Gcaud8092.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8092.t1
Unique Name	Gcaud8092.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	410

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_211_length_36859_cov_4.689676	contig	NODE_211_length_36859_cov_4.689676:15195..16424 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704770.1
Preferred name	DGK1
PFAMs	DAGK_acc,DAGK_cat
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00017
KEGG ko	ko:K00411,ko:K00901
KEGG Reaction	R02240
KEGG Pathway	ko00190,ko00561,ko00564,ko01100,ko01110,ko02020,ko04070,ko04072,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05231,map00190,map00561,map00564,map01100,map01110,map02020,map04070,map04072,map04260,map04714,map04932,map05010,map05012,map05016,map05231
KEGG Module	M00151,M00152
GOs	GO:0000166,GO:0001775,GO:0003674,GO:0003824,GO:0004143,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005886,GO:0005911,GO:0006464,GO:0006468,GO:0006629,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0007205,GO:0007275,GO:0007596,GO:0007599,GO:0007610,GO:0007635,GO:0008144,GO:0008150,GO:0008152,GO:0008289,GO:0009266,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009611,GO:0009628,GO:0009653,GO:0009987,GO:0010646,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019538,GO:0019992,GO:0022622,GO:0023051,GO:0023052,GO:0030054,GO:0030168,GO:0030258,GO:0030425,GO:0030554,GO:0031974,GO:0031981,GO:0032101,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0036477,GO:0040011,GO:0040012,GO:0042048,GO:0042060,GO:0042221,GO:0042330,GO:0042995,GO:0043005,GO:0043052,GO:0043167,GO:0043168,GO:0043170,GO:0043197,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044255,GO:0044260,GO:0044267,GO:0044309,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045202,GO:0046777,GO:0046834,GO:0048167,GO:0048168,GO:0048169,GO:0048364,GO:0048366,GO:0048367,GO:0048583,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050804,GO:0050817,GO:0050878,GO:0050896,GO:0050920,GO:0050926,GO:0051716,GO:0055044,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0097447,GO:0097458,GO:0098794,GO:0099177,GO:0099402,GO:0120025,GO:0120038,GO:0140096,GO:1901265,GO:1901363,GO:1901564
Evalue	1.69e-55
EggNOG OGs	KOG1169@1\|root,KOG1169@2759\|Eukaryota
EC	1.10.2.2,2.7.1.107
Description	protein kinase C-activating G-protein coupled receptor signaling pathway
COG category	G
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8092	Gcaud8092	Gracilaria caudata M_176_S67 male	gene	NODE_211_length_36859_cov_4.689676 15195..16424 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8092.t1.start1	Gcaud8092.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_211_length_36859_cov_4.689676 15195..15197 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8092.t1.CDS1	Gcaud8092.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_211_length_36859_cov_4.689676 15195..16424 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8092.t1.exon1	Gcaud8092.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_211_length_36859_cov_4.689676 15195..16424 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8092.t1.stop1	Gcaud8092.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_211_length_36859_cov_4.689676 16422..16424 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8092.t1	Gcaud8092.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_211_length_36859_cov_4.689676 15195..16424 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_211_length_36859_cov_4.689676:15195..16424+
coding sequence from alignment at NODE_211_length_36859_cov_4.689676:15195..16424+

mRNA sequence

>Gcaud8092.t1 ID=Gcaud8092.t1|Name=Gcaud8092.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=410bp
LAAMNVMNMIAFVNPGAGGNMGNVVLELLKNQIGDENVFDIKADKGPDRG
LRLRAVDSPQHLICIVAGGDGTFSWVANTVEKQNLSHVHLLVIPLGSGND
MSRALGWGKKYPGERFITDAIKRINETPVDQMVLRRLDVWRLTAESDNTH
VDKDGIEHGARPLVCNYLSLGADAYVELRFNQMRWENPDKHTSRLGNFKA
HAMVGLNYMCLPKSRKIYVTDHIDTLLVDGVPIEIPAYLQALIFLNIPSY
GAGSQPWGSIRSDGKKDDVHNTRPVTDMFVDDQRFEVIGLKSLKHFGRIR
LFGSHGVRIAQGSKMSLTLKSESTPFQVDGEPWEQYGGTVTLEAGNKVGV
LKGPIWKASSKKRAKFNIKSNDIAEYVGDEDEEESPLEPENEAQQHEPVP
KTDAQESQA*

spliced messenger RNA

>Gcaud8092.t1 ID=Gcaud8092.t1|Name=Gcaud8092.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at NODE_211_length_36859_cov_4.689676:15195..16424+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCCGCCATGAACGTCATGAATATGATCGCCTTCGTCAACCCCGGCGC
CGGTGGTAACATGGGCAACGTCGTACTTGAACTGCTCAAGAATCAGATTG
GCGACGAGAACGTCTTCGACATCAAGGCTGATAAGGGTCCCGACCGCGGA
CTTCGTCTCCGCGCCGTCGACTCTCCACAGCACCTCATTTGCATCGTGGC
CGGTGGCGACGGTACGTTCTCGTGGGTTGCCAACACCGTGGAGAAGCAAA
ACTTGTCTCACGTTCATCTACTGGTCATTCCGTTGGGTTCCGGAAATGAC
ATGTCTCGTGCCTTGGGATGGGGGAAGAAGTACCCAGGCGAACGATTTAT
CACCGACGCTATCAAGAGAATTAATGAAACGCCTGTAGATCAAATGGTCT
TAAGGCGATTAGACGTGTGGAGACTCACTGCTGAATCAGACAACACGCAC
GTCGACAAGGATGGCATTGAACATGGCGCCAGGCCCTTGGTTTGTAACTA
CCTTAGTCTTGGCGCTGATGCGTACGTCGAACTGCGTTTCAATCAGATGC
GCTGGGAGAACCCAGATAAACATACCAGTCGCCTTGGCAACTTCAAGGCG
CATGCTATGGTCGGTCTAAACTACATGTGCCTACCGAAGAGCCGCAAGAT
TTACGTAACTGATCACATTGACACCCTGTTGGTCGATGGTGTGCCCATTG
AAATCCCTGCCTATCTCCAGGCGCTTATCTTCCTCAACATCCCAAGCTAC
GGTGCGGGCAGCCAGCCGTGGGGCTCAATCAGGTCTGACGGGAAGAAGGA
TGATGTGCATAACACCCGTCCTGTCACCGACATGTTTGTGGATGACCAGC
GTTTCGAGGTCATCGGACTGAAGAGTCTCAAGCATTTCGGTAGGATTCGC
CTGTTCGGCTCTCATGGCGTTCGAATTGCACAGGGTTCAAAAATGTCTCT
CACTCTCAAGTCTGAGTCCACGCCGTTTCAGGTTGACGGCGAGCCCTGGG
AACAGTATGGTGGCACCGTCACACTTGAAGCCGGAAACAAGGTCGGTGTC
CTTAAAGGTCCAATCTGGAAGGCTTCGTCGAAGAAACGGGCGAAGTTCAA
CATTAAGAGCAACGACATCGCTGAATACGTTGGCGATGAGGATGAAGAAG
AATCCCCTCTGGAGCCAGAGAATGAAGCCCAACAACATGAACCAGTGCCT
AAAACTGACGCTCAAGAATCTCAGGCCTAA

protein sequence of Gcaud8092.t1

>Gcaud8092.t1 ID=Gcaud8092.t1|Name=Gcaud8092.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=410bp
LAAMNVMNMIAFVNPGAGGNMGNVVLELLKNQIGDENVFDIKADKGPDRG
LRLRAVDSPQHLICIVAGGDGTFSWVANTVEKQNLSHVHLLVIPLGSGND
MSRALGWGKKYPGERFITDAIKRINETPVDQMVLRRLDVWRLTAESDNTH
VDKDGIEHGARPLVCNYLSLGADAYVELRFNQMRWENPDKHTSRLGNFKA
HAMVGLNYMCLPKSRKIYVTDHIDTLLVDGVPIEIPAYLQALIFLNIPSY
GAGSQPWGSIRSDGKKDDVHNTRPVTDMFVDDQRFEVIGLKSLKHFGRIR
LFGSHGVRIAQGSKMSLTLKSESTPFQVDGEPWEQYGGTVTLEAGNKVGV
LKGPIWKASSKKRAKFNIKSNDIAEYVGDEDEEESPLEPENEAQQHEPVP
KTDAQESQA*

mRNA from alignment at NODE_211_length_36859_cov_4.689676:15195..16424+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8092.t1 ID=Gcaud8092.t1|Name=Gcaud8092.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at NODE_211_length_36859_cov_4.689676:15195..16424+ (Gracilaria caudata M_176_S67 male)
TTGGCCGCCATGAACGTCATGAATATGATCGCCTTCGTCAACCCCGGCGC
CGGTGGTAACATGGGCAACGTCGTACTTGAACTGCTCAAGAATCAGATTG
GCGACGAGAACGTCTTCGACATCAAGGCTGATAAGGGTCCCGACCGCGGA
CTTCGTCTCCGCGCCGTCGACTCTCCACAGCACCTCATTTGCATCGTGGC
CGGTGGCGACGGTACGTTCTCGTGGGTTGCCAACACCGTGGAGAAGCAAA
ACTTGTCTCACGTTCATCTACTGGTCATTCCGTTGGGTTCCGGAAATGAC
ATGTCTCGTGCCTTGGGATGGGGGAAGAAGTACCCAGGCGAACGATTTAT
CACCGACGCTATCAAGAGAATTAATGAAACGCCTGTAGATCAAATGGTCT
TAAGGCGATTAGACGTGTGGAGACTCACTGCTGAATCAGACAACACGCAC
GTCGACAAGGATGGCATTGAACATGGCGCCAGGCCCTTGGTTTGTAACTA
CCTTAGTCTTGGCGCTGATGCGTACGTCGAACTGCGTTTCAATCAGATGC
GCTGGGAGAACCCAGATAAACATACCAGTCGCCTTGGCAACTTCAAGGCG
CATGCTATGGTCGGTCTAAACTACATGTGCCTACCGAAGAGCCGCAAGAT
TTACGTAACTGATCACATTGACACCCTGTTGGTCGATGGTGTGCCCATTG
AAATCCCTGCCTATCTCCAGGCGCTTATCTTCCTCAACATCCCAAGCTAC
GGTGCGGGCAGCCAGCCGTGGGGCTCAATCAGGTCTGACGGGAAGAAGGA
TGATGTGCATAACACCCGTCCTGTCACCGACATGTTTGTGGATGACCAGC
GTTTCGAGGTCATCGGACTGAAGAGTCTCAAGCATTTCGGTAGGATTCGC
CTGTTCGGCTCTCATGGCGTTCGAATTGCACAGGGTTCAAAAATGTCTCT
CACTCTCAAGTCTGAGTCCACGCCGTTTCAGGTTGACGGCGAGCCCTGGG
AACAGTATGGTGGCACCGTCACACTTGAAGCCGGAAACAAGGTCGGTGTC
CTTAAAGGTCCAATCTGGAAGGCTTCGTCGAAGAAACGGGCGAAGTTCAA
CATTAAGAGCAACGACATCGCTGAATACGTTGGCGATGAGGATGAAGAAG
AATCCCCTCTGGAGCCAGAGAATGAAGCCCAACAACATGAACCAGTGCCT
AAAACTGACGCTCAAGAATCTCAGGCCTAA

Coding sequence (CDS) from alignment at NODE_211_length_36859_cov_4.689676:15195..16424+

>Gcaud8092.t1 ID=Gcaud8092.t1|Name=Gcaud8092.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1230bp|location=Sequence derived from alignment at NODE_211_length_36859_cov_4.689676:15195..16424+ (Gracilaria caudata M_176_S67 male)
TTGGCCGCCATGAACGTCATGAATATGATCGCCTTCGTCAACCCCGGCGC
CGGTGGTAACATGGGCAACGTCGTACTTGAACTGCTCAAGAATCAGATTG
GCGACGAGAACGTCTTCGACATCAAGGCTGATAAGGGTCCCGACCGCGGA
CTTCGTCTCCGCGCCGTCGACTCTCCACAGCACCTCATTTGCATCGTGGC
CGGTGGCGACGGTACGTTCTCGTGGGTTGCCAACACCGTGGAGAAGCAAA
ACTTGTCTCACGTTCATCTACTGGTCATTCCGTTGGGTTCCGGAAATGAC
ATGTCTCGTGCCTTGGGATGGGGGAAGAAGTACCCAGGCGAACGATTTAT
CACCGACGCTATCAAGAGAATTAATGAAACGCCTGTAGATCAAATGGTCT
TAAGGCGATTAGACGTGTGGAGACTCACTGCTGAATCAGACAACACGCAC
GTCGACAAGGATGGCATTGAACATGGCGCCAGGCCCTTGGTTTGTAACTA
CCTTAGTCTTGGCGCTGATGCGTACGTCGAACTGCGTTTCAATCAGATGC
GCTGGGAGAACCCAGATAAACATACCAGTCGCCTTGGCAACTTCAAGGCG
CATGCTATGGTCGGTCTAAACTACATGTGCCTACCGAAGAGCCGCAAGAT
TTACGTAACTGATCACATTGACACCCTGTTGGTCGATGGTGTGCCCATTG
AAATCCCTGCCTATCTCCAGGCGCTTATCTTCCTCAACATCCCAAGCTAC
GGTGCGGGCAGCCAGCCGTGGGGCTCAATCAGGTCTGACGGGAAGAAGGA
TGATGTGCATAACACCCGTCCTGTCACCGACATGTTTGTGGATGACCAGC
GTTTCGAGGTCATCGGACTGAAGAGTCTCAAGCATTTCGGTAGGATTCGC
CTGTTCGGCTCTCATGGCGTTCGAATTGCACAGGGTTCAAAAATGTCTCT
CACTCTCAAGTCTGAGTCCACGCCGTTTCAGGTTGACGGCGAGCCCTGGG
AACAGTATGGTGGCACCGTCACACTTGAAGCCGGAAACAAGGTCGGTGTC
CTTAAAGGTCCAATCTGGAAGGCTTCGTCGAAGAAACGGGCGAAGTTCAA
CATTAAGAGCAACGACATCGCTGAATACGTTGGCGATGAGGATGAAGAAG
AATCCCCTCTGGAGCCAGAGAATGAAGCCCAACAACATGAACCAGTGCCT
AAAACTGACGCTCAAGAATCTCAGGCCTAA