Gcaud8422.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8422.t1
Unique NameGcaud8422.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length246
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4603_length_2136_cov_4.421027contigNODE_4603_length_2136_cov_4.421027:2..738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8422Gcaud8422Gracilaria caudata M_176_S67 malegeneNODE_4603_length_2136_cov_4.421027 2..738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8422.t1.CDS1Gcaud8422.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4603_length_2136_cov_4.421027 2..738 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8422.t1.exon1Gcaud8422.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4603_length_2136_cov_4.421027 2..738 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8422.t1.stop1Gcaud8422.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4603_length_2136_cov_4.421027 736..738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8422.t1Gcaud8422.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4603_length_2136_cov_4.421027 2..738 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8422.t1 ID=Gcaud8422.t1|Name=Gcaud8422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=246bp
XFRVDFDKVYQKPLAIHINFNRDAGEHGKLRFSITPLVEGNGFRFEWAKW
IHSFESGMRVLTYEYEEDDLLCLPATATDTNVDDVATDIRSTAVDGEGDE
SIESNVIGGDWAAMDSVAVMGHDTNGVFSEGTDEDVVTASAGCSCGCKYK
LNTKAKRVFIEDREGAEKFFWEWEGWRPQQAFEEDRFPILHVVQAAEERQ
GRGDQEGREEHGMGIDEHSLPRGGSKVGDNTAPSEVAFSDTDEQV*
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spliced messenger RNA

>Gcaud8422.t1 ID=Gcaud8422.t1|Name=Gcaud8422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=737bp|location=Sequence derived from alignment at NODE_4603_length_2136_cov_4.421027:2..738+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GCTTTCGGGTTGACTTTGATAAGGTGTATCAGAAACCTTTGGCGATACAC
ATTAATTTTAATAGAGATGCTGGAGAGCATGGGAAACTTCGATTCAGTAT
AACTCCTTTGGTGGAAGGAAACGGCTTCAGGTTTGAATGGGCCAAGTGGA
TTCATAGTTTCGAGTCGGGAATGAGGGTTTTGACATACGAGTACGAGGAA
GATGATCTTCTGTGTTTGCCCGCAACCGCGACGGACACTAATGTTGATGA
TGTTGCAACAGACATTCGTTCTACCGCTGTGGACGGTGAAGGGGATGAAT
CAATCGAAAGCAATGTAATTGGAGGAGACTGGGCCGCCATGGACTCAGTT
GCTGTTATGGGGCATGACACAAATGGAGTCTTCTCCGAAGGAACGGATGA
GGATGTAGTAACTGCgtctgcagggtgctcttgtggttgcaagtacaaac
tgaatactaaggccaagcgggtgtttatagaggacagggaaggtgcggag
aagttcttttgggagtgggagggatggagACCGCAGCAGGCATTCGAGGA
AGATAGGTTTCCCATACTGCACGTCGTGCAAGCAGCAGAGGAGAGGCAGG
GACGTGGGGATCAGGAGGGAAGGGAGGAGCACGGTATGGGCATAGATGAA
CATTCACTACCCCGTGGTGGGTCGAAAGTAGGCGACAACACGGCGCCAAG
CGAAGTGGCGTTTAGCGATACAGACGAACAGGTGTAG
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protein sequence of Gcaud8422.t1

>Gcaud8422.t1 ID=Gcaud8422.t1|Name=Gcaud8422.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=246bp
XFRVDFDKVYQKPLAIHINFNRDAGEHGKLRFSITPLVEGNGFRFEWAKW
IHSFESGMRVLTYEYEEDDLLCLPATATDTNVDDVATDIRSTAVDGEGDE
SIESNVIGGDWAAMDSVAVMGHDTNGVFSEGTDEDVVTASAGCSCGCKYK
LNTKAKRVFIEDREGAEKFFWEWEGWRPQQAFEEDRFPILHVVQAAEERQ
GRGDQEGREEHGMGIDEHSLPRGGSKVGDNTAPSEVAFSDTDEQV*
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mRNA from alignment at NODE_4603_length_2136_cov_4.421027:2..738+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8422.t1 ID=Gcaud8422.t1|Name=Gcaud8422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=737bp|location=Sequence derived from alignment at NODE_4603_length_2136_cov_4.421027:2..738+ (Gracilaria caudata M_176_S67 male)
GCTTTCGGGTTGACTTTGATAAGGTGTATCAGAAACCTTTGGCGATACAC
ATTAATTTTAATAGAGATGCTGGAGAGCATGGGAAACTTCGATTCAGTAT
AACTCCTTTGGTGGAAGGAAACGGCTTCAGGTTTGAATGGGCCAAGTGGA
TTCATAGTTTCGAGTCGGGAATGAGGGTTTTGACATACGAGTACGAGGAA
GATGATCTTCTGTGTTTGCCCGCAACCGCGACGGACACTAATGTTGATGA
TGTTGCAACAGACATTCGTTCTACCGCTGTGGACGGTGAAGGGGATGAAT
CAATCGAAAGCAATGTAATTGGAGGAGACTGGGCCGCCATGGACTCAGTT
GCTGTTATGGGGCATGACACAAATGGAGTCTTCTCCGAAGGAACGGATGA
GGATGTAGTAACTGCgtctgcagggtgctcttgtggttgcaagtacaaac
tgaatactaaggccaagcgggtgtttatagaggacagggaaggtgcggag
aagttcttttgggagtgggagggatggagACCGCAGCAGGCATTCGAGGA
AGATAGGTTTCCCATACTGCACGTCGTGCAAGCAGCAGAGGAGAGGCAGG
GACGTGGGGATCAGGAGGGAAGGGAGGAGCACGGTATGGGCATAGATGAA
CATTCACTACCCCGTGGTGGGTCGAAAGTAGGCGACAACACGGCGCCAAG
CGAAGTGGCGTTTAGCGATACAGACGAACAGGTGTAG
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Coding sequence (CDS) from alignment at NODE_4603_length_2136_cov_4.421027:2..738+

>Gcaud8422.t1 ID=Gcaud8422.t1|Name=Gcaud8422.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=737bp|location=Sequence derived from alignment at NODE_4603_length_2136_cov_4.421027:2..738+ (Gracilaria caudata M_176_S67 male)
GCTTTCGGGTTGACTTTGATAAGGTGTATCAGAAACCTTTGGCGATACAC
ATTAATTTTAATAGAGATGCTGGAGAGCATGGGAAACTTCGATTCAGTAT
AACTCCTTTGGTGGAAGGAAACGGCTTCAGGTTTGAATGGGCCAAGTGGA
TTCATAGTTTCGAGTCGGGAATGAGGGTTTTGACATACGAGTACGAGGAA
GATGATCTTCTGTGTTTGCCCGCAACCGCGACGGACACTAATGTTGATGA
TGTTGCAACAGACATTCGTTCTACCGCTGTGGACGGTGAAGGGGATGAAT
CAATCGAAAGCAATGTAATTGGAGGAGACTGGGCCGCCATGGACTCAGTT
GCTGTTATGGGGCATGACACAAATGGAGTCTTCTCCGAAGGAACGGATGA
GGATGTAGTAACTGCgtctgcagggtgctcttgtggttgcaagtacaaac
tgaatactaaggccaagcgggtgtttatagaggacagggaaggtgcggag
aagttcttttgggagtgggagggatggagACCGCAGCAGGCATTCGAGGA
AGATAGGTTTCCCATACTGCACGTCGTGCAAGCAGCAGAGGAGAGGCAGG
GACGTGGGGATCAGGAGGGAAGGGAGGAGCACGGTATGGGCATAGATGAA
CATTCACTACCCCGTGGTGGGTCGAAAGTAGGCGACAACACGGCGCCAAG
CGAAGTGGCGTTTAGCGATACAGACGAACAGGTGTAG
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