Gcaud8387.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8387.t1
Unique Name	Gcaud8387.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	426

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_406_length_26511_cov_4.568963	contig	NODE_406_length_26511_cov_4.568963:17349..18812 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8387	Gcaud8387	Gracilaria caudata M_176_S67 male	gene	NODE_406_length_26511_cov_4.568963 17349..18812 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8387.t1	Gcaud8387.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_406_length_26511_cov_4.568963 17349..18812 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8387.t1.stop1	Gcaud8387.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_406_length_26511_cov_4.568963 17349..17351 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8387.t1.CDS1	Gcaud8387.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 17349..18027 -
Gcaud8387.t1.CDS2	Gcaud8387.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 18116..18167 -
Gcaud8387.t1.CDS3	Gcaud8387.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_406_length_26511_cov_4.568963 18266..18812 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8387.t1.exon1	Gcaud8387.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 17349..18027 -
Gcaud8387.t1.exon2	Gcaud8387.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 18116..18167 -
Gcaud8387.t1.exon3	Gcaud8387.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_406_length_26511_cov_4.568963 18266..18812 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8387.t1.intron1	Gcaud8387.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_406_length_26511_cov_4.568963 18028..18115 -
Gcaud8387.t1.intron2	Gcaud8387.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_406_length_26511_cov_4.568963 18168..18265 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8387.t1.start1	Gcaud8387.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_406_length_26511_cov_4.568963 18810..18812 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_406_length_26511_cov_4.568963:17349..18812-
coding sequence from alignment at NODE_406_length_26511_cov_4.568963:17349..18812-

mRNA sequence

>Gcaud8387.t1 ID=Gcaud8387.t1|Name=Gcaud8387.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=426bp
MSSSSRNSRKVLTTRPTNTPITDIFERLGFRPAYPVSFEAMGQYHDAQPL
IEAIHDSFTASSVLREKEVKDYESRTEKNLMLPLALLSQASAVTNSTPSA
NDLKKQHDEVLISARKRLELLKAQKTVLRELLEEKESNQNRSLSHIAHQQ
QPQVKEVFSRYRSKIAILRRLVGRDIGSVSLDRITIVNAPEVDSCPSFLC
YLEMTNVSMNTLLRDIRSRTATCVKRKLEDVSEDAIKDLSGEVYAYLLSE
NLQRQDAYIETMQACIRVYMLQRLRIHCFQVLVDVVCRKRDMLFDSISRI
KSSWASSENRFRVESETVASKPMDLTGLHFGRLTQSILVDEVESSYFSAL
LRDTSQLAQQLQQNIGARKHWLDSETPGQFDATASGFEGTLASTSSVLEA
LVRHYETLLKETTLTNGSSSKSEVQ*

spliced messenger RNA

>Gcaud8387.t1 ID=Gcaud8387.t1|Name=Gcaud8387.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:17349..18812- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCATCTTCAAGAAATTCGCGGAAAGTTTTGACCACGAGACCCAC
TAACACGCCGATCACGGATATATTTGAACGCCTTGGTTTCAGACCGGCGT
ATCCAGTTTCATTCGAGGCGATGGGGCAGTACCACGATGCTCAACCTCTT
ATTGAAGCTATACATGATTCATTTACGGCTTCATCCGTTCTACGAGAGAA
GGAGGTCAAGGATTACGAATCTCGGACCGAAAAGAATCTGATGCTTCCTC
TTGCGCTTTTGTCTCAGGCGTCTGCCGTCACTAACAGCACACCTTCTGCT
AATGATTTAAAAAAGCAGCATGACGAAGTTCTAATCTCCGCTCGCAAGCG
ATTGGAGCTGTTGAAAGCGCAAAAGACTGTTTTGCGTGAACTTTTGGAAG
AGAAAGAGTCTAACCAAAACCGCTCCTTGAGCCATATCGCACATCAGCAG
CAGCCGCAAGTCAAGGAGGTGTTTTCTCGTTACCGATCAAAAATCGCAAT
ATTGCGGCGCCTAGTAGGTCGAGATATTGGCTCTGTATCTCTGGATAGAA
TCACCATCGTTAATGCCCCCGAGGTTGATTCCTGTCCTTCATTCTTATGT
TATTTAGAAATGACAAACGTCTCGATGAACACGCTTTTGAGAGATATTCG
TTCTCGAACAGCAACTTGTGTAAAGAGAAAACTTGAAGATGTTTCCGAAG
ATGCCATCAAGGATTTGAGTGGTGAAGTGTATGCATATCTTTTATCAGAG
AACCTTCAAAGGCAAGACGCATACATCGAAACAATGCAGGCATGTATCCG
GGTTTATATGCTTCAACGTCTTCGAATCCACTGTTTTCAAGTGCTAGTGG
ACGTTGTCTGTAGAAAGCGGGATATGCTATTTGATTCTATATCGAGAATT
AAGTCATCTTGGGCATCATCTGAGAATCGGTTCAGAGTAGAATCCGAAAC
GGTCGCATCGAAACCTATGGATCTCACAGGATTGCATTTCGGAAGGCTCA
CACAAAGTATTCTCGTGGATGAAGTTGAATCCTCTTATTTTTCTGCTTTG
CTCAGAGATACATCACAACTTGCACAGCAATTGCAGCAGAACATCGGTGC
AAGGAAGCACTGGCTAGATTCCGAAACCCCAGGACAATTTGACGCTACCG
CAAGTGGTTTTGAAGGCACATTAGCTTCGACATCTTCAGTCCTTGAGGCA
CTTGTTCGCCACTATGAAACGCTATTGAAGGAGACAACTTTGACAAACGG
GTCTTCGAGCAAATCCGAGGTCCAGTGA

protein sequence of Gcaud8387.t1

>Gcaud8387.t1 ID=Gcaud8387.t1|Name=Gcaud8387.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=426bp
MSSSSRNSRKVLTTRPTNTPITDIFERLGFRPAYPVSFEAMGQYHDAQPL
IEAIHDSFTASSVLREKEVKDYESRTEKNLMLPLALLSQASAVTNSTPSA
NDLKKQHDEVLISARKRLELLKAQKTVLRELLEEKESNQNRSLSHIAHQQ
QPQVKEVFSRYRSKIAILRRLVGRDIGSVSLDRITIVNAPEVDSCPSFLC
YLEMTNVSMNTLLRDIRSRTATCVKRKLEDVSEDAIKDLSGEVYAYLLSE
NLQRQDAYIETMQACIRVYMLQRLRIHCFQVLVDVVCRKRDMLFDSISRI
KSSWASSENRFRVESETVASKPMDLTGLHFGRLTQSILVDEVESSYFSAL
LRDTSQLAQQLQQNIGARKHWLDSETPGQFDATASGFEGTLASTSSVLEA
LVRHYETLLKETTLTNGSSSKSEVQ*

mRNA from alignment at NODE_406_length_26511_cov_4.568963:17349..18812-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8387.t1 ID=Gcaud8387.t1|Name=Gcaud8387.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:17349..18812- (Gracilaria caudata M_176_S67 male)
ATGTCGTCATCTTCAAGAAATTCGCGGAAAGTTTTGACCACGAGACCCAC
TAACACGCCGATCACGGATATATTTGAACGCCTTGGTTTCAGACCGGCGT
ATCCAGTTTCATTCGAGGCGATGGGGCAGTACCACGATGCTCAACCTCTT
ATTGAAGCTATACATGATTCATTTACGGCTTCATCCGTTCTACGAGAGAA
GGAGGTCAAGGATTACGAATCTCGGACCGAAAAGAATCTGATGCTTCCTC
TTGCGCTTTTGTCTCAGGCGTCTGCCGTCACTAACAGCACACCTTCTGCT
AATGATTTAAAAAAGCAGCATGACGAAGTTCTAATCTCCGCTCGCAAGCG
ATTGGAGCTGTTGAAAGCGCAAAAGACTGTTTTGCGTGAACTTTTGGAAG
AGAAAGAGTCTAACCAAAACCGCTCCTTGAGCCATATCGCACATCAGCAG
CAGCCGCAAGTCAAGGAGGTGTTTTCTCGTTACCGATCAAAAATCGCAAT
ATTGCGGCGCCTAGTAGGTCGAGATATTGGCTCTGTATCTCTGGATAGTG
AGTTGTTGAGCTATCATAAGGCGGAAGAGAAGTACGTCGAACGCGTTGCG
GATCATGCATCAGATGACGCTCAACGATATGCTGAAATCAATCAGGAATC
ACCATCGTTAATGCCCCCGAGGTTGATTCCTGTCCTTCATTCTTATGGTA
AGATATGTGCTCAGCAGACCAATTGTGAAATTCAACTTGCCCGATTTACG
GCGTTCCTAACTTCCTTGAGTGTAAACGACGGCAGTTATTTAGAAATGAC
AAACGTCTCGATGAACACGCTTTTGAGAGATATTCGTTCTCGAACAGCAA
CTTGTGTAAAGAGAAAACTTGAAGATGTTTCCGAAGATGCCATCAAGGAT
TTGAGTGGTGAAGTGTATGCATATCTTTTATCAGAGAACCTTCAAAGGCA
AGACGCATACATCGAAACAATGCAGGCATGTATCCGGGTTTATATGCTTC
AACGTCTTCGAATCCACTGTTTTCAAGTGCTAGTGGACGTTGTCTGTAGA
AAGCGGGATATGCTATTTGATTCTATATCGAGAATTAAGTCATCTTGGGC
ATCATCTGAGAATCGGTTCAGAGTAGAATCCGAAACGGTCGCATCGAAAC
CTATGGATCTCACAGGATTGCATTTCGGAAGGCTCACACAAAGTATTCTC
GTGGATGAAGTTGAATCCTCTTATTTTTCTGCTTTGCTCAGAGATACATC
ACAACTTGCACAGCAATTGCAGCAGAACATCGGTGCAAGGAAGCACTGGC
TAGATTCCGAAACCCCAGGACAATTTGACGCTACCGCAAGTGGTTTTGAA
GGCACATTAGCTTCGACATCTTCAGTCCTTGAGGCACTTGTTCGCCACTA
TGAAACGCTATTGAAGGAGACAACTTTGACAAACGGGTCTTCGAGCAAAT
CCGAGGTCCAGTGA

Coding sequence (CDS) from alignment at NODE_406_length_26511_cov_4.568963:17349..18812-

>Gcaud8387.t1 ID=Gcaud8387.t1|Name=Gcaud8387.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1278bp|location=Sequence derived from alignment at NODE_406_length_26511_cov_4.568963:17349..18812- (Gracilaria caudata M_176_S67 male)
ATGTCGTCATCTTCAAGAAATTCGCGGAAAGTTTTGACCACGAGACCCAC
TAACACGCCGATCACGGATATATTTGAACGCCTTGGTTTCAGACCGGCGT
ATCCAGTTTCATTCGAGGCGATGGGGCAGTACCACGATGCTCAACCTCTT
ATTGAAGCTATACATGATTCATTTACGGCTTCATCCGTTCTACGAGAGAA
GGAGGTCAAGGATTACGAATCTCGGACCGAAAAGAATCTGATGCTTCCTC
TTGCGCTTTTGTCTCAGGCGTCTGCCGTCACTAACAGCACACCTTCTGCT
AATGATTTAAAAAAGCAGCATGACGAAGTTCTAATCTCCGCTCGCAAGCG
ATTGGAGCTGTTGAAAGCGCAAAAGACTGTTTTGCGTGAACTTTTGGAAG
AGAAAGAGTCTAACCAAAACCGCTCCTTGAGCCATATCGCACATCAGCAG
CAGCCGCAAGTCAAGGAGGTGTTTTCTCGTTACCGATCAAAAATCGCAAT
ATTGCGGCGCCTAGTAGGTCGAGATATTGGCTCTGTATCTCTGGATAGAA
TCACCATCGTTAATGCCCCCGAGGTTGATTCCTGTCCTTCATTCTTATGT
TATTTAGAAATGACAAACGTCTCGATGAACACGCTTTTGAGAGATATTCG
TTCTCGAACAGCAACTTGTGTAAAGAGAAAACTTGAAGATGTTTCCGAAG
ATGCCATCAAGGATTTGAGTGGTGAAGTGTATGCATATCTTTTATCAGAG
AACCTTCAAAGGCAAGACGCATACATCGAAACAATGCAGGCATGTATCCG
GGTTTATATGCTTCAACGTCTTCGAATCCACTGTTTTCAAGTGCTAGTGG
ACGTTGTCTGTAGAAAGCGGGATATGCTATTTGATTCTATATCGAGAATT
AAGTCATCTTGGGCATCATCTGAGAATCGGTTCAGAGTAGAATCCGAAAC
GGTCGCATCGAAACCTATGGATCTCACAGGATTGCATTTCGGAAGGCTCA
CACAAAGTATTCTCGTGGATGAAGTTGAATCCTCTTATTTTTCTGCTTTG
CTCAGAGATACATCACAACTTGCACAGCAATTGCAGCAGAACATCGGTGC
AAGGAAGCACTGGCTAGATTCCGAAACCCCAGGACAATTTGACGCTACCG
CAAGTGGTTTTGAAGGCACATTAGCTTCGACATCTTCAGTCCTTGAGGCA
CTTGTTCGCCACTATGAAACGCTATTGAAGGAGACAACTTTGACAAACGG
GTCTTCGAGCAAATCCGAGGTCCAGTGA