Gcaud8099.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8099.t1
Unique Name	Gcaud8099.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	646

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2215_length_6410_cov_4.387087	contig	NODE_2215_length_6410_cov_4.387087:1099..3036 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8099	Gcaud8099	Gracilaria caudata M_176_S67 male	gene	NODE_2215_length_6410_cov_4.387087 1099..3036 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8099.t1.stop1	Gcaud8099.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2215_length_6410_cov_4.387087 1099..1101 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8099.t1.CDS1	Gcaud8099.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2215_length_6410_cov_4.387087 1099..3036 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8099.t1.exon1	Gcaud8099.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2215_length_6410_cov_4.387087 1099..3036 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8099.t1	Gcaud8099.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2215_length_6410_cov_4.387087 1099..3036 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2215_length_6410_cov_4.387087:1099..3036-
coding sequence from alignment at NODE_2215_length_6410_cov_4.387087:1099..3036-

mRNA sequence

>Gcaud8099.t1 ID=Gcaud8099.t1|Name=Gcaud8099.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=646bp
DQNNLPPVPPGNQAGASGTQPTPSENVPSSQNLAQATVSETVQTVSLNEA
TSSPTQAQKTQFLPRAELTNAQQRNFASCIREIFRENPTSEQFPERLRTD
LDPLLLCSPAVTRNTSCARALEIKLKQYNIPLPDPTHHRSPTVRIAHAIF
KDVNYEAFQTVYGHIVEKRPHPYLSITTAPEDVPNYRVTSHPASSPQPQI
PQYSLIPLPVPSQPVQLAPPPTSGTLSHSTQPPSTAAPHISVHQSTQNVP
PATNPLHTIAPLPINQPPVNPNKFLPSPPRSPNSLNLTTFNAFVSGLGEF
LDRLQATHQQPISGPDVLRTQQPPGLSPQLTNPTTHNAPQGTTQPLPYIA
PAAPVHNIVPPPPILSHIHPQTQLPHRSPVHLPSTDHATSSPIAPPNPAP
QVPSAVQGSSLLGVPPLPHQHPQHHTPQHSHGPTPATQGPSMPLSTHRPS
QHRNLNIQSRDYVIQKASTQLSHVFKDAKFKGLIEDSWTNTLVDFEHVVK
TVYKLSDPECLDLLPQILADEARDYYNQEIRSLARDYRQAIQMLSSRFDD
STTQHRILIYLQTLRIDEFFDGTRSINDAFNKLTAEIQAHFPRIPKNFQS
DHFKRELLKSALAKQEWYRIELQRPLTTYPTYNDLRAALADCAQQ*

spliced messenger RNA

>Gcaud8099.t1 ID=Gcaud8099.t1|Name=Gcaud8099.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at NODE_2215_length_6410_cov_4.387087:1099..3036- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GACCAAAACAACCTACCACCCGTGCCGCCAGGCAACCAGGCCGGAGCTTC
CGGAACTCAACCAACCCCGTCCGAAAACGTGCCCTCGTCCCAAAACCTTG
CGCAAGCCACCGTCTCTGAGACAGTCCAGACCGTCAGTCTCAATGAAGCC
ACTTCATCTCCAACTCAAGCACAGAAGACCCAATTTCTTCCCCGTGCTGA
GCTTACAAACGCCCAACAGCGTAACTTTGCCTCATGCATCCGTGAAATCT
TCCGTGAAAACCCAACTTCAGAACAATTTCCCGAACGCCTTCGCACTGAC
CTTGATCCGTTACTTCTTTGCTCACCTGCCGTAACTCGCAATACCTCCTG
CGCCCGTGCTCTTGAGATTAAGCTCAAGCAGTACAACATTCCGCTTCCAG
ATCCTACTCATCATCGCAGTCCAACGGTTCGCATTGCCCACGCGATCTTT
AAGGATGTCAACTACGAAGCTTTCCAGACTGTCTACGGTCATATTGTTGA
GAAGCGCCCTCATCCATATTTGTCCATCACTACTGCTCCCGAAGATGTCC
CGAACTACCGTGTCACCTCTCACCCAGCCTCATCCCCGCAGCCACAGATA
CCCCAGTACAGTCTCATTCCCCTTCCGGTTCCCAGTCAACCAGTTCAGCT
CGCTCCTCCCCCGACATCTGGGACTCTTAGTCACTCTACTCAGCCTCCTT
CTACCGCAGCTCCGCACATTTCTGTCCACCAATCCACGCAAAATGTTCCA
CCCGCTACCAACCCCCTACATACTATCGCTCCTCTCCCAATCAACCAGCC
ACCCGTTAACCCCAATAAGTTCCTTCCCTCTCCTCCAAGATCACCCAACT
CCCTGAACCTCACTACTTTTAATGCATTTGTCTCTGGTTTAGGCGAATTT
CTAGATCGTCTCCAGGCCACTCATCAACAGCCTATTTCTGGCCCTGACGT
GCTCCGCACCCAACAGCCTCCAGGCCTATCCCCACAGCTTACCAACCCCA
CCACCCACAACGCCCCCCAGGGTACCACCCAACCTCTTCCTTATATAGCT
CCTGCTGCTCCCGTTCACAACATTGTTCCCCCTCCCCCCATTCTATCGCA
TATTCACCCTCAAACCCAGCTCCCACATAGGTCTCCTGTTCACCTTCCTT
CAACCGACCACGCCACTTCCTCCCCAATCGCTCCACCGAACCCTGCTCCC
CAAGTCCCTTCCGCTGTTCAGGGCTCCTCTCTCTTGGGTGTACCTCCTCT
ACCCCACCAACATCCTCAGCACCACACCCCACAACATTCCCACGGCCCCA
CACCTGCCACTCAGGGCCCCAGCATGCCCTTGTCCACTCATCGACCTTCC
CAACACAGAAATCTTAATATCCAATCTCGAGATTATGTTATCCAAAAGGC
TTCTACACAACTCTCCCATGTCTTCAAAGATGCAAAATTCAAAGGTCTCA
TCGAAGACTCTTGGACCAACACCCTTGTTGATTTTGAACACGTAGTCAAA
ACTGTCTACAAACTATCAGACCCCGAATGCCTTGACCTCCTCCCGCAAAT
CCTTGCCGATGAGGCCCGCGACTACTACAACCAAGAGATCCGTTCTCTCG
CCCGCGATTACCGCCAAGCTATTCAAATGCTCTCTTCCCGTTTTGACGAC
AGCACTACTCAACACCGCATCTTGATCTACCTACAGACACTGCGTATTGA
CGAATTCTTTGACGGCACGCGATCCATCAACGATGCTTTCAACAAACTCA
CCGCAGAGATACAGGCACATTTCCCACGCATTCCCAAAAACTTTCAGAGC
GATCACTTTAAACGTGAACTCCTAAAATCGGCTCTGGCCAAACAGGAATG
GTATCGGATTGAGCTACAACGACCACTAACTACCTATCCCACATACAACG
ATCTACGAGCCGCTCTGGCTGACTGTGCCCAACAGTAA

protein sequence of Gcaud8099.t1

>Gcaud8099.t1 ID=Gcaud8099.t1|Name=Gcaud8099.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=646bp
DQNNLPPVPPGNQAGASGTQPTPSENVPSSQNLAQATVSETVQTVSLNEA
TSSPTQAQKTQFLPRAELTNAQQRNFASCIREIFRENPTSEQFPERLRTD
LDPLLLCSPAVTRNTSCARALEIKLKQYNIPLPDPTHHRSPTVRIAHAIF
KDVNYEAFQTVYGHIVEKRPHPYLSITTAPEDVPNYRVTSHPASSPQPQI
PQYSLIPLPVPSQPVQLAPPPTSGTLSHSTQPPSTAAPHISVHQSTQNVP
PATNPLHTIAPLPINQPPVNPNKFLPSPPRSPNSLNLTTFNAFVSGLGEF
LDRLQATHQQPISGPDVLRTQQPPGLSPQLTNPTTHNAPQGTTQPLPYIA
PAAPVHNIVPPPPILSHIHPQTQLPHRSPVHLPSTDHATSSPIAPPNPAP
QVPSAVQGSSLLGVPPLPHQHPQHHTPQHSHGPTPATQGPSMPLSTHRPS
QHRNLNIQSRDYVIQKASTQLSHVFKDAKFKGLIEDSWTNTLVDFEHVVK
TVYKLSDPECLDLLPQILADEARDYYNQEIRSLARDYRQAIQMLSSRFDD
STTQHRILIYLQTLRIDEFFDGTRSINDAFNKLTAEIQAHFPRIPKNFQS
DHFKRELLKSALAKQEWYRIELQRPLTTYPTYNDLRAALADCAQQ*

mRNA from alignment at NODE_2215_length_6410_cov_4.387087:1099..3036-

Legend: polypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8099.t1 ID=Gcaud8099.t1|Name=Gcaud8099.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at NODE_2215_length_6410_cov_4.387087:1099..3036- (Gracilaria caudata M_176_S67 male)
GACCAAAACAACCTACCACCCGTGCCGCCAGGCAACCAGGCCGGAGCTTC
CGGAACTCAACCAACCCCGTCCGAAAACGTGCCCTCGTCCCAAAACCTTG
CGCAAGCCACCGTCTCTGAGACAGTCCAGACCGTCAGTCTCAATGAAGCC
ACTTCATCTCCAACTCAAGCACAGAAGACCCAATTTCTTCCCCGTGCTGA
GCTTACAAACGCCCAACAGCGTAACTTTGCCTCATGCATCCGTGAAATCT
TCCGTGAAAACCCAACTTCAGAACAATTTCCCGAACGCCTTCGCACTGAC
CTTGATCCGTTACTTCTTTGCTCACCTGCCGTAACTCGCAATACCTCCTG
CGCCCGTGCTCTTGAGATTAAGCTCAAGCAGTACAACATTCCGCTTCCAG
ATCCTACTCATCATCGCAGTCCAACGGTTCGCATTGCCCACGCGATCTTT
AAGGATGTCAACTACGAAGCTTTCCAGACTGTCTACGGTCATATTGTTGA
GAAGCGCCCTCATCCATATTTGTCCATCACTACTGCTCCCGAAGATGTCC
CGAACTACCGTGTCACCTCTCACCCAGCCTCATCCCCGCAGCCACAGATA
CCCCAGTACAGTCTCATTCCCCTTCCGGTTCCCAGTCAACCAGTTCAGCT
CGCTCCTCCCCCGACATCTGGGACTCTTAGTCACTCTACTCAGCCTCCTT
CTACCGCAGCTCCGCACATTTCTGTCCACCAATCCACGCAAAATGTTCCA
CCCGCTACCAACCCCCTACATACTATCGCTCCTCTCCCAATCAACCAGCC
ACCCGTTAACCCCAATAAGTTCCTTCCCTCTCCTCCAAGATCACCCAACT
CCCTGAACCTCACTACTTTTAATGCATTTGTCTCTGGTTTAGGCGAATTT
CTAGATCGTCTCCAGGCCACTCATCAACAGCCTATTTCTGGCCCTGACGT
GCTCCGCACCCAACAGCCTCCAGGCCTATCCCCACAGCTTACCAACCCCA
CCACCCACAACGCCCCCCAGGGTACCACCCAACCTCTTCCTTATATAGCT
CCTGCTGCTCCCGTTCACAACATTGTTCCCCCTCCCCCCATTCTATCGCA
TATTCACCCTCAAACCCAGCTCCCACATAGGTCTCCTGTTCACCTTCCTT
CAACCGACCACGCCACTTCCTCCCCAATCGCTCCACCGAACCCTGCTCCC
CAAGTCCCTTCCGCTGTTCAGGGCTCCTCTCTCTTGGGTGTACCTCCTCT
ACCCCACCAACATCCTCAGCACCACACCCCACAACATTCCCACGGCCCCA
CACCTGCCACTCAGGGCCCCAGCATGCCCTTGTCCACTCATCGACCTTCC
CAACACAGAAATCTTAATATCCAATCTCGAGATTATGTTATCCAAAAGGC
TTCTACACAACTCTCCCATGTCTTCAAAGATGCAAAATTCAAAGGTCTCA
TCGAAGACTCTTGGACCAACACCCTTGTTGATTTTGAACACGTAGTCAAA
ACTGTCTACAAACTATCAGACCCCGAATGCCTTGACCTCCTCCCGCAAAT
CCTTGCCGATGAGGCCCGCGACTACTACAACCAAGAGATCCGTTCTCTCG
CCCGCGATTACCGCCAAGCTATTCAAATGCTCTCTTCCCGTTTTGACGAC
AGCACTACTCAACACCGCATCTTGATCTACCTACAGACACTGCGTATTGA
CGAATTCTTTGACGGCACGCGATCCATCAACGATGCTTTCAACAAACTCA
CCGCAGAGATACAGGCACATTTCCCACGCATTCCCAAAAACTTTCAGAGC
GATCACTTTAAACGTGAACTCCTAAAATCGGCTCTGGCCAAACAGGAATG
GTATCGGATTGAGCTACAACGACCACTAACTACCTATCCCACATACAACG
ATCTACGAGCCGCTCTGGCTGACTGTGCCCAACAGTAA

Coding sequence (CDS) from alignment at NODE_2215_length_6410_cov_4.387087:1099..3036-

>Gcaud8099.t1 ID=Gcaud8099.t1|Name=Gcaud8099.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1938bp|location=Sequence derived from alignment at NODE_2215_length_6410_cov_4.387087:1099..3036- (Gracilaria caudata M_176_S67 male)
GACCAAAACAACCTACCACCCGTGCCGCCAGGCAACCAGGCCGGAGCTTC
CGGAACTCAACCAACCCCGTCCGAAAACGTGCCCTCGTCCCAAAACCTTG
CGCAAGCCACCGTCTCTGAGACAGTCCAGACCGTCAGTCTCAATGAAGCC
ACTTCATCTCCAACTCAAGCACAGAAGACCCAATTTCTTCCCCGTGCTGA
GCTTACAAACGCCCAACAGCGTAACTTTGCCTCATGCATCCGTGAAATCT
TCCGTGAAAACCCAACTTCAGAACAATTTCCCGAACGCCTTCGCACTGAC
CTTGATCCGTTACTTCTTTGCTCACCTGCCGTAACTCGCAATACCTCCTG
CGCCCGTGCTCTTGAGATTAAGCTCAAGCAGTACAACATTCCGCTTCCAG
ATCCTACTCATCATCGCAGTCCAACGGTTCGCATTGCCCACGCGATCTTT
AAGGATGTCAACTACGAAGCTTTCCAGACTGTCTACGGTCATATTGTTGA
GAAGCGCCCTCATCCATATTTGTCCATCACTACTGCTCCCGAAGATGTCC
CGAACTACCGTGTCACCTCTCACCCAGCCTCATCCCCGCAGCCACAGATA
CCCCAGTACAGTCTCATTCCCCTTCCGGTTCCCAGTCAACCAGTTCAGCT
CGCTCCTCCCCCGACATCTGGGACTCTTAGTCACTCTACTCAGCCTCCTT
CTACCGCAGCTCCGCACATTTCTGTCCACCAATCCACGCAAAATGTTCCA
CCCGCTACCAACCCCCTACATACTATCGCTCCTCTCCCAATCAACCAGCC
ACCCGTTAACCCCAATAAGTTCCTTCCCTCTCCTCCAAGATCACCCAACT
CCCTGAACCTCACTACTTTTAATGCATTTGTCTCTGGTTTAGGCGAATTT
CTAGATCGTCTCCAGGCCACTCATCAACAGCCTATTTCTGGCCCTGACGT
GCTCCGCACCCAACAGCCTCCAGGCCTATCCCCACAGCTTACCAACCCCA
CCACCCACAACGCCCCCCAGGGTACCACCCAACCTCTTCCTTATATAGCT
CCTGCTGCTCCCGTTCACAACATTGTTCCCCCTCCCCCCATTCTATCGCA
TATTCACCCTCAAACCCAGCTCCCACATAGGTCTCCTGTTCACCTTCCTT
CAACCGACCACGCCACTTCCTCCCCAATCGCTCCACCGAACCCTGCTCCC
CAAGTCCCTTCCGCTGTTCAGGGCTCCTCTCTCTTGGGTGTACCTCCTCT
ACCCCACCAACATCCTCAGCACCACACCCCACAACATTCCCACGGCCCCA
CACCTGCCACTCAGGGCCCCAGCATGCCCTTGTCCACTCATCGACCTTCC
CAACACAGAAATCTTAATATCCAATCTCGAGATTATGTTATCCAAAAGGC
TTCTACACAACTCTCCCATGTCTTCAAAGATGCAAAATTCAAAGGTCTCA
TCGAAGACTCTTGGACCAACACCCTTGTTGATTTTGAACACGTAGTCAAA
ACTGTCTACAAACTATCAGACCCCGAATGCCTTGACCTCCTCCCGCAAAT
CCTTGCCGATGAGGCCCGCGACTACTACAACCAAGAGATCCGTTCTCTCG
CCCGCGATTACCGCCAAGCTATTCAAATGCTCTCTTCCCGTTTTGACGAC
AGCACTACTCAACACCGCATCTTGATCTACCTACAGACACTGCGTATTGA
CGAATTCTTTGACGGCACGCGATCCATCAACGATGCTTTCAACAAACTCA
CCGCAGAGATACAGGCACATTTCCCACGCATTCCCAAAAACTTTCAGAGC
GATCACTTTAAACGTGAACTCCTAAAATCGGCTCTGGCCAAACAGGAATG
GTATCGGATTGAGCTACAACGACCACTAACTACCTATCCCACATACAACG
ATCTACGAGCCGCTCTGGCTGACTGTGCCCAACAGTAA