Gcaud8088.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8088.t1
Unique NameGcaud8088.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1380_length_11029_cov_4.397605contigNODE_1380_length_11029_cov_4.397605:3086..3607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog34740.HMEL017868-PA
PFAMsDUF3421
Max annot lvl33208|Metazoa
Evalue2.96e-24
EggNOG OGs2D8M6@1|root,2TAQP@2759|Eukaryota,395R9@33154|Opisthokonta,3CA7A@33208|Metazoa,3DRC6@33213|Bilateria,427G6@6656|Arthropoda,3SXA2@50557|Insecta,443Z6@7088|Lepidoptera
DescriptionProtein of unknown function (DUF3421)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8088Gcaud8088Gracilaria caudata M_176_S67 malegeneNODE_1380_length_11029_cov_4.397605 3086..3607 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8088.t1.stop1Gcaud8088.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1380_length_11029_cov_4.397605 3086..3088 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8088.t1.CDS1Gcaud8088.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1380_length_11029_cov_4.397605 3086..3607 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8088.t1.exon1Gcaud8088.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1380_length_11029_cov_4.397605 3086..3607 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8088.t1.start1Gcaud8088.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1380_length_11029_cov_4.397605 3605..3607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8088.t1Gcaud8088.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1380_length_11029_cov_4.397605 3086..3607 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8088.t1 ID=Gcaud8088.t1|Name=Gcaud8088.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=174bp
MVHMYWQHFHSKSDDLPSHLVEGGRRYNGDPFYIARAVVEGELCIGKFYP
SRRIAKVPYGGKEHTFRSSCDLLVCDEPDMLKWVRMENGKTPFGAIAGGC
TKSGNTLFVGRAREDHEIIPGKIYPQHHRIYVSDDGKEVSHHHYEALAVK
HVVPHRRRHDHHHHHHDHYDHYD*
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spliced messenger RNA

>Gcaud8088.t1 ID=Gcaud8088.t1|Name=Gcaud8088.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=522bp|location=Sequence derived from alignment at NODE_1380_length_11029_cov_4.397605:3086..3607- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCACATGTACTGGCAGCACTTTCATAGCAAATCTGATGATCTGCC
AAGCCACCTTGTTGAAGGTGGACGAAGATACAACGGGGACCCGTTTTACA
TTGCTCGAGCAGTCGTGGAAGGAGAGCTTTGTATCGGAAAGTTCTACCCC
AGCCGAAGAATAGCAAAGGTACCCTATGGAGGAAAGGAACACACATTCAG
GTCGTCGTGTGATTTACTGGTTTGTGACGAACCTGATATGCTGAAATGGG
TGAGAATGGAAAATGGCAAGACTCCATTTGGTGCTATTGCTGGTGGTTGT
ACGAAGAGTGGTAATACGTTGTTCGTCGGACGCGCCAGAGAAGACCATGA
GATAATACCGGGTAAGATCTATCCGCAGCATCATCGCATTTACGTCAGTG
ATGACGGAAAGGAAGTCTCCCATCATCACTACGAAGCGCTTGCAGTGAAG
CATGTGGTTCCGCACCGACGCCGCCATGATCACCATCACCACCATCATGA
CCATTATGACCATTATGACTAA
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protein sequence of Gcaud8088.t1

>Gcaud8088.t1 ID=Gcaud8088.t1|Name=Gcaud8088.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=174bp
MVHMYWQHFHSKSDDLPSHLVEGGRRYNGDPFYIARAVVEGELCIGKFYP
SRRIAKVPYGGKEHTFRSSCDLLVCDEPDMLKWVRMENGKTPFGAIAGGC
TKSGNTLFVGRAREDHEIIPGKIYPQHHRIYVSDDGKEVSHHHYEALAVK
HVVPHRRRHDHHHHHHDHYDHYD*
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mRNA from alignment at NODE_1380_length_11029_cov_4.397605:3086..3607-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8088.t1 ID=Gcaud8088.t1|Name=Gcaud8088.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=522bp|location=Sequence derived from alignment at NODE_1380_length_11029_cov_4.397605:3086..3607- (Gracilaria caudata M_176_S67 male)
ATGGTTCACATGTACTGGCAGCACTTTCATAGCAAATCTGATGATCTGCC
AAGCCACCTTGTTGAAGGTGGACGAAGATACAACGGGGACCCGTTTTACA
TTGCTCGAGCAGTCGTGGAAGGAGAGCTTTGTATCGGAAAGTTCTACCCC
AGCCGAAGAATAGCAAAGGTACCCTATGGAGGAAAGGAACACACATTCAG
GTCGTCGTGTGATTTACTGGTTTGTGACGAACCTGATATGCTGAAATGGG
TGAGAATGGAAAATGGCAAGACTCCATTTGGTGCTATTGCTGGTGGTTGT
ACGAAGAGTGGTAATACGTTGTTCGTCGGACGCGCCAGAGAAGACCATGA
GATAATACCGGGTAAGATCTATCCGCAGCATCATCGCATTTACGTCAGTG
ATGACGGAAAGGAAGTCTCCCATCATCACTACGAAGCGCTTGCAGTGAAG
CATGTGGTTCCGCACCGACGCCGCCATGATCACCATCACCACCATCATGA
CCATTATGACCATTATGACTAA
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Coding sequence (CDS) from alignment at NODE_1380_length_11029_cov_4.397605:3086..3607-

>Gcaud8088.t1 ID=Gcaud8088.t1|Name=Gcaud8088.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=522bp|location=Sequence derived from alignment at NODE_1380_length_11029_cov_4.397605:3086..3607- (Gracilaria caudata M_176_S67 male)
ATGGTTCACATGTACTGGCAGCACTTTCATAGCAAATCTGATGATCTGCC
AAGCCACCTTGTTGAAGGTGGACGAAGATACAACGGGGACCCGTTTTACA
TTGCTCGAGCAGTCGTGGAAGGAGAGCTTTGTATCGGAAAGTTCTACCCC
AGCCGAAGAATAGCAAAGGTACCCTATGGAGGAAAGGAACACACATTCAG
GTCGTCGTGTGATTTACTGGTTTGTGACGAACCTGATATGCTGAAATGGG
TGAGAATGGAAAATGGCAAGACTCCATTTGGTGCTATTGCTGGTGGTTGT
ACGAAGAGTGGTAATACGTTGTTCGTCGGACGCGCCAGAGAAGACCATGA
GATAATACCGGGTAAGATCTATCCGCAGCATCATCGCATTTACGTCAGTG
ATGACGGAAAGGAAGTCTCCCATCATCACTACGAAGCGCTTGCAGTGAAG
CATGTGGTTCCGCACCGACGCCGCCATGATCACCATCACCACCATCATGA
CCATTATGACCATTATGACTAA
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