Gcaud8286.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8286.t1
Unique NameGcaud8286.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_572_length_21721_cov_4.382386contigNODE_572_length_21721_cov_4.382386:3722..5046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo109084
PFAMs2-Hacid_dh,2-Hacid_dh_C
Max annot lvl4776|Peronosporales
Evalue3.06e-119
EggNOG OGsCOG0111@1|root,KOG0068@2759|Eukaryota,3QDCS@4776|Peronosporales
DescriptionD-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8286Gcaud8286Gracilaria caudata M_176_S67 malegeneNODE_572_length_21721_cov_4.382386 3722..5046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8286.t1Gcaud8286.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_572_length_21721_cov_4.382386 3722..5046 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8286.t1.stop1Gcaud8286.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_572_length_21721_cov_4.382386 3722..3724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8286.t1.CDS1Gcaud8286.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_572_length_21721_cov_4.382386 3722..4809 -
Gcaud8286.t1.CDS2Gcaud8286.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_572_length_21721_cov_4.382386 4941..5046 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8286.t1.exon1Gcaud8286.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_572_length_21721_cov_4.382386 3722..4809 -
Gcaud8286.t1.exon2Gcaud8286.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_572_length_21721_cov_4.382386 4941..5046 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8286.t1.intron1Gcaud8286.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_572_length_21721_cov_4.382386 4810..4940 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8286.t1.start1Gcaud8286.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_572_length_21721_cov_4.382386 5044..5046 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8286.t1 ID=Gcaud8286.t1|Name=Gcaud8286.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=398bp
MKSSCRSDLPGHLPCCSASRPRRSSSPLKSASPPSRTFSPHFVMNATSAA
ITPAPIRVVVYSSKRYERDFLAAHPQLAKIAPNVQLEFLAPRLDATTAKL
AAGADAVCIFVNDDADEETLQILARNGTKCLLLRCAGFNQVDLNAAALNG
VTVLRVPQYSPYAVAEFAVALLLTTVRKTHKAYNRTRESNFALNGLLGFD
IHGKTIGICGTGKIGRLFAKIMLAFGARVIAYDVHVSEEAKDMGVDYVSF
DDLLGNSDIISLHCPLLPSTRHMINAEAVSKMKRGMVLINTSRGELVDMN
ALIFGVRSGIIGACGMDVMEGEEELFFDDHTGEILEDEKILTLQSLPNVL
ITPHIAFCTDTAISNIWSTTYENVVKFVERRTGGGAGALLKNEVVLQ*
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spliced messenger RNA

>Gcaud8286.t1 ID=Gcaud8286.t1|Name=Gcaud8286.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:3722..5046- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGCAGCTGCAGGTCAGACCTTCCTGGACACCTCCCCTGTTGCTC
CGCGTCTCGCCCTCGGCGCTCTTCATCGCCCTTAAAGAGCGCATCGCCCC
CGTCCAGGACGTTCAGTCCTCATTTCGTCATGAATGCAACAAGTGCAGCT
ATCACGCCCGCACCCATTCGCGTGGTAGTGTACAGTTCAAAACGATACGA
AAGAGATTTTCTAGCCGCACATCCGCAACTGGCCAAAATCGCACCAAACG
TTCAGCTGGAATTTCTGGCCCCTCGTCTGGATGCAACCACCGCTAAACTG
GCTGCTGGAGCCGATGCGGTGTGCATTTTCGTGAACGATGATGCAGACGA
AGAAACGCTTCAGATCTTGGCGAGGAATGGTACCAAATGCCTGTTACTCA
GATGTGCTGGTTTTAATCAAGTGGATTTGAATGCGGCTGCTTTGAATGGC
GTGACTGTTTTACGAGTTCCTCAGTACTCTCCGTACGCAGTTGCTGAATT
TGCGGTGGCGTTGTTACTCACTACTGTGCGAAAGACACACAAGGCGTACA
ACCGAACGAGGGAAAGTAACTTTGCTTTGAATGGATTGTTGGGATTTGAT
ATTCATGGAAAGACTATAGGTATTTGTGGTACGGGCAAGATTGGCCGATT
GTTTGCTAAGATCATGCTGGCATTTGGTGCTAGGGTGATTGCATACGATG
TGCATGTGAGTGAGGAGGCCAAGGACATGGGCGTGGACTACGTGAGCTTT
GATGATTTATTGGGAAACTCAGATATCATCAGTTTGCACTGTCCGCTATT
GCCGTCCACAAGACATATGATCAACGCCGAGGCAGTGAGCAAAATGAAGA
GAGGCATGGTGCTGATCAACACGTCCAGAGGTGAACTGGTTGACATGAAC
GCGCTCATCTTCGGTGTCCGAAGTGGCATTATCGGGGCGTGTGGCATGGA
CGTGATGGAGGGTGAAGAAGAACTGTTCTTCGACGATCATACGGGCGAGA
TCTTGGAAGATGAGAAGATTCTGACGCTGCAGAGTTTACCCAACGTGCTT
ATCACTCCGCATATTGCGTTCTGTACGGATACGGCGATTTCGAACATATG
GAGCACTACGTATGAGAACGTTGTGAAGTTTGTGGAGAGGAGAACTGGTG
GCGGTGCTGGAGCGCTCCTGAAGAATGAGGTAGTTCTGCAGTGA
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protein sequence of Gcaud8286.t1

>Gcaud8286.t1 ID=Gcaud8286.t1|Name=Gcaud8286.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=398bp
MKSSCRSDLPGHLPCCSASRPRRSSSPLKSASPPSRTFSPHFVMNATSAA
ITPAPIRVVVYSSKRYERDFLAAHPQLAKIAPNVQLEFLAPRLDATTAKL
AAGADAVCIFVNDDADEETLQILARNGTKCLLLRCAGFNQVDLNAAALNG
VTVLRVPQYSPYAVAEFAVALLLTTVRKTHKAYNRTRESNFALNGLLGFD
IHGKTIGICGTGKIGRLFAKIMLAFGARVIAYDVHVSEEAKDMGVDYVSF
DDLLGNSDIISLHCPLLPSTRHMINAEAVSKMKRGMVLINTSRGELVDMN
ALIFGVRSGIIGACGMDVMEGEEELFFDDHTGEILEDEKILTLQSLPNVL
ITPHIAFCTDTAISNIWSTTYENVVKFVERRTGGGAGALLKNEVVLQ*
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mRNA from alignment at NODE_572_length_21721_cov_4.382386:3722..5046-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8286.t1 ID=Gcaud8286.t1|Name=Gcaud8286.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1325bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:3722..5046- (Gracilaria caudata M_176_S67 male)
ATGAAGAGCAGCTGCAGGTCAGACCTTCCTGGACACCTCCCCTGTTGCTC
CGCGTCTCGCCCTCGGCGCTCTTCATCGCCCTTAAAGAGCGCATCGCCCC
CGTCCAGTACGTGTGCATCATTCGTCGTTCATCAACAGCAACAGCTCCAA
ACTTCATCAACAAGAGCAACCACCCCCCGCTTATCACCATGCTCAAGACA
GCCAAGCTAACCACTTTGAATCCAAACTTTCTGCTAGGGACGTTCAGTCC
TCATTTCGTCATGAATGCAACAAGTGCAGCTATCACGCCCGCACCCATTC
GCGTGGTAGTGTACAGTTCAAAACGATACGAAAGAGATTTTCTAGCCGCA
CATCCGCAACTGGCCAAAATCGCACCAAACGTTCAGCTGGAATTTCTGGC
CCCTCGTCTGGATGCAACCACCGCTAAACTGGCTGCTGGAGCCGATGCGG
TGTGCATTTTCGTGAACGATGATGCAGACGAAGAAACGCTTCAGATCTTG
GCGAGGAATGGTACCAAATGCCTGTTACTCAGATGTGCTGGTTTTAATCA
AGTGGATTTGAATGCGGCTGCTTTGAATGGCGTGACTGTTTTACGAGTTC
CTCAGTACTCTCCGTACGCAGTTGCTGAATTTGCGGTGGCGTTGTTACTC
ACTACTGTGCGAAAGACACACAAGGCGTACAACCGAACGAGGGAAAGTAA
CTTTGCTTTGAATGGATTGTTGGGATTTGATATTCATGGAAAGACTATAG
GTATTTGTGGTACGGGCAAGATTGGCCGATTGTTTGCTAAGATCATGCTG
GCATTTGGTGCTAGGGTGATTGCATACGATGTGCATGTGAGTGAGGAGGC
CAAGGACATGGGCGTGGACTACGTGAGCTTTGATGATTTATTGGGAAACT
CAGATATCATCAGTTTGCACTGTCCGCTATTGCCGTCCACAAGACATATG
ATCAACGCCGAGGCAGTGAGCAAAATGAAGAGAGGCATGGTGCTGATCAA
CACGTCCAGAGGTGAACTGGTTGACATGAACGCGCTCATCTTCGGTGTCC
GAAGTGGCATTATCGGGGCGTGTGGCATGGACGTGATGGAGGGTGAAGAA
GAACTGTTCTTCGACGATCATACGGGCGAGATCTTGGAAGATGAGAAGAT
TCTGACGCTGCAGAGTTTACCCAACGTGCTTATCACTCCGCATATTGCGT
TCTGTACGGATACGGCGATTTCGAACATATGGAGCACTACGTATGAGAAC
GTTGTGAAGTTTGTGGAGAGGAGAACTGGTGGCGGTGCTGGAGCGCTCCT
GAAGAATGAGGTAGTTCTGCAGTGA
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Coding sequence (CDS) from alignment at NODE_572_length_21721_cov_4.382386:3722..5046-

>Gcaud8286.t1 ID=Gcaud8286.t1|Name=Gcaud8286.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1194bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:3722..5046- (Gracilaria caudata M_176_S67 male)
ATGAAGAGCAGCTGCAGGTCAGACCTTCCTGGACACCTCCCCTGTTGCTC
CGCGTCTCGCCCTCGGCGCTCTTCATCGCCCTTAAAGAGCGCATCGCCCC
CGTCCAGGACGTTCAGTCCTCATTTCGTCATGAATGCAACAAGTGCAGCT
ATCACGCCCGCACCCATTCGCGTGGTAGTGTACAGTTCAAAACGATACGA
AAGAGATTTTCTAGCCGCACATCCGCAACTGGCCAAAATCGCACCAAACG
TTCAGCTGGAATTTCTGGCCCCTCGTCTGGATGCAACCACCGCTAAACTG
GCTGCTGGAGCCGATGCGGTGTGCATTTTCGTGAACGATGATGCAGACGA
AGAAACGCTTCAGATCTTGGCGAGGAATGGTACCAAATGCCTGTTACTCA
GATGTGCTGGTTTTAATCAAGTGGATTTGAATGCGGCTGCTTTGAATGGC
GTGACTGTTTTACGAGTTCCTCAGTACTCTCCGTACGCAGTTGCTGAATT
TGCGGTGGCGTTGTTACTCACTACTGTGCGAAAGACACACAAGGCGTACA
ACCGAACGAGGGAAAGTAACTTTGCTTTGAATGGATTGTTGGGATTTGAT
ATTCATGGAAAGACTATAGGTATTTGTGGTACGGGCAAGATTGGCCGATT
GTTTGCTAAGATCATGCTGGCATTTGGTGCTAGGGTGATTGCATACGATG
TGCATGTGAGTGAGGAGGCCAAGGACATGGGCGTGGACTACGTGAGCTTT
GATGATTTATTGGGAAACTCAGATATCATCAGTTTGCACTGTCCGCTATT
GCCGTCCACAAGACATATGATCAACGCCGAGGCAGTGAGCAAAATGAAGA
GAGGCATGGTGCTGATCAACACGTCCAGAGGTGAACTGGTTGACATGAAC
GCGCTCATCTTCGGTGTCCGAAGTGGCATTATCGGGGCGTGTGGCATGGA
CGTGATGGAGGGTGAAGAAGAACTGTTCTTCGACGATCATACGGGCGAGA
TCTTGGAAGATGAGAAGATTCTGACGCTGCAGAGTTTACCCAACGTGCTT
ATCACTCCGCATATTGCGTTCTGTACGGATACGGCGATTTCGAACATATG
GAGCACTACGTATGAGAACGTTGTGAAGTTTGTGGAGAGGAGAACTGGTG
GCGGTGCTGGAGCGCTCCTGAAGAATGAGGTAGTTCTGCAGTGA
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