Gcaud8267.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8267.t1
Unique NameGcaud8267.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1563_length_9733_cov_3.722049contigNODE_1563_length_9733_cov_3.722049:988..1677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8267Gcaud8267Gracilaria caudata M_176_S67 malegeneNODE_1563_length_9733_cov_3.722049 988..1677 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8267.t1.stop1Gcaud8267.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1563_length_9733_cov_3.722049 988..990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8267.t1.CDS1Gcaud8267.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1563_length_9733_cov_3.722049 988..1677 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8267.t1.exon1Gcaud8267.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1563_length_9733_cov_3.722049 988..1677 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8267.t1.start1Gcaud8267.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1563_length_9733_cov_3.722049 1675..1677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8267.t1Gcaud8267.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1563_length_9733_cov_3.722049 988..1677 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8267.t1 ID=Gcaud8267.t1|Name=Gcaud8267.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=230bp
LLLLLIVFLVLAALRRREPQQATGEYSAAQAGVDASGTEVVVDAAAFRKD
EARDMGPAVPPTGGGELLTTPLPLPVVPPPGAGAGSSSEEGAPVVKRGAT
PPPHDYVLGAGPAATRSDFIDLRTKFERDEIGDNSAVLGVERGETGVVEE
QQQQVQEQMVEGERGALDDRVGDTTAMTFESQERLMAGGDGSGAVSDAMQ
ASGAASIAEESGDMPSLERDPIQRDGDAY*
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spliced messenger RNA

>Gcaud8267.t1 ID=Gcaud8267.t1|Name=Gcaud8267.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=690bp|location=Sequence derived from alignment at NODE_1563_length_9733_cov_3.722049:988..1677- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTGCTCCTTCTCATCGTGTTCCTCGTGCTCGCCGCACTGCGTCGTCG
CGAGCCACAACAAGCCACGGGCGAGTATTCCGCGGCGCAGGCCGGCGTGG
ATGCGTCCGGAACAGAGGTGGTGGTGGACGCGGCGGCGTTCCGCAAGGAT
GAGGCGCGCGACATGGGCCCCGCCGTGCCGCCCACGGGCGGCGGCGAGCT
GTTGACGACGCCGCTGCCGCTGCCCGTTGTACCGCCGCCTGGCGCGGGCG
CGGGGAGCTCGTCGGAGGAGGGCGCGCCCGTGGTGAAACGGGGGGCTACG
CCGCCGCCGCATGACTACGTGCTGGGCGCGGGGCCCGCGGCGACGCGCTC
TGACTTTATTGACTTGCGCACCAAGTTTGAGCGCGATGAGATCGGCGATA
ACTCGGCGGTGCTGGGCGTGGAGCGCGGCGAGACGGGCGTGGTGGAGGAG
CAGCAGCAGCAGGTGCAGGAGCAGATGGTGGAGGGTGAGAGGGGCGCGTT
GGATGATCGCGTGGGCGATACGACGGCGATGACGTTCGAGTCGCAGGAAC
GACTGATGGCGGGCGGCGATGGATCGGGCGCGGTGTCGGACGCGATGCAG
GCGTCGGGCGCGGCGAGCATTGCGGAGGAGAGCGGCGATATGCCCAGTCT
GGAACGGGACCCCATCCAACGCGACGGCGACGCGTACTGA
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protein sequence of Gcaud8267.t1

>Gcaud8267.t1 ID=Gcaud8267.t1|Name=Gcaud8267.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=230bp
LLLLLIVFLVLAALRRREPQQATGEYSAAQAGVDASGTEVVVDAAAFRKD
EARDMGPAVPPTGGGELLTTPLPLPVVPPPGAGAGSSSEEGAPVVKRGAT
PPPHDYVLGAGPAATRSDFIDLRTKFERDEIGDNSAVLGVERGETGVVEE
QQQQVQEQMVEGERGALDDRVGDTTAMTFESQERLMAGGDGSGAVSDAMQ
ASGAASIAEESGDMPSLERDPIQRDGDAY*
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mRNA from alignment at NODE_1563_length_9733_cov_3.722049:988..1677-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8267.t1 ID=Gcaud8267.t1|Name=Gcaud8267.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=690bp|location=Sequence derived from alignment at NODE_1563_length_9733_cov_3.722049:988..1677- (Gracilaria caudata M_176_S67 male)
CTGCTGCTCCTTCTCATCGTGTTCCTCGTGCTCGCCGCACTGCGTCGTCG
CGAGCCACAACAAGCCACGGGCGAGTATTCCGCGGCGCAGGCCGGCGTGG
ATGCGTCCGGAACAGAGGTGGTGGTGGACGCGGCGGCGTTCCGCAAGGAT
GAGGCGCGCGACATGGGCCCCGCCGTGCCGCCCACGGGCGGCGGCGAGCT
GTTGACGACGCCGCTGCCGCTGCCCGTTGTACCGCCGCCTGGCGCGGGCG
CGGGGAGCTCGTCGGAGGAGGGCGCGCCCGTGGTGAAACGGGGGGCTACG
CCGCCGCCGCATGACTACGTGCTGGGCGCGGGGCCCGCGGCGACGCGCTC
TGACTTTATTGACTTGCGCACCAAGTTTGAGCGCGATGAGATCGGCGATA
ACTCGGCGGTGCTGGGCGTGGAGCGCGGCGAGACGGGCGTGGTGGAGGAG
CAGCAGCAGCAGGTGCAGGAGCAGATGGTGGAGGGTGAGAGGGGCGCGTT
GGATGATCGCGTGGGCGATACGACGGCGATGACGTTCGAGTCGCAGGAAC
GACTGATGGCGGGCGGCGATGGATCGGGCGCGGTGTCGGACGCGATGCAG
GCGTCGGGCGCGGCGAGCATTGCGGAGGAGAGCGGCGATATGCCCAGTCT
GGAACGGGACCCCATCCAACGCGACGGCGACGCGTACTGA
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Coding sequence (CDS) from alignment at NODE_1563_length_9733_cov_3.722049:988..1677-

>Gcaud8267.t1 ID=Gcaud8267.t1|Name=Gcaud8267.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=690bp|location=Sequence derived from alignment at NODE_1563_length_9733_cov_3.722049:988..1677- (Gracilaria caudata M_176_S67 male)
CTGCTGCTCCTTCTCATCGTGTTCCTCGTGCTCGCCGCACTGCGTCGTCG
CGAGCCACAACAAGCCACGGGCGAGTATTCCGCGGCGCAGGCCGGCGTGG
ATGCGTCCGGAACAGAGGTGGTGGTGGACGCGGCGGCGTTCCGCAAGGAT
GAGGCGCGCGACATGGGCCCCGCCGTGCCGCCCACGGGCGGCGGCGAGCT
GTTGACGACGCCGCTGCCGCTGCCCGTTGTACCGCCGCCTGGCGCGGGCG
CGGGGAGCTCGTCGGAGGAGGGCGCGCCCGTGGTGAAACGGGGGGCTACG
CCGCCGCCGCATGACTACGTGCTGGGCGCGGGGCCCGCGGCGACGCGCTC
TGACTTTATTGACTTGCGCACCAAGTTTGAGCGCGATGAGATCGGCGATA
ACTCGGCGGTGCTGGGCGTGGAGCGCGGCGAGACGGGCGTGGTGGAGGAG
CAGCAGCAGCAGGTGCAGGAGCAGATGGTGGAGGGTGAGAGGGGCGCGTT
GGATGATCGCGTGGGCGATACGACGGCGATGACGTTCGAGTCGCAGGAAC
GACTGATGGCGGGCGGCGATGGATCGGGCGCGGTGTCGGACGCGATGCAG
GCGTCGGGCGCGGCGAGCATTGCGGAGGAGAGCGGCGATATGCCCAGTCT
GGAACGGGACCCCATCCAACGCGACGGCGACGCGTACTGA
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