Gcaud8365.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8365.t1
Unique Name	Gcaud8365.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	728

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_163_length_42078_cov_4.640103	contig	NODE_163_length_42078_cov_4.640103:20514..22697 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8365	Gcaud8365	Gracilaria caudata M_176_S67 male	gene	NODE_163_length_42078_cov_4.640103 20514..22697 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8365.t1.start1	Gcaud8365.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_163_length_42078_cov_4.640103 20514..20516 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8365.t1.CDS1	Gcaud8365.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_163_length_42078_cov_4.640103 20514..22697 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8365.t1.exon1	Gcaud8365.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_163_length_42078_cov_4.640103 20514..22697 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8365.t1.stop1	Gcaud8365.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_163_length_42078_cov_4.640103 22695..22697 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8365.t1	Gcaud8365.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_163_length_42078_cov_4.640103 20514..22697 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_163_length_42078_cov_4.640103:20514..22697+
coding sequence from alignment at NODE_163_length_42078_cov_4.640103:20514..22697+

mRNA sequence

>Gcaud8365.t1 ID=Gcaud8365.t1|Name=Gcaud8365.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=728bp
MDTTGQPKPSVQPTSVQESGANVAPTTFPMTPTRTPEPNSDFATPFDFSS
PVQDDSSGVSPQSTGSEDGRPTGIQFRRFNSDGSLAAMFATPTESPGPLP
DPMGDFFENVGESSPPKTSEIEMDDVPEATEASDDVDGETSSNSQGKETS
FGPVPELSPLVTPSPDILEEDEELPVESGDATENAVENPTESKPRQSVFV
SGPTTASVIFNVGEPPQFSFSSVNDDKPVQENNDEPVEEKNDDDASTSGE
EIASDDKNDEPVKDGNVSEEEVAIEETETSEDELIEASSEPELDIESGGD
VAIGRLQPKSPGRPAPTNNVNPGKVSEVPTSDLPDVNSPSPTSGLSGEDS
NAQEDPQPLDNSPQSISSSPTPPNLEGKENSANADKDMTESFAETSPVAV
LSSVSDMSGNFEDPVDSTEPDFSAEPEASGEVPVPSGEPELLSVALVVRH
PPSFGAQELAEEIRLNSNEFITPDEWEIVTIFQLSQLSKFAASNVSDSDV
EKDASEDGFLSFEVLLETQCTAGVDCETKLEKNKEFIRDGRMDETLAAHD
FSRVSVFLEGELIERSEPLGAIGTSGLGVGVIAGIAVGGIAVISLVVLVA
VVAANMRNGSSTYSSDYDSELEFEDDVGPDHEFPLDQGSFMISNFGGTPR
HSAAMIPWLNDSSAGSGMEYNSRSFISVDSMTPGDANRMSQYRFDETMSS
ASGSVVGEEVSQVAGPEESGSTVYAVQ*

spliced messenger RNA

>Gcaud8365.t1 ID=Gcaud8365.t1|Name=Gcaud8365.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2184bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:20514..22697+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACCACAGGACAGCCAAAGCCATCTGTGCAACCTACTTCTGTACA
GGAGTCAGGTGCAAACGTTGCGCCCACTACATTTCCCATGACGCCAACGA
GAACACCGGAACCCAATTCAGACTTCGCAACACCTTTTGATTTCAGCAGT
CCGGTCCAGGATGATTCTTCTGGGGTTTCTCCACAATCAACCGGGTCGGA
GGACGGAAGACCTACTGGAATCCAGTTCCGAAGGTTCAATTCTGATGGTT
CTCTTGCAGCAATGTTTGCTACTCCGACTGAATCACCAGGACCACTTCCA
GATCCCATGGGTGACTTTTTCGAGAACGTTGGAGAAAGTTCTCCTCCAAA
GACTTCGGAAATCGAAATGGATGATGTTCCAGAGGCAACTGAAGCCAGCG
ACGATGTAGACGGGGAGACTTCATCTAACTCTCAAGGAAAAGAAACATCC
TTCGGCCCAGTGCCGGAGTTGTCTCCTTTAGTCACCCCGTCTCCAGATAT
ATTGGAAGAGGATGAAGAGCTTCCTGTAGAAAGTGGGGACGCCACTGAAA
ATGCCGTCGAGAATCCAACTGAATCCAAACCACGACAATCGGTGTTTGTT
TCCGGACCTACAACTGCATCGGTAATTTTTAATGTAGGAGAACCTCCCCA
GTTTTCGTTTTCGTCTGTCAACGACGATAAACCAGTCCAGGAAAATAATG
ATGAACCAGTCGAAGAAAAGAACGATGACGATGCCAGTACAAGTGGAGAA
GAAATTGCAAGTGACGATAAAAATGACGAACCAGTTAAAGATGGCAATGT
CAGTGAGGAAGAAGTGGCAATTGAGGAAACCGAAACATCTGAGGATGAAC
TCATTGAGGCCTCGTCAGAGCCTGAACTTGATATCGAGAGTGGAGGAGAT
GTTGCAATTGGGCGATTACAACCAAAGAGCCCTGGGCGTCCAGCACCGAC
CAACAATGTAAACCCTGGCAAAGTCTCCGAGGTTCCGACGTCGGATTTGC
CGGATGTGAACTCCCCTTCTCCAACCTCTGGTTTATCCGGTGAGGATTCA
AATGCCCAGGAAGACCCGCAACCACTTGATAATAGTCCGCAGAGCATCTC
GTCTTCACCTACACCTCCGAACCTTGAAGGCAAAGAAAATTCCGCCAACG
CTGACAAAGATATGACAGAGAGTTTCGCAGAGACTTCGCCCGTAGCTGTG
CTATCAAGCGTTTCTGATATGTCTGGAAATTTTGAAGACCCAGTAGACTC
TACAGAACCCGATTTCTCCGCAGAACCTGAAGCATCAGGAGAAGTTCCCG
TTCCGTCTGGAGAACCTGAGCTATTGTCAGTTGCACTGGTCGTAAGACAT
CCACCTTCTTTCGGCGCTCAAGAACTGGCGGAAGAGATCCGTCTCAATTC
AAATGAATTCATCACACCAGATGAATGGGAGATAGTCACAATCTTTCAGC
TCTCGCAACTGTCAAAATTTGCTGCCTCTAACGTAAGTGACTCCGATGTT
GAGAAGGATGCCTCCGAAGACGGCTTCCTCTCCTTTGAGGTTCTTCTGGA
AACTCAGTGCACAGCCGGAGTAGATTGTGAGACAAAGCTGGAGAAAAACA
AGGAATTCATTAGAGATGGCCGCATGGACGAAACTCTGGCTGCGCACGAT
TTCAGTAGAGTTTCAGTATTTCTTGAAGGCGAGTTGATCGAACGGTCTGA
ACCGCTGGGAGCAATCGGAACTTCCGGTCTGGGAGTTGGTGTAATCGCCG
GAATTGCTGTTGGTGGGATTGCGGTTATTTCACTCGTTGTGCTCGTCGCA
GTTGTAGCGGCTAACATGAGGAATGGTTCAAGTACTTATTCCTCAGATTA
TGATTCAGAGCTTGAGTTTGAAGATGACGTCGGACCAGACCATGAATTCC
CTCTTGATCAAGGATCCTTTATGATTAGCAACTTTGGAGGTACTCCTCGT
CACTCAGCGGCGATGATTCCTTGGTTGAATGACTCCTCTGCTGGATCCGG
GATGGAATACAACTCGCGATCCTTTATTTCGGTTGACTCAATGACGCCAG
GTGATGCTAATAGAATGTCACAGTATCGGTTTGACGAGACGATGTCTTCA
GCGTCTGGATCTGTAGTTGGTGAGGAAGTTTCTCAAGTGGCAGGACCAGA
AGAAAGCGGGAGCACAGTGTACGCAGTGCAGTAA

protein sequence of Gcaud8365.t1

>Gcaud8365.t1 ID=Gcaud8365.t1|Name=Gcaud8365.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=728bp
MDTTGQPKPSVQPTSVQESGANVAPTTFPMTPTRTPEPNSDFATPFDFSS
PVQDDSSGVSPQSTGSEDGRPTGIQFRRFNSDGSLAAMFATPTESPGPLP
DPMGDFFENVGESSPPKTSEIEMDDVPEATEASDDVDGETSSNSQGKETS
FGPVPELSPLVTPSPDILEEDEELPVESGDATENAVENPTESKPRQSVFV
SGPTTASVIFNVGEPPQFSFSSVNDDKPVQENNDEPVEEKNDDDASTSGE
EIASDDKNDEPVKDGNVSEEEVAIEETETSEDELIEASSEPELDIESGGD
VAIGRLQPKSPGRPAPTNNVNPGKVSEVPTSDLPDVNSPSPTSGLSGEDS
NAQEDPQPLDNSPQSISSSPTPPNLEGKENSANADKDMTESFAETSPVAV
LSSVSDMSGNFEDPVDSTEPDFSAEPEASGEVPVPSGEPELLSVALVVRH
PPSFGAQELAEEIRLNSNEFITPDEWEIVTIFQLSQLSKFAASNVSDSDV
EKDASEDGFLSFEVLLETQCTAGVDCETKLEKNKEFIRDGRMDETLAAHD
FSRVSVFLEGELIERSEPLGAIGTSGLGVGVIAGIAVGGIAVISLVVLVA
VVAANMRNGSSTYSSDYDSELEFEDDVGPDHEFPLDQGSFMISNFGGTPR
HSAAMIPWLNDSSAGSGMEYNSRSFISVDSMTPGDANRMSQYRFDETMSS
ASGSVVGEEVSQVAGPEESGSTVYAVQ*

mRNA from alignment at NODE_163_length_42078_cov_4.640103:20514..22697+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8365.t1 ID=Gcaud8365.t1|Name=Gcaud8365.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2184bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:20514..22697+ (Gracilaria caudata M_176_S67 male)
ATGGACACCACAGGACAGCCAAAGCCATCTGTGCAACCTACTTCTGTACA
GGAGTCAGGTGCAAACGTTGCGCCCACTACATTTCCCATGACGCCAACGA
GAACACCGGAACCCAATTCAGACTTCGCAACACCTTTTGATTTCAGCAGT
CCGGTCCAGGATGATTCTTCTGGGGTTTCTCCACAATCAACCGGGTCGGA
GGACGGAAGACCTACTGGAATCCAGTTCCGAAGGTTCAATTCTGATGGTT
CTCTTGCAGCAATGTTTGCTACTCCGACTGAATCACCAGGACCACTTCCA
GATCCCATGGGTGACTTTTTCGAGAACGTTGGAGAAAGTTCTCCTCCAAA
GACTTCGGAAATCGAAATGGATGATGTTCCAGAGGCAACTGAAGCCAGCG
ACGATGTAGACGGGGAGACTTCATCTAACTCTCAAGGAAAAGAAACATCC
TTCGGCCCAGTGCCGGAGTTGTCTCCTTTAGTCACCCCGTCTCCAGATAT
ATTGGAAGAGGATGAAGAGCTTCCTGTAGAAAGTGGGGACGCCACTGAAA
ATGCCGTCGAGAATCCAACTGAATCCAAACCACGACAATCGGTGTTTGTT
TCCGGACCTACAACTGCATCGGTAATTTTTAATGTAGGAGAACCTCCCCA
GTTTTCGTTTTCGTCTGTCAACGACGATAAACCAGTCCAGGAAAATAATG
ATGAACCAGTCGAAGAAAAGAACGATGACGATGCCAGTACAAGTGGAGAA
GAAATTGCAAGTGACGATAAAAATGACGAACCAGTTAAAGATGGCAATGT
CAGTGAGGAAGAAGTGGCAATTGAGGAAACCGAAACATCTGAGGATGAAC
TCATTGAGGCCTCGTCAGAGCCTGAACTTGATATCGAGAGTGGAGGAGAT
GTTGCAATTGGGCGATTACAACCAAAGAGCCCTGGGCGTCCAGCACCGAC
CAACAATGTAAACCCTGGCAAAGTCTCCGAGGTTCCGACGTCGGATTTGC
CGGATGTGAACTCCCCTTCTCCAACCTCTGGTTTATCCGGTGAGGATTCA
AATGCCCAGGAAGACCCGCAACCACTTGATAATAGTCCGCAGAGCATCTC
GTCTTCACCTACACCTCCGAACCTTGAAGGCAAAGAAAATTCCGCCAACG
CTGACAAAGATATGACAGAGAGTTTCGCAGAGACTTCGCCCGTAGCTGTG
CTATCAAGCGTTTCTGATATGTCTGGAAATTTTGAAGACCCAGTAGACTC
TACAGAACCCGATTTCTCCGCAGAACCTGAAGCATCAGGAGAAGTTCCCG
TTCCGTCTGGAGAACCTGAGCTATTGTCAGTTGCACTGGTCGTAAGACAT
CCACCTTCTTTCGGCGCTCAAGAACTGGCGGAAGAGATCCGTCTCAATTC
AAATGAATTCATCACACCAGATGAATGGGAGATAGTCACAATCTTTCAGC
TCTCGCAACTGTCAAAATTTGCTGCCTCTAACGTAAGTGACTCCGATGTT
GAGAAGGATGCCTCCGAAGACGGCTTCCTCTCCTTTGAGGTTCTTCTGGA
AACTCAGTGCACAGCCGGAGTAGATTGTGAGACAAAGCTGGAGAAAAACA
AGGAATTCATTAGAGATGGCCGCATGGACGAAACTCTGGCTGCGCACGAT
TTCAGTAGAGTTTCAGTATTTCTTGAAGGCGAGTTGATCGAACGGTCTGA
ACCGCTGGGAGCAATCGGAACTTCCGGTCTGGGAGTTGGTGTAATCGCCG
GAATTGCTGTTGGTGGGATTGCGGTTATTTCACTCGTTGTGCTCGTCGCA
GTTGTAGCGGCTAACATGAGGAATGGTTCAAGTACTTATTCCTCAGATTA
TGATTCAGAGCTTGAGTTTGAAGATGACGTCGGACCAGACCATGAATTCC
CTCTTGATCAAGGATCCTTTATGATTAGCAACTTTGGAGGTACTCCTCGT
CACTCAGCGGCGATGATTCCTTGGTTGAATGACTCCTCTGCTGGATCCGG
GATGGAATACAACTCGCGATCCTTTATTTCGGTTGACTCAATGACGCCAG
GTGATGCTAATAGAATGTCACAGTATCGGTTTGACGAGACGATGTCTTCA
GCGTCTGGATCTGTAGTTGGTGAGGAAGTTTCTCAAGTGGCAGGACCAGA
AGAAAGCGGGAGCACAGTGTACGCAGTGCAGTAA

Coding sequence (CDS) from alignment at NODE_163_length_42078_cov_4.640103:20514..22697+

>Gcaud8365.t1 ID=Gcaud8365.t1|Name=Gcaud8365.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2184bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:20514..22697+ (Gracilaria caudata M_176_S67 male)
ATGGACACCACAGGACAGCCAAAGCCATCTGTGCAACCTACTTCTGTACA
GGAGTCAGGTGCAAACGTTGCGCCCACTACATTTCCCATGACGCCAACGA
GAACACCGGAACCCAATTCAGACTTCGCAACACCTTTTGATTTCAGCAGT
CCGGTCCAGGATGATTCTTCTGGGGTTTCTCCACAATCAACCGGGTCGGA
GGACGGAAGACCTACTGGAATCCAGTTCCGAAGGTTCAATTCTGATGGTT
CTCTTGCAGCAATGTTTGCTACTCCGACTGAATCACCAGGACCACTTCCA
GATCCCATGGGTGACTTTTTCGAGAACGTTGGAGAAAGTTCTCCTCCAAA
GACTTCGGAAATCGAAATGGATGATGTTCCAGAGGCAACTGAAGCCAGCG
ACGATGTAGACGGGGAGACTTCATCTAACTCTCAAGGAAAAGAAACATCC
TTCGGCCCAGTGCCGGAGTTGTCTCCTTTAGTCACCCCGTCTCCAGATAT
ATTGGAAGAGGATGAAGAGCTTCCTGTAGAAAGTGGGGACGCCACTGAAA
ATGCCGTCGAGAATCCAACTGAATCCAAACCACGACAATCGGTGTTTGTT
TCCGGACCTACAACTGCATCGGTAATTTTTAATGTAGGAGAACCTCCCCA
GTTTTCGTTTTCGTCTGTCAACGACGATAAACCAGTCCAGGAAAATAATG
ATGAACCAGTCGAAGAAAAGAACGATGACGATGCCAGTACAAGTGGAGAA
GAAATTGCAAGTGACGATAAAAATGACGAACCAGTTAAAGATGGCAATGT
CAGTGAGGAAGAAGTGGCAATTGAGGAAACCGAAACATCTGAGGATGAAC
TCATTGAGGCCTCGTCAGAGCCTGAACTTGATATCGAGAGTGGAGGAGAT
GTTGCAATTGGGCGATTACAACCAAAGAGCCCTGGGCGTCCAGCACCGAC
CAACAATGTAAACCCTGGCAAAGTCTCCGAGGTTCCGACGTCGGATTTGC
CGGATGTGAACTCCCCTTCTCCAACCTCTGGTTTATCCGGTGAGGATTCA
AATGCCCAGGAAGACCCGCAACCACTTGATAATAGTCCGCAGAGCATCTC
GTCTTCACCTACACCTCCGAACCTTGAAGGCAAAGAAAATTCCGCCAACG
CTGACAAAGATATGACAGAGAGTTTCGCAGAGACTTCGCCCGTAGCTGTG
CTATCAAGCGTTTCTGATATGTCTGGAAATTTTGAAGACCCAGTAGACTC
TACAGAACCCGATTTCTCCGCAGAACCTGAAGCATCAGGAGAAGTTCCCG
TTCCGTCTGGAGAACCTGAGCTATTGTCAGTTGCACTGGTCGTAAGACAT
CCACCTTCTTTCGGCGCTCAAGAACTGGCGGAAGAGATCCGTCTCAATTC
AAATGAATTCATCACACCAGATGAATGGGAGATAGTCACAATCTTTCAGC
TCTCGCAACTGTCAAAATTTGCTGCCTCTAACGTAAGTGACTCCGATGTT
GAGAAGGATGCCTCCGAAGACGGCTTCCTCTCCTTTGAGGTTCTTCTGGA
AACTCAGTGCACAGCCGGAGTAGATTGTGAGACAAAGCTGGAGAAAAACA
AGGAATTCATTAGAGATGGCCGCATGGACGAAACTCTGGCTGCGCACGAT
TTCAGTAGAGTTTCAGTATTTCTTGAAGGCGAGTTGATCGAACGGTCTGA
ACCGCTGGGAGCAATCGGAACTTCCGGTCTGGGAGTTGGTGTAATCGCCG
GAATTGCTGTTGGTGGGATTGCGGTTATTTCACTCGTTGTGCTCGTCGCA
GTTGTAGCGGCTAACATGAGGAATGGTTCAAGTACTTATTCCTCAGATTA
TGATTCAGAGCTTGAGTTTGAAGATGACGTCGGACCAGACCATGAATTCC
CTCTTGATCAAGGATCCTTTATGATTAGCAACTTTGGAGGTACTCCTCGT
CACTCAGCGGCGATGATTCCTTGGTTGAATGACTCCTCTGCTGGATCCGG
GATGGAATACAACTCGCGATCCTTTATTTCGGTTGACTCAATGACGCCAG
GTGATGCTAATAGAATGTCACAGTATCGGTTTGACGAGACGATGTCTTCA
GCGTCTGGATCTGTAGTTGGTGAGGAAGTTTCTCAAGTGGCAGGACCAGA
AGAAAGCGGGAGCACAGTGTACGCAGTGCAGTAA