Gcaud8369.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8369.t1
Unique Name	Gcaud8369.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	252

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_163_length_42078_cov_4.640103	contig	NODE_163_length_42078_cov_4.640103:37729..38484 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8369	Gcaud8369	Gracilaria caudata M_176_S67 male	gene	NODE_163_length_42078_cov_4.640103 37729..38484 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8369.t1.start1	Gcaud8369.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_163_length_42078_cov_4.640103 37729..37731 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8369.t1.CDS1	Gcaud8369.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_163_length_42078_cov_4.640103 37729..38484 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8369.t1.exon1	Gcaud8369.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_163_length_42078_cov_4.640103 37729..38484 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8369.t1.stop1	Gcaud8369.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_163_length_42078_cov_4.640103 38482..38484 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8369.t1	Gcaud8369.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_163_length_42078_cov_4.640103 37729..38484 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_163_length_42078_cov_4.640103:37729..38484+
coding sequence from alignment at NODE_163_length_42078_cov_4.640103:37729..38484+

mRNA sequence

>Gcaud8369.t1 ID=Gcaud8369.t1|Name=Gcaud8369.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=252bp
MASNETTEPSSNDQDLPRSTKEASASEMETSETEKTPGPLISLFDHAASS
PLIRKVDRKVPAEVRPALSRGVTHTRKVLNSLDEAVVVAKDTLATDEGKE
LASASCAFAKSIIAFIRLLYSSALLAVENRMEVEKSEDGLGERSMRVGRH
VVSKVSTAMNEREEQVKGTCEAHAYSYLRYAMRFLVSVFAVLLNSLAGFK
GPGSSYISPAAKQVVDNLPDDIRKAVTEEGDLSEIIDEFRRTSDAAPTDS
Q*

spliced messenger RNA

>Gcaud8369.t1 ID=Gcaud8369.t1|Name=Gcaud8369.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=756bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:37729..38484+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCGAACGAAACCACCGAACCATCTTCCAACGATCAGGATCTACC
TCGATCAACGAAAGAAGCTTCTGCTTCCGAAATGGAGACTTCGGAAACTG
AGAAAACACCAGGCCCTCTAATATCTCTGTTTGACCACGCGGCATCAAGC
CCTCTCATTCGAAAGGTCGACCGGAAAGTTCCCGCGGAAGTACGTCCTGC
CTTGTCGCGTGGTGTAACTCATACTCGAAAAGTTCTGAACAGCCTGGACG
AAGCCGTAGTTGTTGCGAAAGACACTCTTGCCACTGATGAAGGCAAGGAG
CTAGCATCTGCGTCTTGTGCTTTTGCGAAAAGCATAATTGCATTCATTCG
CCTACTTTATTCTTCAGCTCTTCTCGCTGTGGAGAACAGGATGGAAGTGG
AGAAAAGCGAAGACGGCTTAGGTGAGCGTTCCATGCGCGTTGGTCGCCAT
GTCGTCTCAAAGGTTTCAACTGCAATGAATGAACGGGAGGAACAAGTCAA
AGGAACTTGTGAGGCACACGCTTATTCTTATCTGAGATATGCAATGAGAT
TTCTCGTTTCGGTGTTTGCTGTTCTCCTTAATTCGCTCGCCGGATTCAAG
GGTCCTGGCAGCTCATATATTTCTCCAGCTGCTAAGCAAGTTGTCGATAA
TCTACCCGATGACATCCGCAAGGCTGTTACTGAAGAAGGTGACCTGTCTG
AAATTATTGATGAATTTCGTCGTACCTCTGACGCGGCCCCAACCGATTCA
CAATAA

protein sequence of Gcaud8369.t1

>Gcaud8369.t1 ID=Gcaud8369.t1|Name=Gcaud8369.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=252bp
MASNETTEPSSNDQDLPRSTKEASASEMETSETEKTPGPLISLFDHAASS
PLIRKVDRKVPAEVRPALSRGVTHTRKVLNSLDEAVVVAKDTLATDEGKE
LASASCAFAKSIIAFIRLLYSSALLAVENRMEVEKSEDGLGERSMRVGRH
VVSKVSTAMNEREEQVKGTCEAHAYSYLRYAMRFLVSVFAVLLNSLAGFK
GPGSSYISPAAKQVVDNLPDDIRKAVTEEGDLSEIIDEFRRTSDAAPTDS
Q*

mRNA from alignment at NODE_163_length_42078_cov_4.640103:37729..38484+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8369.t1 ID=Gcaud8369.t1|Name=Gcaud8369.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=756bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:37729..38484+ (Gracilaria caudata M_176_S67 male)
ATGGCATCGAACGAAACCACCGAACCATCTTCCAACGATCAGGATCTACC
TCGATCAACGAAAGAAGCTTCTGCTTCCGAAATGGAGACTTCGGAAACTG
AGAAAACACCAGGCCCTCTAATATCTCTGTTTGACCACGCGGCATCAAGC
CCTCTCATTCGAAAGGTCGACCGGAAAGTTCCCGCGGAAGTACGTCCTGC
CTTGTCGCGTGGTGTAACTCATACTCGAAAAGTTCTGAACAGCCTGGACG
AAGCCGTAGTTGTTGCGAAAGACACTCTTGCCACTGATGAAGGCAAGGAG
CTAGCATCTGCGTCTTGTGCTTTTGCGAAAAGCATAATTGCATTCATTCG
CCTACTTTATTCTTCAGCTCTTCTCGCTGTGGAGAACAGGATGGAAGTGG
AGAAAAGCGAAGACGGCTTAGGTGAGCGTTCCATGCGCGTTGGTCGCCAT
GTCGTCTCAAAGGTTTCAACTGCAATGAATGAACGGGAGGAACAAGTCAA
AGGAACTTGTGAGGCACACGCTTATTCTTATCTGAGATATGCAATGAGAT
TTCTCGTTTCGGTGTTTGCTGTTCTCCTTAATTCGCTCGCCGGATTCAAG
GGTCCTGGCAGCTCATATATTTCTCCAGCTGCTAAGCAAGTTGTCGATAA
TCTACCCGATGACATCCGCAAGGCTGTTACTGAAGAAGGTGACCTGTCTG
AAATTATTGATGAATTTCGTCGTACCTCTGACGCGGCCCCAACCGATTCA
CAATAA

Coding sequence (CDS) from alignment at NODE_163_length_42078_cov_4.640103:37729..38484+

>Gcaud8369.t1 ID=Gcaud8369.t1|Name=Gcaud8369.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=756bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:37729..38484+ (Gracilaria caudata M_176_S67 male)
ATGGCATCGAACGAAACCACCGAACCATCTTCCAACGATCAGGATCTACC
TCGATCAACGAAAGAAGCTTCTGCTTCCGAAATGGAGACTTCGGAAACTG
AGAAAACACCAGGCCCTCTAATATCTCTGTTTGACCACGCGGCATCAAGC
CCTCTCATTCGAAAGGTCGACCGGAAAGTTCCCGCGGAAGTACGTCCTGC
CTTGTCGCGTGGTGTAACTCATACTCGAAAAGTTCTGAACAGCCTGGACG
AAGCCGTAGTTGTTGCGAAAGACACTCTTGCCACTGATGAAGGCAAGGAG
CTAGCATCTGCGTCTTGTGCTTTTGCGAAAAGCATAATTGCATTCATTCG
CCTACTTTATTCTTCAGCTCTTCTCGCTGTGGAGAACAGGATGGAAGTGG
AGAAAAGCGAAGACGGCTTAGGTGAGCGTTCCATGCGCGTTGGTCGCCAT
GTCGTCTCAAAGGTTTCAACTGCAATGAATGAACGGGAGGAACAAGTCAA
AGGAACTTGTGAGGCACACGCTTATTCTTATCTGAGATATGCAATGAGAT
TTCTCGTTTCGGTGTTTGCTGTTCTCCTTAATTCGCTCGCCGGATTCAAG
GGTCCTGGCAGCTCATATATTTCTCCAGCTGCTAAGCAAGTTGTCGATAA
TCTACCCGATGACATCCGCAAGGCTGTTACTGAAGAAGGTGACCTGTCTG
AAATTATTGATGAATTTCGTCGTACCTCTGACGCGGCCCCAACCGATTCA
CAATAA