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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 45157.CMP271CT |
| PFAMs | Creatinase_N,Creatinase_N_2,Peptidase_M24,Peptidase_M24_C,Pro_isomerase |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K01262,ko:K03768 |
| Evalue | 2.06e-32 |
| EggNOG OGs | COG0652@1|root,KOG0880@2759|Eukaryota |
| EC | 3.4.11.9,5.2.1.8 |
| Description | peptidyl-prolyl cis-trans isomerase activity |
| COG category | O |
| BRITE | ko00000,ko01000,ko01002,ko03110 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8084.t1.start1 | Gcaud8084.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1375_length_11068_cov_4.224287 8359..8361 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8084.t1.stop1 | Gcaud8084.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1375_length_11068_cov_4.224287 9258..9260 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8084.t1 ID=Gcaud8084.t1|Name=Gcaud8084.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=223bp
MLLLSVAIPSSARVQAAPDVGAGMADSDRAFFDISVAGRPVGRIVIQLFA
DAAPVSVDTFKKLVEGTLRNRSGRTAGYKYAQASRVISGKRVELGRVKQI
DTLNQQSGVPQRQIVTVQVPENRDSNQLLHDSKGLVSVQRGGSFEFSVML
APDSELDDSHLVIGRVVDGMNVVDVLGKVPTNRKTIRDGYRNIGKAIGDA
RAKVDLEDKPLQKIQITNCGLL* back to topspliced messenger RNA >Gcaud8084.t1 ID=Gcaud8084.t1|Name=Gcaud8084.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=669bp|location=Sequence derived from alignment at NODE_1375_length_11068_cov_4.224287:8359..9260+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCTATTGCTAAGTGTTGCGATCCCTTCCTCGGCTCGCGTGCAGGCGGC
GCCGGACGTTGGTGCTGGCATGGCCGACTCAGACCGCGCGTTCTTTGACA
TCTCAGTGGCGGGGCGACCAGTTGGGCGCATCGTGATACAGCTATTTGCC
GATGCGGCTCCTGTTAGCGTGGATACGTTCAAGAAACTTGTAGAGGGAAC
TCTTCGCAATCGCTCGGGGCGTACTGCTGGGTACAAGTACGCGCAGGCTT
CTAGAGTGATTTCGGGAAAACGCGTTGAACTGGGTAGAGTGAAGCAGATA
GATACGCTCAACCAGCAGTCCGGTGTTCCGCAGCGCCAAATTGTCACTGT
TCAAGTTCCCGAGAATCGCGATTCTAACCAGTTATTGCACGATAGCAAGG
GATTAGTATCTGTTCAGCGAGGGGGGAGTTTCGAATTCTCGGTAATGTTG
GCGCCTGATTCTGAACTCGATGACAGCCATTTGGTCATCGGTCGCGTTGT
TGATGGTATGAATGTAGTGGACGTTTTAGGAAAGGTCCCTACAAATCGAA
AGACCATTCGCGACGGTTACAGGAATATTGGTAAGGCTATTGGCGATGCG
CGCGCAAAGGTAGACTTAGAGGACAAGCCTTTACAGAAGATTCAGATTAC
GAACTGCGGATTGTTGTGA back to topprotein sequence of Gcaud8084.t1 >Gcaud8084.t1 ID=Gcaud8084.t1|Name=Gcaud8084.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=223bp
MLLLSVAIPSSARVQAAPDVGAGMADSDRAFFDISVAGRPVGRIVIQLFA
DAAPVSVDTFKKLVEGTLRNRSGRTAGYKYAQASRVISGKRVELGRVKQI
DTLNQQSGVPQRQIVTVQVPENRDSNQLLHDSKGLVSVQRGGSFEFSVML
APDSELDDSHLVIGRVVDGMNVVDVLGKVPTNRKTIRDGYRNIGKAIGDA
RAKVDLEDKPLQKIQITNCGLL* back to topmRNA from alignment at NODE_1375_length_11068_cov_4.224287:8359..9260+ Legend: start_codonpolypeptideCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8084.t1 ID=Gcaud8084.t1|Name=Gcaud8084.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=902bp|location=Sequence derived from alignment at NODE_1375_length_11068_cov_4.224287:8359..9260+ (Gracilaria caudata M_176_S67 male)
ATGCTATTGCTAAGTGTTGCGATCCCTTCCTCGGCTCGCGTGCAGGCGGC
GCCGGACGTTGGTGCTGGCATGGCCGACTCAGACCGCGCGTTCTTTGACA
TCTCAGTGGCGGGGCGACCAGTTGGGCGCATCGTGATACAGCTATTTGCC
GATGCGGCTCCTGTTAGCGTGGATACGTTCAAGAAACTTGTAGAGGGAAC
TCTTCGCAATCGCTCGGGGCGTACTGCTGGGTACAAGTACGCGCAGGCTT
CTAGAGTGATTTCGGGAAAACGCGTTGAACTGGGTAGAGTGAAGCAGATA
GATACGCTCAACCAGCAGTCCGGTGTTCCGCAGCGCCAAATTGTCACTGT
TCAAGTTCCCGAGAATCGCGATTCTAACCAGTTATTGCACGATAGCAAGG
GATTAGTATCTGTTCAGCGAGGGGGGAGTTTCGAATTCTCGGTAATGTTG
GCGCCTGATTCTGAACTCGATGACAGCCATTTGGTCATCGGTCGCGTTGT
TGATGGTATGAATGTAGTGGACGTTTTAGGAAAGGTCCCTACAAATCGAA
AGACCATTCGCGACGGTTACAGGAATATTGGTAAGGCTATTGGCGATGCG
CGCGCAAAGGTAGACGTGAGTTGTGCTCCTCTTTTGTTTGCCCGCGCGTC
GTCTGCTTTGCGGCTCTAACATTTTGTTGCTTTTGTTTGTTCTGCACACC
GCCTACTCCTGTTTCCTGTTCGCTCTATTACTGATATCTAGTTAGAGGAC
AAGGTACGTTTTCACCTCCTGATGGGTCTTCGCGTATGCCAACATAACAA
AGCCACTAACGCACAAGCGCGTATTTCGGTATTCTGCGTTCGCGGTGCGC
AACACAACAGCCTTTACAGAAGATTCAGATTACGAACTGCGGATTGTTGT
GA back to topCoding sequence (CDS) from alignment at NODE_1375_length_11068_cov_4.224287:8359..9260+ >Gcaud8084.t1 ID=Gcaud8084.t1|Name=Gcaud8084.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=669bp|location=Sequence derived from alignment at NODE_1375_length_11068_cov_4.224287:8359..9260+ (Gracilaria caudata M_176_S67 male)
ATGCTATTGCTAAGTGTTGCGATCCCTTCCTCGGCTCGCGTGCAGGCGGC
GCCGGACGTTGGTGCTGGCATGGCCGACTCAGACCGCGCGTTCTTTGACA
TCTCAGTGGCGGGGCGACCAGTTGGGCGCATCGTGATACAGCTATTTGCC
GATGCGGCTCCTGTTAGCGTGGATACGTTCAAGAAACTTGTAGAGGGAAC
TCTTCGCAATCGCTCGGGGCGTACTGCTGGGTACAAGTACGCGCAGGCTT
CTAGAGTGATTTCGGGAAAACGCGTTGAACTGGGTAGAGTGAAGCAGATA
GATACGCTCAACCAGCAGTCCGGTGTTCCGCAGCGCCAAATTGTCACTGT
TCAAGTTCCCGAGAATCGCGATTCTAACCAGTTATTGCACGATAGCAAGG
GATTAGTATCTGTTCAGCGAGGGGGGAGTTTCGAATTCTCGGTAATGTTG
GCGCCTGATTCTGAACTCGATGACAGCCATTTGGTCATCGGTCGCGTTGT
TGATGGTATGAATGTAGTGGACGTTTTAGGAAAGGTCCCTACAAATCGAA
AGACCATTCGCGACGGTTACAGGAATATTGGTAAGGCTATTGGCGATGCG
CGCGCAAAGGTAGACTTAGAGGACAAGCCTTTACAGAAGATTCAGATTAC
GAACTGCGGATTGTTGTGA back to top
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