Gcaud8249.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8249.t1
Unique Name	Gcaud8249.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	284

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_308_length_31041_cov_4.463651	contig	NODE_308_length_31041_cov_4.463651:25713..26813 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703731.1
Preferred name	SBPase
PFAMs	FBPase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K01100
KEGG Reaction	R01845
KEGG Pathway	ko00710,ko01100,ko01120,ko01200,map00710,map01100,map01120,map01200
KEGG Module	M00165,M00167
GOs	GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005982,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006073,GO:0006094,GO:0006793,GO:0006796,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009311,GO:0009312,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009941,GO:0009987,GO:0015977,GO:0015979,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019252,GO:0019253,GO:0019318,GO:0019319,GO:0019637,GO:0019685,GO:0030388,GO:0031967,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0042132,GO:0042578,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046351,GO:0046364,GO:0048046,GO:0050278,GO:0050308,GO:0050896,GO:0051704,GO:0051707,GO:0071704,GO:0098542,GO:1901135,GO:1901576
Evalue	8.37e-85
EggNOG OGs	COG0158@1\|root,KOG1458@2759\|Eukaryota
EC	3.1.3.37
Description	fructose 1,6-bisphosphate 1-phosphatase activity
COG category	G
BiGG Reaction	iRC1080.CRv4_Au5_s3_g10858_t1
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8249	Gcaud8249	Gracilaria caudata M_176_S67 male	gene	NODE_308_length_31041_cov_4.463651 25713..26813 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8249.t1	Gcaud8249.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_308_length_31041_cov_4.463651 25713..26813 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8249.t1.stop1	Gcaud8249.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_308_length_31041_cov_4.463651 25713..25715 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8249.t1.CDS1	Gcaud8249.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_308_length_31041_cov_4.463651 25713..25717 -
Gcaud8249.t1.CDS2	Gcaud8249.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_308_length_31041_cov_4.463651 25967..26813 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8249.t1.exon1	Gcaud8249.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_308_length_31041_cov_4.463651 25713..25717 -
Gcaud8249.t1.exon2	Gcaud8249.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_308_length_31041_cov_4.463651 25967..26813 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8249.t1.intron1	Gcaud8249.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_308_length_31041_cov_4.463651 25718..25966 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8249.t1.start1	Gcaud8249.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_308_length_31041_cov_4.463651 26811..26813 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_308_length_31041_cov_4.463651:25713..26813-
coding sequence from alignment at NODE_308_length_31041_cov_4.463651:25713..26813-

mRNA sequence

>Gcaud8249.t1 ID=Gcaud8249.t1|Name=Gcaud8249.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=284bp
MTDLLEASTAFISSLTPSLSDKLCGLKDPALVSVVTAIADASTKIAHLLR
ESTHAADKAASVNTFGDEQLKIDVQADRIIMKALEKCGAVAVASSEETPV
EKKLNDNGSYTVAFDPLDGSSIMASNFSVGSIFGVWPGKKLVGVRGRDMA
LSVAVVYGPQATMFIAARSFGSYVNHFTLFNGAWRHTRDIYEIKEGKLFA
PANLRCAQDNEAYNRLIQYYLTNKYTLRYTGGMVPDVTQILMKGTGVFVS
PVSPSAPAKLRLAYEALPMAFLIAAAGGRSTTD*

spliced messenger RNA

>Gcaud8249.t1 ID=Gcaud8249.t1|Name=Gcaud8249.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=852bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:25713..26813- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGACTTGCTTGAAGCTTCGACGGCGTTCATTTCGTCGCTCACCCC
GTCTTTGTCCGACAAGCTTTGTGGATTGAAAGATCCTGCGCTTGTTTCCG
TCGTAACCGCTATTGCTGATGCGTCCACTAAGATTGCTCATCTGTTGCGA
GAAAGCACCCATGCGGCGGATAAAGCTGCTTCGGTTAATACCTTTGGAGA
TGAGCAGTTGAAGATTGATGTGCAGGCTGACAGGATTATTATGAAGGCTT
TGGAGAAGTGCGGCGCAGTGGCTGTCGCATCCTCGGAAGAAACTCCAGTG
GAGAAGAAGCTTAATGATAATGGATCCTACACCGTCGCATTTGATCCACT
AGATGGCTCGTCGATTATGGCATCTAACTTCTCAGTCGGCTCAATCTTTG
GTGTGTGGCCAGGCAAGAAACTCGTTGGCGTTCGTGGACGTGATATGGCT
CTTTCCGTTGCTGTTGTGTATGGCCCACAAGCCACTATGTTTATTGCTGC
ACGCTCTTTTGGTTCGTATGTCAATCACTTCACTTTGTTCAATGGAGCGT
GGAGGCATACCAGAGATATATACGAAATCAAGGAAGGAAAATTGTTCGCC
CCTGCCAATTTACGTTGTGCGCAAGATAATGAGGCGTATAATCGTCTCAT
TCAATACTATTTAACCAACAAGTATACCTTGAGGTATACTGGTGGTATGG
TTCCAGATGTCACGCAGATACTAATGAAAGGTACTGGTGTGTTTGTTTCA
CCAGTTTCACCTTCTGCACCGGCCAAACTGCGACTAGCATACGAAGCTTT
GCCTATGGCTTTTCTCATTGCGGCAGCAGGGGGTCGCTCTACCACAGACT
AA

protein sequence of Gcaud8249.t1

>Gcaud8249.t1 ID=Gcaud8249.t1|Name=Gcaud8249.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=284bp
MTDLLEASTAFISSLTPSLSDKLCGLKDPALVSVVTAIADASTKIAHLLR
ESTHAADKAASVNTFGDEQLKIDVQADRIIMKALEKCGAVAVASSEETPV
EKKLNDNGSYTVAFDPLDGSSIMASNFSVGSIFGVWPGKKLVGVRGRDMA
LSVAVVYGPQATMFIAARSFGSYVNHFTLFNGAWRHTRDIYEIKEGKLFA
PANLRCAQDNEAYNRLIQYYLTNKYTLRYTGGMVPDVTQILMKGTGVFVS
PVSPSAPAKLRLAYEALPMAFLIAAAGGRSTTD*

mRNA from alignment at NODE_308_length_31041_cov_4.463651:25713..26813-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8249.t1 ID=Gcaud8249.t1|Name=Gcaud8249.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:25713..26813- (Gracilaria caudata M_176_S67 male)
ATGACTGACTTGCTTGAAGCTTCGACGGCGTTCATTTCGTCGCTCACCCC
GTCTTTGTCCGACAAGCTTTGTGGATTGAAAGATCCTGCGCTTGTTTCCG
TCGTAACCGCTATTGCTGATGCGTCCACTAAGATTGCTCATCTGTTGCGA
GAAAGCACCCATGCGGCGGATAAAGCTGCTTCGGTTAATACCTTTGGAGA
TGAGCAGTTGAAGATTGATGTGCAGGCTGACAGGATTATTATGAAGGCTT
TGGAGAAGTGCGGCGCAGTGGCTGTCGCATCCTCGGAAGAAACTCCAGTG
GAGAAGAAGCTTAATGATAATGGATCCTACACCGTCGCATTTGATCCACT
AGATGGCTCGTCGATTATGGCATCTAACTTCTCAGTCGGCTCAATCTTTG
GTGTGTGGCCAGGCAAGAAACTCGTTGGCGTTCGTGGACGTGATATGGCT
CTTTCCGTTGCTGTTGTGTATGGCCCACAAGCCACTATGTTTATTGCTGC
ACGCTCTTTTGGTTCGTATGTCAATCACTTCACTTTGTTCAATGGAGCGT
GGAGGCATACCAGAGATATATACGAAATCAAGGAAGGAAAATTGTTCGCC
CCTGCCAATTTACGTTGTGCGCAAGATAATGAGGCGTATAATCGTCTCAT
TCAATACTATTTAACCAACAAGTATACCTTGAGGTATACTGGTGGTATGG
TTCCAGATGTCACGCAGATACTAATGAAAGGTACTGGTGTGTTTGTTTCA
CCAGTTTCACCTTCTGCACCGGCCAAACTGCGACTAGCATACGAAGCTTT
GCCTATGGCTTTTCTCATTGCGGCAGCAGGGGGTCGCTCTACCACAGGTG
AGTCTAGTGTGCTTGATATGTGTATTGATGAGTGTGAACAACGCACTCCA
GTCTGTCTCGGCAGTCCCGGTGAGGTGCTCAGGTATGAAAAACTTGTACA
AGCAGCCCGAAACGGCCATTAGATTTGCTGCTCTCGGCGTTTAAATTCTG
CGTCGGTCAAGAATGCCATTTCTTTTTTCTTTGTCCGAGCGTAGCTGTTC
TGTGTGTGCTTTAGTCTCAGCATCGATACTGACAGCAGTGGAACAGACTA
A

Coding sequence (CDS) from alignment at NODE_308_length_31041_cov_4.463651:25713..26813-

>Gcaud8249.t1 ID=Gcaud8249.t1|Name=Gcaud8249.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=852bp|location=Sequence derived from alignment at NODE_308_length_31041_cov_4.463651:25713..26813- (Gracilaria caudata M_176_S67 male)
ATGACTGACTTGCTTGAAGCTTCGACGGCGTTCATTTCGTCGCTCACCCC
GTCTTTGTCCGACAAGCTTTGTGGATTGAAAGATCCTGCGCTTGTTTCCG
TCGTAACCGCTATTGCTGATGCGTCCACTAAGATTGCTCATCTGTTGCGA
GAAAGCACCCATGCGGCGGATAAAGCTGCTTCGGTTAATACCTTTGGAGA
TGAGCAGTTGAAGATTGATGTGCAGGCTGACAGGATTATTATGAAGGCTT
TGGAGAAGTGCGGCGCAGTGGCTGTCGCATCCTCGGAAGAAACTCCAGTG
GAGAAGAAGCTTAATGATAATGGATCCTACACCGTCGCATTTGATCCACT
AGATGGCTCGTCGATTATGGCATCTAACTTCTCAGTCGGCTCAATCTTTG
GTGTGTGGCCAGGCAAGAAACTCGTTGGCGTTCGTGGACGTGATATGGCT
CTTTCCGTTGCTGTTGTGTATGGCCCACAAGCCACTATGTTTATTGCTGC
ACGCTCTTTTGGTTCGTATGTCAATCACTTCACTTTGTTCAATGGAGCGT
GGAGGCATACCAGAGATATATACGAAATCAAGGAAGGAAAATTGTTCGCC
CCTGCCAATTTACGTTGTGCGCAAGATAATGAGGCGTATAATCGTCTCAT
TCAATACTATTTAACCAACAAGTATACCTTGAGGTATACTGGTGGTATGG
TTCCAGATGTCACGCAGATACTAATGAAAGGTACTGGTGTGTTTGTTTCA
CCAGTTTCACCTTCTGCACCGGCCAAACTGCGACTAGCATACGAAGCTTT
GCCTATGGCTTTTCTCATTGCGGCAGCAGGGGGTCGCTCTACCACAGACT
AA