGGAGTTTCTTCCAAA
GTCGCAACGAGGATCGTGGGGAATGGTAATATCTATCTTCTGGTCGCTTG
GTGCCGTCTTTGAGGCCGCGGTCGCCATGGCTGTGTTGCCACGGTGGGGC
TGGCGCTGGCTCATCGCAGTATCGACAATTCCACTCTTTCTGGTGTTGAT
ACTCGGCTTCATGATTCAGGAATCTCCGCGCTGGTTGGTGGCTCGCGGCA
AATTGGATCGCGCTGCGGTCGTTCTGTCTCGCGTGGCAGCCTACAATGTG
CGACCATTACCGGAAGGGCGGCTCGTTGCTGCTGCCGATGGTCTGCCTTC
CAAGGGTGGTGCTCTGCAGTTGGTCCGGTCTGGCGTGCGTTCGTTCACAT
TCAAGGTGTTCGTCTTGTGGTTTGCAGCTGCATTTACTTACTACGGGCTG
GTCATGTTGCAACCTGAACTCATCGCGGCAGAAAATGCGGGACGCCGGTG
CACGTACGTGAGAACAGAGTGCGAAAAGTTGCTCGACCAGAGTAGTTGTG
AGGAGGATAAGCTGTGCATATGGGGGAAGGGTACGAGTACGAACGGAACC
GGAGTTTGCGAGGCGGCTTTGACGGACGAAGCCAAAGCTGTTGGCACGGC
GCGAATAACACTGACTCTCGATACAAGCGTTGTGCGACACCCAGGTCATG
AAGGAAATGAGACTCACGATGAGCCGGAGCCCACAGCTGCCGGAGCGACG
AATCTGGAGGAGAAGAGCAGTTCTGGCGAGCGAAGCAAGCTGCAGATTCA
GAAGGAGGCGTGTGCGAACAAGCTGACGCGAGAAGACTTCATGTCTACGC
TGTGGGCTTCGATCGGAGAAGTACCCGGGGTGCTGATTGCCTTTGCGTTG
TTGAACCATATCGGAAGGCGCCCGTTAATCGGGTATTCGTTCGGCATAAC
CAGCTTCACCTTTCCGCTTCTGCTGGCGTGTATCGGGCGACTCGGGGAAA
CGATTGTATTCTTCACGGCGCGGGGAGCTAGCAGCGCTGCCTTTCAAGCG
ACATATTTGTACACGAATGAGGTTTACCCAGCGCGTGTTCGCGCCACTGC
AATGGGAGTGTGTTCCTCGATAGCGCGCGTGGGACTGATAGTGACACCGC
TTTTCGCGCAGTTCTTGTCGAATGTGAACCTGTCAGCGACAATGTGGACA
TATTTTGGGGTCTCAATGGCTGCGGTGCTGGCGGTCATATTTGCGCCGAT
TGAGACTACGGGGTGGAAGTTATTGGAGAGAATGGATGAGCTGGTGGCAG
TGTTGAGGGGGGACGTTCGGATGGGAGATAACGAGGGCAGCTTCGATCCC
TTTGGTAAGGAGGCGACTGCTCCGGCGTTTGTGCGATGGCTGCGGTGGAA
TGCGCCCATCGACGCGCGCTCAACCGGCAACGCCGCGCGGAGCAGTGATG
ATCAGCGGCGCGTTGAGGACGGAGATGTGTATGCGTAG

protein sequence of Gcaud8429.t1

>Gcaud8429.t1 ID=Gcaud8429.t1|Name=Gcaud8429.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=646bp
MTGTSNLSPSDYAQLEEAFPADTAENGALGSYSVDDAVEATGMGRFQYLL
IALTGLCWTAESMEMLLLSFIKQPLQCAWGISDARAALITTAVGVGMLTG
STFWGLIGDKFGRRTGFILSTAVTFFMGIASALSPNYITIVLTRGAVGFG
IGGVPVSYSLLMEFLPKSQRGSWGMVISIFWSLGAVFEAAVAMAVLPRWG
WRWLIAVSTIPLFLVLILGFMIQESPRWLVARGKLDRAAVVLSRVAAYNV
RPLPEGRLVAAADGLPSKGGALQLVRSGVRSFTFKVFVLWFAAAFTYYGL
VMLQPELIAAENAGRRCTYVRTECEKLLDQSSCEEDKLCIWGKGTSTNGT
GVCEAALTDEAKAVGTARITLTLDTSVVRHPGHEGNETHDEPEPTAAGAT
NLEEKSSSGERSKLQIQKEACANKLTREDFMSTLWASIGEVPGVLIAFAL
LNHIGRRPLIGYSFGITSFTFPLLLACIGRLGETIVFFTARGASSAAFQA
TYLYTNEVYPARVRATAMGVCSSIARVGLIVTPLFAQFLSNVNLSATMWT
YFGVSMAAVLAVIFAPIETTGWKLLERMDELVAVLRGDVRMGDNEGSFDP
FGKEATAPAFVRWLRWNAPIDARSTGNAARSSDDQRRVEDGDVYA*

mRNA from alignment at NODE_248_length_34309_cov_4.396809:26569..28506+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8429.t1 ID=Gcaud8429.t1|Name=Gcaud8429.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:26569..28506+ (Gracilaria caudata M_176_S67 male)
ATGACAGGCACGTCCAACCTGTCTCCGAGCGACTATGCCCAGCTCGAAGA
AGCCTTCCCCGCCGACACCGCCGAGAATGGCGCCCTCGGCAGCTACTCCG
TCGACGATGCCGTAGAGGCCACCGGCATGGGGCGTTTCCAGTACCTGCTC
ATTGCGCTCACCGGCCTATGCTGGACCGCAGAGTCCATGGAAATGTTACT
GCTGTCGTTCATCAAGCAGCCCTTGCAGTGCGCCTGGGGCATTTCCGACG
CACGAGCCGCCCTCATCACCACCGCCGTCGGTGTCGGCATGCTTACCGGT
TCCACCTTCTGGGGGTTGATTGGCGACAAGTTTGGACGACGCACCGGCTT
CATCCTGTCTACCGCGGTCACATTCTTTATGGGAATCGCGTCCGCGTTGT
CCCCAAACTACATCACAATTGTCCTCACGCGCGGAGCCGTCGGCTTTGGC
ATCGGTGGCGTCCCAGTATCGTACTCCTTGCTGATGGAGTTTCTTCCAAA
GTCGCAACGAGGATCGTGGGGAATGGTAATATCTATCTTCTGGTCGCTTG
GTGCCGTCTTTGAGGCCGCGGTCGCCATGGCTGTGTTGCCACGGTGGGGC
TGGCGCTGGCTCATCGCAGTATCGACAATTCCACTCTTTCTGGTGTTGAT
ACTCGGCTTCATGATTCAGGAATCTCCGCGCTGGTTGGTGGCTCGCGGCA
AATTGGATCGCGCTGCGGTCGTTCTGTCTCGCGTGGCAGCCTACAATGTG
CGACCATTACCGGAAGGGCGGCTCGTTGCTGCTGCCGATGGTCTGCCTTC
CAAGGGTGGTGCTCTGCAGTTGGTCCGGTCTGGCGTGCGTTCGTTCACAT
TCAAGGTGTTCGTCTTGTGGTTTGCAGCTGCATTTACTTACTACGGGCTG
GTCATGTTGCAACCTGAACTCATCGCGGCAGAAAATGCGGGACGCCGGTG
CACGTACGTGAGAACAGAGTGCGAAAAGTTGCTCGACCAGAGTAGTTGTG
AGGAGGATAAGCTGTGCATATGGGGGAAGGGTACGAGTACGAACGGAACC
GGAGTTTGCGAGGCGGCTTTGACGGACGAAGCCAAAGCTGTTGGCACGGC
GCGAATAACACTGACTCTCGATACAAGCGTTGTGCGACACCCAGGTCATG
AAGGAAATGAGACTCACGATGAGCCGGAGCCCACAGCTGCCGGAGCGACG
AATCTGGAGGAGAAGAGCAGTTCTGGCGAGCGAAGCAAGCTGCAGATTCA
GAAGGAGGCGTGTGCGAACAAGCTGACGCGAGAAGACTTCATGTCTACGC
TGTGGGCTTCGATCGGAGAAGTACCCGGGGTGCTGATTGCCTTTGCGTTG
TTGAACCATATCGGAAGGCGCCCGTTAATCGGGTATTCGTTCGGCATAAC
CAGCTTCACCTTTCCGCTTCTGCTGGCGTGTATCGGGCGACTCGGGGAAA
CGATTGTATTCTTCACGGCGCGGGGAGCTAGCAGCGCTGCCTTTCAAGCG
ACATATTTGTACACGAATGAGGTTTACCCAGCGCGTGTTCGCGCCACTGC
AATGGGAGTGTGTTCCTCGATAGCGCGCGTGGGACTGATAGTGACACCGC
TTTTCGCGCAGTTCTTGTCGAATGTGAACCTGTCAGCGACAATGTGGACA
TATTTTGGGGTCTCAATGGCTGCGGTGCTGGCGGTCATATTTGCGCCGAT
TGAGACTACGGGGTGGAAGTTATTGGAGAGAATGGATGAGCTGGTGGCAG
TGTTGAGGGGGGACGTTCGGATGGGAGATAACGAGGGCAGCTTCGATCCC
TTTGGTAAGGAGGCGACTGCTCCGGCGTTTGTGCGATGGCTGCGGTGGAA
TGCGCCCATCGACGCGCGCTCAACCGGCAACGCCGCGCGGAGCAGTGATG
ATCAGCGGCGCGTTGAGGACGGAGATGTGTATGCGTAG

Coding sequence (CDS) from alignment at NODE_248_length_34309_cov_4.396809:26569..28506+

>Gcaud8429.t1 ID=Gcaud8429.t1|Name=Gcaud8429.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1938bp|location=Sequence derived from alignment at NODE_248_length_34309_cov_4.396809:26569..28506+ (Gracilaria caudata M_176_S67 male)
ATGACAGGCACGTCCAACCTGTCTCCGAGCGACTATGCCCAGCTCGAAGA
AGCCTTCCCCGCCGACACCGCCGAGAATGGCGCCCTCGGCAGCTACTCCG
TCGACGATGCCGTAGAGGCCACCGGCATGGGGCGTTTCCAGTACCTGCTC
ATTGCGCTCACCGGCCTATGCTGGACCGCAGAGTCCATGGAAATGTTACT
GCTGTCGTTCATCAAGCAGCCCTTGCAGTGCGCCTGGGGCATTTCCGACG
CACGAGCCGCCCTCATCACCACCGCCGTCGGTGTCGGCATGCTTACCGGT
TCCACCTTCTGGGGGTTGATTGGCGACAAGTTTGGACGACGCACCGGCTT
CATCCTGTCTACCGCGGTCACATTCTTTATGGGAATCGCGTCCGCGTTGT
CCCCAAACTACATCACAATTGTCCTCACGCGCGGAGCCGTCGGCTTTGGC
ATCGGTGGCGTCCCAGTATCGTACTCCTTGCTGATGGAGTTTCTTCCAAA
GTCGCAACGAGGATCGTGGGGAATGGTAATATCTATCTTCTGGTCGCTTG
GTGCCGTCTTTGAGGCCGCGGTCGCCATGGCTGTGTTGCCACGGTGGGGC
TGGCGCTGGCTCATCGCAGTATCGACAATTCCACTCTTTCTGGTGTTGAT
ACTCGGCTTCATGATTCAGGAATCTCCGCGCTGGTTGGTGGCTCGCGGCA
AATTGGATCGCGCTGCGGTCGTTCTGTCTCGCGTGGCAGCCTACAATGTG
CGACCATTACCGGAAGGGCGGCTCGTTGCTGCTGCCGATGGTCTGCCTTC
CAAGGGTGGTGCTCTGCAGTTGGTCCGGTCTGGCGTGCGTTCGTTCACAT
TCAAGGTGTTCGTCTTGTGGTTTGCAGCTGCATTTACTTACTACGGGCTG
GTCATGTTGCAACCTGAACTCATCGCGGCAGAAAATGCGGGACGCCGGTG
CACGTACGTGAGAACAGAGTGCGAAAAGTTGCTCGACCAGAGTAGTTGTG
AGGAGGATAAGCTGTGCATATGGGGGAAGGGTACGAGTACGAACGGAACC
GGAGTTTGCGAGGCGGCTTTGACGGACGAAGCCAAAGCTGTTGGCACGGC
GCGAATAACACTGACTCTCGATACAAGCGTTGTGCGACACCCAGGTCATG
AAGGAAATGAGACTCACGATGAGCCGGAGCCCACAGCTGCCGGAGCGACG
AATCTGGAGGAGAAGAGCAGTTCTGGCGAGCGAAGCAAGCTGCAGATTCA
GAAGGAGGCGTGTGCGAACAAGCTGACGCGAGAAGACTTCATGTCTACGC
TGTGGGCTTCGATCGGAGAAGTACCCGGGGTGCTGATTGCCTTTGCGTTG
TTGAACCATATCGGAAGGCGCCCGTTAATCGGGTATTCGTTCGGCATAAC
CAGCTTCACCTTTCCGCTTCTGCTGGCGTGTATCGGGCGACTCGGGGAAA
CGATTGTATTCTTCACGGCGCGGGGAGCTAGCAGCGCTGCCTTTCAAGCG
ACATATTTGTACACGAATGAGGTTTACCCAGCGCGTGTTCGCGCCACTGC
AATGGGAGTGTGTTCCTCGATAGCGCGCGTGGGACTGATAGTGACACCGC
TTTTCGCGCAGTTCTTGTCGAATGTGAACCTGTCAGCGACAATGTGGACA
TATTTTGGGGTCTCAATGGCTGCGGTGCTGGCGGTCATATTTGCGCCGAT
TGAGACTACGGGGTGGAAGTTATTGGAGAGAATGGATGAGCTGGTGGCAG
TGTTGAGGGGGGACGTTCGGATGGGAGATAACGAGGGCAGCTTCGATCCC
TTTGGTAAGGAGGCGACTGCTCCGGCGTTTGTGCGATGGCTGCGGTGGAA
TGCGCCCATCGACGCGCGCTCAACCGGCAACGCCGCGCGGAGCAGTGATG
ATCAGCGGCGCGTTGAGGACGGAGATGTGTATGCGTAG