Gcaud8073.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8073.t1
Unique Name	Gcaud8073.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	579

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1189_length_12861_cov_4.838371	contig	NODE_1189_length_12861_cov_4.838371:3260..4996 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1122605.KB893637_gene3164
PFAMs	Amino_oxidase
Max annot lvl	976\|Bacteroidetes
Evalue	9.54e-99
EggNOG OGs	COG1231@1\|root,COG1231@2\|Bacteria,4NJCS@976\|Bacteroidetes
Description	Flavin containing amine oxidoreductase
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8073	Gcaud8073	Gracilaria caudata M_176_S67 male	gene	NODE_1189_length_12861_cov_4.838371 3260..4996 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8073.t1.start1	Gcaud8073.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1189_length_12861_cov_4.838371 3260..3262 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8073.t1.CDS1	Gcaud8073.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1189_length_12861_cov_4.838371 3260..4996 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8073.t1.exon1	Gcaud8073.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1189_length_12861_cov_4.838371 3260..4996 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8073.t1.stop1	Gcaud8073.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1189_length_12861_cov_4.838371 4994..4996 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8073.t1	Gcaud8073.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1189_length_12861_cov_4.838371 3260..4996 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1189_length_12861_cov_4.838371:3260..4996+
coding sequence from alignment at NODE_1189_length_12861_cov_4.838371:3260..4996+

mRNA sequence

>Gcaud8073.t1 ID=Gcaud8073.t1|Name=Gcaud8073.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=579bp
MTCNGYQNCCDKAANPNFPTLGNMCGSDTQQVDVAIIGAGAAGLYCAYRL
LRDRNSDRSPPVSKIALFEAEQRVGGRVFSTFLTPNSKPVELGAMRYLSN
HKIIHSLVQNVIAKHSDKQSVDFGFRNAFHYTDGARLTPKSRRHDYEEPQ
PDLYTLNGEIREGMSYDEIMEMVALQVLSADGCLEKLRNESKNCHKRWND
LKPTLRYRFPGSYQNWYVNDMSLEQLLLDRVGEKTYGFLRQSDAFDSTYA
ASASYGLETYVEEFTAESEYRTVEGGLGVVMSFLADEIRNMGGTIYLGHQ
LTKFVRANPAIAKYELSLHDKLKNCHHKFFANNLILCIPKRGLEQLNRNS
HLFETDKARGGAFEKALYSVREVPTLKLVLGFDQPWWEKSIGRYGKTVTN
LPIRQSFYFGHGNANSSLSTVLVSYTDMEGCAFWQHLQNRKEDESNNRRI
GGSDLQKLGYEKANPFVVNEALTQLQKVHGENITISRPVTSAFMDWSKDP
HGGGYHHWKPGAKGWEVAPFMRRPFVDENIFIAGEAFSDRHSWIEGAFCS
AELVLREWFFLKPPEWLEEEEEQYYLGW*

spliced messenger RNA

>Gcaud8073.t1 ID=Gcaud8073.t1|Name=Gcaud8073.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1737bp|location=Sequence derived from alignment at NODE_1189_length_12861_cov_4.838371:3260..4996+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTGCAACGGCTACCAAAACTGTTGTGATAAGGCTGCTAATCCGAA
CTTTCCTACCCTTGGTAATATGTGTGGCAGTGATACGCAGCAAGTGGATG
TCGCCATCATCGGCGCTGGTGCCGCAGGTCTATATTGCGCTTATCGCTTG
TTGAGGGACAGAAATTCTGATCGAAGTCCGCCAGTCTCCAAAATTGCTTT
GTTTGAAGCTGAACAGCGAGTTGGTGGTCGAGTTTTCTCCACGTTCTTGA
CCCCTAACTCTAAGCCTGTAGAACTGGGTGCCATGCGTTATTTATCTAAT
CACAAGATAATCCATTCTTTGGTGCAGAATGTTATTGCAAAACATTCAGA
TAAGCAGAGCGTAGATTTTGGCTTTCGAAATGCTTTTCACTATACAGACG
GCGCAAGATTAACGCCGAAATCGAGACGACATGACTATGAGGAACCACAG
CCCGATCTCTACACGTTAAATGGCGAAATTCGGGAAGGAATGTCATACGA
TGAGATCATGGAGATGGTTGCTCTGCAAGTCCTATCCGCTGATGGATGCC
TTGAGAAACTGAGAAATGAATCGAAAAACTGTCATAAAAGATGGAACGAT
TTGAAACCAACCCTCAGATACAGGTTTCCCGGATCTTATCAAAACTGGTA
TGTGAATGACATGTCTCTTGAACAACTTCTTCTGGATCGAGTGGGTGAGA
AAACCTATGGATTTCTCCGGCAATCAGATGCTTTTGACTCTACATATGCC
GCTTCTGCTTCATATGGGTTGGAAACATATGTCGAAGAGTTTACCGCTGA
ATCAGAGTACCGTACGGTTGAGGGTGGTCTCGGTGTAGTAATGAGCTTTC
TTGCCGATGAAATTAGAAATATGGGAGGTACTATCTACCTTGGTCACCAG
TTAACAAAATTTGTGAGGGCTAACCCCGCGATTGCGAAATATGAACTCAG
TCTACACGACAAATTGAAGAACTGCCATCACAAATTCTTTGCTAACAACC
TCATCCTGTGCATTCCAAAAAGGGGTCTCGAACAACTGAACCGTAATTCA
CATCTTTTCGAGACAGATAAGGCCAGAGGAGGAGCGTTCGAGAAAGCACT
ATACAGTGTTAGAGAAGTTCCAACATTAAAGCTGGTTCTTGGATTTGATC
AGCCTTGGTGGGAGAAGAGTATCGGTCGCTATGGAAAGACGGTGACTAAT
CTTCCCATCCGCCAAAGCTTTTACTTTGGTCACGGTAATGCAAATTCTTC
ACTAAGTACAGTTCTTGTAAGCTACACGGACATGGAAGGTTGTGCCTTTT
GGCAACATTTACAAAACAGAAAAGAAGATGAGAGTAACAACCGGCGTATC
GGAGGTAGTGATCTGCAGAAACTAGGGTATGAAAAAGCAAACCCTTTCGT
CGTCAACGAGGCTTTGACACAGCTGCAGAAAGTGCACGGTGAAAATATTA
CTATATCTCGTCCCGTAACCTCAGCGTTCATGGACTGGTCCAAAGACCCA
CATGGGGGAGGATATCATCACTGGAAGCCTGGTGCAAAAGGCTGGGAAGT
AGCTCCGTTCATGAGACGACCATTTGTTGATGAGAATATATTCATTGCAG
GAGAAGCGTTCTCAGACCGTCACTCGTGGATTGAAGGAGCATTTTGTTCA
GCGGAACTAGTTCTACGAGAGTGGTTTTTCCTAAAACCGCCAGAGTGGTT
GGAGGAAGAAGAGGAACAATACTATCTTGGTTGGTGA

protein sequence of Gcaud8073.t1

>Gcaud8073.t1 ID=Gcaud8073.t1|Name=Gcaud8073.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=579bp
MTCNGYQNCCDKAANPNFPTLGNMCGSDTQQVDVAIIGAGAAGLYCAYRL
LRDRNSDRSPPVSKIALFEAEQRVGGRVFSTFLTPNSKPVELGAMRYLSN
HKIIHSLVQNVIAKHSDKQSVDFGFRNAFHYTDGARLTPKSRRHDYEEPQ
PDLYTLNGEIREGMSYDEIMEMVALQVLSADGCLEKLRNESKNCHKRWND
LKPTLRYRFPGSYQNWYVNDMSLEQLLLDRVGEKTYGFLRQSDAFDSTYA
ASASYGLETYVEEFTAESEYRTVEGGLGVVMSFLADEIRNMGGTIYLGHQ
LTKFVRANPAIAKYELSLHDKLKNCHHKFFANNLILCIPKRGLEQLNRNS
HLFETDKARGGAFEKALYSVREVPTLKLVLGFDQPWWEKSIGRYGKTVTN
LPIRQSFYFGHGNANSSLSTVLVSYTDMEGCAFWQHLQNRKEDESNNRRI
GGSDLQKLGYEKANPFVVNEALTQLQKVHGENITISRPVTSAFMDWSKDP
HGGGYHHWKPGAKGWEVAPFMRRPFVDENIFIAGEAFSDRHSWIEGAFCS
AELVLREWFFLKPPEWLEEEEEQYYLGW*

mRNA from alignment at NODE_1189_length_12861_cov_4.838371:3260..4996+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8073.t1 ID=Gcaud8073.t1|Name=Gcaud8073.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1737bp|location=Sequence derived from alignment at NODE_1189_length_12861_cov_4.838371:3260..4996+ (Gracilaria caudata M_176_S67 male)
ATGACTTGCAACGGCTACCAAAACTGTTGTGATAAGGCTGCTAATCCGAA
CTTTCCTACCCTTGGTAATATGTGTGGCAGTGATACGCAGCAAGTGGATG
TCGCCATCATCGGCGCTGGTGCCGCAGGTCTATATTGCGCTTATCGCTTG
TTGAGGGACAGAAATTCTGATCGAAGTCCGCCAGTCTCCAAAATTGCTTT
GTTTGAAGCTGAACAGCGAGTTGGTGGTCGAGTTTTCTCCACGTTCTTGA
CCCCTAACTCTAAGCCTGTAGAACTGGGTGCCATGCGTTATTTATCTAAT
CACAAGATAATCCATTCTTTGGTGCAGAATGTTATTGCAAAACATTCAGA
TAAGCAGAGCGTAGATTTTGGCTTTCGAAATGCTTTTCACTATACAGACG
GCGCAAGATTAACGCCGAAATCGAGACGACATGACTATGAGGAACCACAG
CCCGATCTCTACACGTTAAATGGCGAAATTCGGGAAGGAATGTCATACGA
TGAGATCATGGAGATGGTTGCTCTGCAAGTCCTATCCGCTGATGGATGCC
TTGAGAAACTGAGAAATGAATCGAAAAACTGTCATAAAAGATGGAACGAT
TTGAAACCAACCCTCAGATACAGGTTTCCCGGATCTTATCAAAACTGGTA
TGTGAATGACATGTCTCTTGAACAACTTCTTCTGGATCGAGTGGGTGAGA
AAACCTATGGATTTCTCCGGCAATCAGATGCTTTTGACTCTACATATGCC
GCTTCTGCTTCATATGGGTTGGAAACATATGTCGAAGAGTTTACCGCTGA
ATCAGAGTACCGTACGGTTGAGGGTGGTCTCGGTGTAGTAATGAGCTTTC
TTGCCGATGAAATTAGAAATATGGGAGGTACTATCTACCTTGGTCACCAG
TTAACAAAATTTGTGAGGGCTAACCCCGCGATTGCGAAATATGAACTCAG
TCTACACGACAAATTGAAGAACTGCCATCACAAATTCTTTGCTAACAACC
TCATCCTGTGCATTCCAAAAAGGGGTCTCGAACAACTGAACCGTAATTCA
CATCTTTTCGAGACAGATAAGGCCAGAGGAGGAGCGTTCGAGAAAGCACT
ATACAGTGTTAGAGAAGTTCCAACATTAAAGCTGGTTCTTGGATTTGATC
AGCCTTGGTGGGAGAAGAGTATCGGTCGCTATGGAAAGACGGTGACTAAT
CTTCCCATCCGCCAAAGCTTTTACTTTGGTCACGGTAATGCAAATTCTTC
ACTAAGTACAGTTCTTGTAAGCTACACGGACATGGAAGGTTGTGCCTTTT
GGCAACATTTACAAAACAGAAAAGAAGATGAGAGTAACAACCGGCGTATC
GGAGGTAGTGATCTGCAGAAACTAGGGTATGAAAAAGCAAACCCTTTCGT
CGTCAACGAGGCTTTGACACAGCTGCAGAAAGTGCACGGTGAAAATATTA
CTATATCTCGTCCCGTAACCTCAGCGTTCATGGACTGGTCCAAAGACCCA
CATGGGGGAGGATATCATCACTGGAAGCCTGGTGCAAAAGGCTGGGAAGT
AGCTCCGTTCATGAGACGACCATTTGTTGATGAGAATATATTCATTGCAG
GAGAAGCGTTCTCAGACCGTCACTCGTGGATTGAAGGAGCATTTTGTTCA
GCGGAACTAGTTCTACGAGAGTGGTTTTTCCTAAAACCGCCAGAGTGGTT
GGAGGAAGAAGAGGAACAATACTATCTTGGTTGGTGA

Coding sequence (CDS) from alignment at NODE_1189_length_12861_cov_4.838371:3260..4996+

>Gcaud8073.t1 ID=Gcaud8073.t1|Name=Gcaud8073.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1737bp|location=Sequence derived from alignment at NODE_1189_length_12861_cov_4.838371:3260..4996+ (Gracilaria caudata M_176_S67 male)
ATGACTTGCAACGGCTACCAAAACTGTTGTGATAAGGCTGCTAATCCGAA
CTTTCCTACCCTTGGTAATATGTGTGGCAGTGATACGCAGCAAGTGGATG
TCGCCATCATCGGCGCTGGTGCCGCAGGTCTATATTGCGCTTATCGCTTG
TTGAGGGACAGAAATTCTGATCGAAGTCCGCCAGTCTCCAAAATTGCTTT
GTTTGAAGCTGAACAGCGAGTTGGTGGTCGAGTTTTCTCCACGTTCTTGA
CCCCTAACTCTAAGCCTGTAGAACTGGGTGCCATGCGTTATTTATCTAAT
CACAAGATAATCCATTCTTTGGTGCAGAATGTTATTGCAAAACATTCAGA
TAAGCAGAGCGTAGATTTTGGCTTTCGAAATGCTTTTCACTATACAGACG
GCGCAAGATTAACGCCGAAATCGAGACGACATGACTATGAGGAACCACAG
CCCGATCTCTACACGTTAAATGGCGAAATTCGGGAAGGAATGTCATACGA
TGAGATCATGGAGATGGTTGCTCTGCAAGTCCTATCCGCTGATGGATGCC
TTGAGAAACTGAGAAATGAATCGAAAAACTGTCATAAAAGATGGAACGAT
TTGAAACCAACCCTCAGATACAGGTTTCCCGGATCTTATCAAAACTGGTA
TGTGAATGACATGTCTCTTGAACAACTTCTTCTGGATCGAGTGGGTGAGA
AAACCTATGGATTTCTCCGGCAATCAGATGCTTTTGACTCTACATATGCC
GCTTCTGCTTCATATGGGTTGGAAACATATGTCGAAGAGTTTACCGCTGA
ATCAGAGTACCGTACGGTTGAGGGTGGTCTCGGTGTAGTAATGAGCTTTC
TTGCCGATGAAATTAGAAATATGGGAGGTACTATCTACCTTGGTCACCAG
TTAACAAAATTTGTGAGGGCTAACCCCGCGATTGCGAAATATGAACTCAG
TCTACACGACAAATTGAAGAACTGCCATCACAAATTCTTTGCTAACAACC
TCATCCTGTGCATTCCAAAAAGGGGTCTCGAACAACTGAACCGTAATTCA
CATCTTTTCGAGACAGATAAGGCCAGAGGAGGAGCGTTCGAGAAAGCACT
ATACAGTGTTAGAGAAGTTCCAACATTAAAGCTGGTTCTTGGATTTGATC
AGCCTTGGTGGGAGAAGAGTATCGGTCGCTATGGAAAGACGGTGACTAAT
CTTCCCATCCGCCAAAGCTTTTACTTTGGTCACGGTAATGCAAATTCTTC
ACTAAGTACAGTTCTTGTAAGCTACACGGACATGGAAGGTTGTGCCTTTT
GGCAACATTTACAAAACAGAAAAGAAGATGAGAGTAACAACCGGCGTATC
GGAGGTAGTGATCTGCAGAAACTAGGGTATGAAAAAGCAAACCCTTTCGT
CGTCAACGAGGCTTTGACACAGCTGCAGAAAGTGCACGGTGAAAATATTA
CTATATCTCGTCCCGTAACCTCAGCGTTCATGGACTGGTCCAAAGACCCA
CATGGGGGAGGATATCATCACTGGAAGCCTGGTGCAAAAGGCTGGGAAGT
AGCTCCGTTCATGAGACGACCATTTGTTGATGAGAATATATTCATTGCAG
GAGAAGCGTTCTCAGACCGTCACTCGTGGATTGAAGGAGCATTTTGTTCA
GCGGAACTAGTTCTACGAGAGTGGTTTTTCCTAAAACCGCCAGAGTGGTT
GGAGGAAGAAGAGGAACAATACTATCTTGGTTGGTGA