Gcaud8087.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8087.t1
Unique Name	Gcaud8087.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	662

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1903_length_7790_cov_3.949994	contig	NODE_1903_length_7790_cov_3.949994:2773..4758 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	264402.Cagra.2007s0020.1.p
PFAMs	CLTH
Max annot lvl	35493\|Streptophyta
Evalue	1.19e-17
EggNOG OGs	KOG2659@1\|root,KOG2659@2759\|Eukaryota,37PWP@33090\|Viridiplantae,3GEJR@35493\|Streptophyta,3HP6J@3699\|Brassicales
Description	BEST Arabidopsis thaliana protein match is
COG category	Z

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8087	Gcaud8087	Gracilaria caudata M_176_S67 male	gene	NODE_1903_length_7790_cov_3.949994 2773..4758 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8087.t1.stop1	Gcaud8087.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1903_length_7790_cov_3.949994 2773..2775 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8087.t1.CDS1	Gcaud8087.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1903_length_7790_cov_3.949994 2773..4758 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8087.t1.exon1	Gcaud8087.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1903_length_7790_cov_3.949994 2773..4758 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8087.t1.start1	Gcaud8087.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1903_length_7790_cov_3.949994 4756..4758 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8087.t1	Gcaud8087.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1903_length_7790_cov_3.949994 2773..4758 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1903_length_7790_cov_3.949994:2773..4758-
coding sequence from alignment at NODE_1903_length_7790_cov_3.949994:2773..4758-

mRNA sequence

>Gcaud8087.t1 ID=Gcaud8087.t1|Name=Gcaud8087.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=662bp
MIDLDVLDKLAKDHLQFEVSCSKSHRDDTKFDISSDSGVVCALHRIRDLV
MKGRVEDAVPICEALCAGSISDPRLQLDIRIHKFCELIYITETVRATDET
QYAKAVHEALQYAQQLALFALNAFPEAYELFTEAMMFFALPEQSASPQAI
QKRRERIANQLVSLARFSVCARDSCLSFLMRYLILIYVQFNTPCVPHDPT
KANTVDSLVSELLCCEPDKAVNETLIKWKTDESRPRRLESIGAYNEADIQ
ALRERASITRQESLESLAFADGNLVHAMRNELGRVVIKRERMRRMVVEYC
AARGLEGFHLDADMSDEPYAQVFMPFRTDQTGISLALPSYCMDATCIDMY
RSMKHVRELTDQDAKEGVLERICVIESILGTTCTDSLKFKMAQQKILFHL
RKRSFEEAMLISQTVLGPLAALHSELFPSLMDTMSVLVFARGGDTILCGE
SGGQKPCSDRCNCAEALRGQSVAGSNAQEKNCMSMSVERMKPDSTPQSEQ
SCSFEEVMRGCTDRVTTSCSFVSMIEEAYVAFQRQHGEPDMVRLLNALLL
AHQNWEKQNMMSDKLAESFAIPQVLGHGKETSLGDDRSNRAQDVENKSHA
NAISGSSGDARSRGPESREQTILVLMEFMDMTRAEAIAVLRNHPQAASTQ
SILDSLLGSLM*

spliced messenger RNA

>Gcaud8087.t1 ID=Gcaud8087.t1|Name=Gcaud8087.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1986bp|location=Sequence derived from alignment at NODE_1903_length_7790_cov_3.949994:2773..4758- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGATCTGGATGTTCTGGATAAGCTTGCCAAAGACCACCTGCAATT
CGAGGTCAGCTGCTCTAAATCGCATCGCGATGACACTAAGTTCGATATTT
CCTCCGATTCTGGCGTTGTTTGCGCCCTTCACAGAATCCGTGACTTAGTA
ATGAAAGGGCGCGTTGAAGACGCCGTTCCCATCTGCGAAGCACTCTGCGC
GGGTTCTATAAGTGACCCGCGCCTCCAACTGGACATCCGCATTCATAAAT
TTTGCGAGCTCATCTACATCACGGAGACCGTTCGTGCCACCGATGAAACT
CAGTACGCAAAGGCAGTTCATGAAGCGTTGCAATATGCCCAACAGCTTGC
ATTATTTGCGCTGAACGCGTTCCCAGAGGCATACGAACTATTCACGGAAG
CAATGATGTTCTTCGCGCTTCCGGAACAAAGTGCGTCTCCTCAAGCCATT
CAGAAACGCCGGGAACGAATCGCAAACCAGCTGGTGTCTTTAGCACGCTT
TTCGGTTTGTGCCAGGGATTCATGCCTCTCCTTCCTCATGCGCTATCTAA
TATTGATATATGTGCAGTTCAACACTCCTTGCGTGCCTCACGATCCTACC
AAAGCCAATACTGTCGATTCTCTTGTATCGGAATTACTGTGCTGTGAACC
TGACAAAGCGGTCAACGAAACGCTTATTAAATGGAAAACAGATGAGAGCC
GCCCGCGTCGTCTCGAATCAATAGGCGCTTACAATGAAGCCGATATTCAA
GCTCTTCGTGAGAGGGCGAGTATAACGAGGCAGGAATCATTAGAAAGTCT
GGCATTCGCAGACGGAAATCTTGTGCACGCCATGAGGAACGAACTCGGCC
GCGTTGTGATTAAAAGAGAGCGTATGCGAAGAATGGTGGTTGAATACTGT
GCAGCACGAGGTCTGGAAGGGTTTCATCTAGATGCCGATATGAGCGATGA
ACCGTATGCACAGGTGTTTATGCCGTTCAGGACAGACCAAACAGGAATAT
CATTAGCACTACCATCGTACTGCATGGATGCTACCTGCATTGACATGTAC
CGAAGCATGAAGCATGTACGAGAGCTAACAGACCAAGACGCCAAGGAGGG
TGTCTTGGAACGTATTTGCGTCATTGAATCAATACTTGGGACAACGTGCA
CCGATTCACTGAAGTTCAAAATGGCTCAGCAGAAGATTCTCTTTCATCTG
CGCAAAAGAAGTTTTGAGGAAGCAATGTTGATCTCACAGACCGTTCTTGG
GCCGCTCGCCGCTTTGCATTCAGAATTGTTTCCGTCACTGATGGACACAA
TGTCTGTACTCGTATTCGCAAGGGGTGGTGACACCATTTTGTGCGGCGAG
AGTGGAGGTCAGAAACCTTGTTCGGATCGATGTAATTGTGCAGAGGCACT
ACGAGGACAGTCAGTGGCCGGCTCAAATGCTCAGGAGAAAAACTGCATGT
CGATGAGTGTGGAGAGAATGAAACCGGATTCGACACCACAGAGTGAGCAA
AGCTGTTCTTTTGAAGAGGTAATGCGTGGCTGCACCGACCGAGTTACTAC
AAGTTGCTCTTTTGTATCCATGATTGAGGAGGCATACGTGGCGTTTCAAA
GGCAGCATGGGGAACCAGATATGGTACGATTGCTAAACGCGTTGCTGCTA
GCGCATCAGAACTGGGAAAAGCAGAACATGATGAGTGATAAACTGGCAGA
ATCGTTTGCCATACCACAGGTTCTCGGACACGGGAAAGAGACGAGTTTGG
GGGATGATAGGAGCAATCGTGCTCAAGACGTCGAGAACAAATCACATGCA
AACGCGATTTCTGGAAGCAGTGGCGACGCTCGCTCTCGCGGGCCAGAATC
AAGAGAGCAAACGATACTGGTTCTAATGGAATTCATGGACATGACAAGGG
CCGAGGCAATTGCAGTGCTGCGAAACCACCCCCAGGCTGCAAGTACGCAG
TCTATACTGGACTCGCTGTTGGGATCGTTGATGTGA

protein sequence of Gcaud8087.t1

>Gcaud8087.t1 ID=Gcaud8087.t1|Name=Gcaud8087.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=662bp
MIDLDVLDKLAKDHLQFEVSCSKSHRDDTKFDISSDSGVVCALHRIRDLV
MKGRVEDAVPICEALCAGSISDPRLQLDIRIHKFCELIYITETVRATDET
QYAKAVHEALQYAQQLALFALNAFPEAYELFTEAMMFFALPEQSASPQAI
QKRRERIANQLVSLARFSVCARDSCLSFLMRYLILIYVQFNTPCVPHDPT
KANTVDSLVSELLCCEPDKAVNETLIKWKTDESRPRRLESIGAYNEADIQ
ALRERASITRQESLESLAFADGNLVHAMRNELGRVVIKRERMRRMVVEYC
AARGLEGFHLDADMSDEPYAQVFMPFRTDQTGISLALPSYCMDATCIDMY
RSMKHVRELTDQDAKEGVLERICVIESILGTTCTDSLKFKMAQQKILFHL
RKRSFEEAMLISQTVLGPLAALHSELFPSLMDTMSVLVFARGGDTILCGE
SGGQKPCSDRCNCAEALRGQSVAGSNAQEKNCMSMSVERMKPDSTPQSEQ
SCSFEEVMRGCTDRVTTSCSFVSMIEEAYVAFQRQHGEPDMVRLLNALLL
AHQNWEKQNMMSDKLAESFAIPQVLGHGKETSLGDDRSNRAQDVENKSHA
NAISGSSGDARSRGPESREQTILVLMEFMDMTRAEAIAVLRNHPQAASTQ
SILDSLLGSLM*

mRNA from alignment at NODE_1903_length_7790_cov_3.949994:2773..4758-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8087.t1 ID=Gcaud8087.t1|Name=Gcaud8087.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1986bp|location=Sequence derived from alignment at NODE_1903_length_7790_cov_3.949994:2773..4758- (Gracilaria caudata M_176_S67 male)
ATGATTGATCTGGATGTTCTGGATAAGCTTGCCAAAGACCACCTGCAATT
CGAGGTCAGCTGCTCTAAATCGCATCGCGATGACACTAAGTTCGATATTT
CCTCCGATTCTGGCGTTGTTTGCGCCCTTCACAGAATCCGTGACTTAGTA
ATGAAAGGGCGCGTTGAAGACGCCGTTCCCATCTGCGAAGCACTCTGCGC
GGGTTCTATAAGTGACCCGCGCCTCCAACTGGACATCCGCATTCATAAAT
TTTGCGAGCTCATCTACATCACGGAGACCGTTCGTGCCACCGATGAAACT
CAGTACGCAAAGGCAGTTCATGAAGCGTTGCAATATGCCCAACAGCTTGC
ATTATTTGCGCTGAACGCGTTCCCAGAGGCATACGAACTATTCACGGAAG
CAATGATGTTCTTCGCGCTTCCGGAACAAAGTGCGTCTCCTCAAGCCATT
CAGAAACGCCGGGAACGAATCGCAAACCAGCTGGTGTCTTTAGCACGCTT
TTCGGTTTGTGCCAGGGATTCATGCCTCTCCTTCCTCATGCGCTATCTAA
TATTGATATATGTGCAGTTCAACACTCCTTGCGTGCCTCACGATCCTACC
AAAGCCAATACTGTCGATTCTCTTGTATCGGAATTACTGTGCTGTGAACC
TGACAAAGCGGTCAACGAAACGCTTATTAAATGGAAAACAGATGAGAGCC
GCCCGCGTCGTCTCGAATCAATAGGCGCTTACAATGAAGCCGATATTCAA
GCTCTTCGTGAGAGGGCGAGTATAACGAGGCAGGAATCATTAGAAAGTCT
GGCATTCGCAGACGGAAATCTTGTGCACGCCATGAGGAACGAACTCGGCC
GCGTTGTGATTAAAAGAGAGCGTATGCGAAGAATGGTGGTTGAATACTGT
GCAGCACGAGGTCTGGAAGGGTTTCATCTAGATGCCGATATGAGCGATGA
ACCGTATGCACAGGTGTTTATGCCGTTCAGGACAGACCAAACAGGAATAT
CATTAGCACTACCATCGTACTGCATGGATGCTACCTGCATTGACATGTAC
CGAAGCATGAAGCATGTACGAGAGCTAACAGACCAAGACGCCAAGGAGGG
TGTCTTGGAACGTATTTGCGTCATTGAATCAATACTTGGGACAACGTGCA
CCGATTCACTGAAGTTCAAAATGGCTCAGCAGAAGATTCTCTTTCATCTG
CGCAAAAGAAGTTTTGAGGAAGCAATGTTGATCTCACAGACCGTTCTTGG
GCCGCTCGCCGCTTTGCATTCAGAATTGTTTCCGTCACTGATGGACACAA
TGTCTGTACTCGTATTCGCAAGGGGTGGTGACACCATTTTGTGCGGCGAG
AGTGGAGGTCAGAAACCTTGTTCGGATCGATGTAATTGTGCAGAGGCACT
ACGAGGACAGTCAGTGGCCGGCTCAAATGCTCAGGAGAAAAACTGCATGT
CGATGAGTGTGGAGAGAATGAAACCGGATTCGACACCACAGAGTGAGCAA
AGCTGTTCTTTTGAAGAGGTAATGCGTGGCTGCACCGACCGAGTTACTAC
AAGTTGCTCTTTTGTATCCATGATTGAGGAGGCATACGTGGCGTTTCAAA
GGCAGCATGGGGAACCAGATATGGTACGATTGCTAAACGCGTTGCTGCTA
GCGCATCAGAACTGGGAAAAGCAGAACATGATGAGTGATAAACTGGCAGA
ATCGTTTGCCATACCACAGGTTCTCGGACACGGGAAAGAGACGAGTTTGG
GGGATGATAGGAGCAATCGTGCTCAAGACGTCGAGAACAAATCACATGCA
AACGCGATTTCTGGAAGCAGTGGCGACGCTCGCTCTCGCGGGCCAGAATC
AAGAGAGCAAACGATACTGGTTCTAATGGAATTCATGGACATGACAAGGG
CCGAGGCAATTGCAGTGCTGCGAAACCACCCCCAGGCTGCAAGTACGCAG
TCTATACTGGACTCGCTGTTGGGATCGTTGATGTGA

Coding sequence (CDS) from alignment at NODE_1903_length_7790_cov_3.949994:2773..4758-

>Gcaud8087.t1 ID=Gcaud8087.t1|Name=Gcaud8087.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1986bp|location=Sequence derived from alignment at NODE_1903_length_7790_cov_3.949994:2773..4758- (Gracilaria caudata M_176_S67 male)
ATGATTGATCTGGATGTTCTGGATAAGCTTGCCAAAGACCACCTGCAATT
CGAGGTCAGCTGCTCTAAATCGCATCGCGATGACACTAAGTTCGATATTT
CCTCCGATTCTGGCGTTGTTTGCGCCCTTCACAGAATCCGTGACTTAGTA
ATGAAAGGGCGCGTTGAAGACGCCGTTCCCATCTGCGAAGCACTCTGCGC
GGGTTCTATAAGTGACCCGCGCCTCCAACTGGACATCCGCATTCATAAAT
TTTGCGAGCTCATCTACATCACGGAGACCGTTCGTGCCACCGATGAAACT
CAGTACGCAAAGGCAGTTCATGAAGCGTTGCAATATGCCCAACAGCTTGC
ATTATTTGCGCTGAACGCGTTCCCAGAGGCATACGAACTATTCACGGAAG
CAATGATGTTCTTCGCGCTTCCGGAACAAAGTGCGTCTCCTCAAGCCATT
CAGAAACGCCGGGAACGAATCGCAAACCAGCTGGTGTCTTTAGCACGCTT
TTCGGTTTGTGCCAGGGATTCATGCCTCTCCTTCCTCATGCGCTATCTAA
TATTGATATATGTGCAGTTCAACACTCCTTGCGTGCCTCACGATCCTACC
AAAGCCAATACTGTCGATTCTCTTGTATCGGAATTACTGTGCTGTGAACC
TGACAAAGCGGTCAACGAAACGCTTATTAAATGGAAAACAGATGAGAGCC
GCCCGCGTCGTCTCGAATCAATAGGCGCTTACAATGAAGCCGATATTCAA
GCTCTTCGTGAGAGGGCGAGTATAACGAGGCAGGAATCATTAGAAAGTCT
GGCATTCGCAGACGGAAATCTTGTGCACGCCATGAGGAACGAACTCGGCC
GCGTTGTGATTAAAAGAGAGCGTATGCGAAGAATGGTGGTTGAATACTGT
GCAGCACGAGGTCTGGAAGGGTTTCATCTAGATGCCGATATGAGCGATGA
ACCGTATGCACAGGTGTTTATGCCGTTCAGGACAGACCAAACAGGAATAT
CATTAGCACTACCATCGTACTGCATGGATGCTACCTGCATTGACATGTAC
CGAAGCATGAAGCATGTACGAGAGCTAACAGACCAAGACGCCAAGGAGGG
TGTCTTGGAACGTATTTGCGTCATTGAATCAATACTTGGGACAACGTGCA
CCGATTCACTGAAGTTCAAAATGGCTCAGCAGAAGATTCTCTTTCATCTG
CGCAAAAGAAGTTTTGAGGAAGCAATGTTGATCTCACAGACCGTTCTTGG
GCCGCTCGCCGCTTTGCATTCAGAATTGTTTCCGTCACTGATGGACACAA
TGTCTGTACTCGTATTCGCAAGGGGTGGTGACACCATTTTGTGCGGCGAG
AGTGGAGGTCAGAAACCTTGTTCGGATCGATGTAATTGTGCAGAGGCACT
ACGAGGACAGTCAGTGGCCGGCTCAAATGCTCAGGAGAAAAACTGCATGT
CGATGAGTGTGGAGAGAATGAAACCGGATTCGACACCACAGAGTGAGCAA
AGCTGTTCTTTTGAAGAGGTAATGCGTGGCTGCACCGACCGAGTTACTAC
AAGTTGCTCTTTTGTATCCATGATTGAGGAGGCATACGTGGCGTTTCAAA
GGCAGCATGGGGAACCAGATATGGTACGATTGCTAAACGCGTTGCTGCTA
GCGCATCAGAACTGGGAAAAGCAGAACATGATGAGTGATAAACTGGCAGA
ATCGTTTGCCATACCACAGGTTCTCGGACACGGGAAAGAGACGAGTTTGG
GGGATGATAGGAGCAATCGTGCTCAAGACGTCGAGAACAAATCACATGCA
AACGCGATTTCTGGAAGCAGTGGCGACGCTCGCTCTCGCGGGCCAGAATC
AAGAGAGCAAACGATACTGGTTCTAATGGAATTCATGGACATGACAAGGG
CCGAGGCAATTGCAGTGCTGCGAAACCACCCCCAGGCTGCAAGTACGCAG
TCTATACTGGACTCGCTGTTGGGATCGTTGATGTGA