Gcaud8273.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8273.t1
Unique NameGcaud8273.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length41
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1463_length_10453_cov_4.528759contigNODE_1463_length_10453_cov_4.528759:290..500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8273Gcaud8273Gracilaria caudata M_176_S67 malegeneNODE_1463_length_10453_cov_4.528759 290..500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8273.t1Gcaud8273.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1463_length_10453_cov_4.528759 290..500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8273.t1.CDS1Gcaud8273.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1463_length_10453_cov_4.528759 290..293 +
Gcaud8273.t1.CDS2Gcaud8273.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1463_length_10453_cov_4.528759 384..500 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8273.t1.exon1Gcaud8273.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1463_length_10453_cov_4.528759 290..293 +
Gcaud8273.t1.exon2Gcaud8273.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1463_length_10453_cov_4.528759 384..500 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8273.t1.intron1Gcaud8273.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1463_length_10453_cov_4.528759 294..383 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8273.t1.stop1Gcaud8273.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1463_length_10453_cov_4.528759 498..500 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8273.t1 ID=Gcaud8273.t1|Name=Gcaud8273.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=41bp
XFLGSKRIRLELTIVSPHNGNYTSRAVNYPEGEAARAEKI*
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spliced messenger RNA

>Gcaud8273.t1 ID=Gcaud8273.t1|Name=Gcaud8273.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=121bp|location=Sequence derived from alignment at NODE_1463_length_10453_cov_4.528759:290..500+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ctttTTGGGATCAAAGCGCATACGGCTGGAACTTACCATTGTGAGCCCTC
ATAATGGCAATTACACTTCTAGAGCCGTGAATTACCCAGAGGGAGAGGCG
GCAAGAGCAGAGAAAATTTAG
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protein sequence of Gcaud8273.t1

>Gcaud8273.t1 ID=Gcaud8273.t1|Name=Gcaud8273.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=41bp
XFLGSKRIRLELTIVSPHNGNYTSRAVNYPEGEAARAEKI*
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mRNA from alignment at NODE_1463_length_10453_cov_4.528759:290..500+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8273.t1 ID=Gcaud8273.t1|Name=Gcaud8273.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=211bp|location=Sequence derived from alignment at NODE_1463_length_10453_cov_4.528759:290..500+ (Gracilaria caudata M_176_S67 male)
ctttgtacgcagtcatcatcgctgtttaaattccaaagacccgtgctgac
aacagaatgtctaatTTGCTCACCTCTCCTTCCTGGTCGAATAGTTGGGA
TCAAAGCGCATACGGCTGGAACTTACCATTGTGAGCCCTCATAATGGCAA
TTACACTTCTAGAGCCGTGAATTACCCAGAGGGAGAGGCGGCAAGAGCAG
AGAAAATTTAG
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Coding sequence (CDS) from alignment at NODE_1463_length_10453_cov_4.528759:290..500+

>Gcaud8273.t1 ID=Gcaud8273.t1|Name=Gcaud8273.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=121bp|location=Sequence derived from alignment at NODE_1463_length_10453_cov_4.528759:290..500+ (Gracilaria caudata M_176_S67 male)
ctttTTGGGATCAAAGCGCATACGGCTGGAACTTACCATTGTGAGCCCTC
ATAATGGCAATTACACTTCTAGAGCCGTGAATTACCCAGAGGGAGAGGCG
GCAAGAGCAGAGAAAATTTAG
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