Gcaud8055.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8055.t1
Unique NameGcaud8055.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2348_length_6006_cov_5.227388contigNODE_2348_length_6006_cov_5.227388:3432..3986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog126957.SMAR006634-PA
PFAMsDUF3421
Max annot lvl33154|Opisthokonta
Evalue6.07e-25
EggNOG OGs28P3B@1|root,2QVPV@2759|Eukaryota,39W1J@33154|Opisthokonta
DescriptionProtein of unknown function (DUF3421)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8055Gcaud8055Gracilaria caudata M_176_S67 malegeneNODE_2348_length_6006_cov_5.227388 3432..3986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8055.t1Gcaud8055.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2348_length_6006_cov_5.227388 3432..3986 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8055.t1.start1Gcaud8055.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2348_length_6006_cov_5.227388 3432..3434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8055.t1.CDS1Gcaud8055.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2348_length_6006_cov_5.227388 3432..3868 +
Gcaud8055.t1.CDS2Gcaud8055.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2348_length_6006_cov_5.227388 3965..3986 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8055.t1.exon1Gcaud8055.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2348_length_6006_cov_5.227388 3432..3868 +
Gcaud8055.t1.exon2Gcaud8055.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2348_length_6006_cov_5.227388 3965..3986 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8055.t1.intron1Gcaud8055.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2348_length_6006_cov_5.227388 3869..3964 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8055.t1.stop1Gcaud8055.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2348_length_6006_cov_5.227388 3984..3986 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8055.t1 ID=Gcaud8055.t1|Name=Gcaud8055.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=153bp
MASLKWVTYSGGEPPANLVEGGHRGNGSKTYVARGAIGGEMSIGKFHDRT
SYIPWNGKEHNLSPCELLVCDKPDQLLWLSASKGEVPNGAIDGGHRQDGL
PFYVGHAVHGSETLAGKVFPLDKCIYVGTGWKVYRKEEYEVLVAKSYWQV
VF*
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spliced messenger RNA

>Gcaud8055.t1 ID=Gcaud8055.t1|Name=Gcaud8055.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=459bp|location=Sequence derived from alignment at NODE_2348_length_6006_cov_5.227388:3432..3986+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTCTGAAATGGGTAACCTACTCCGGCGGCGAACCACCGGCTAA
TCTCGTGGAAGGCGGCCACCGAGGGAACGGCAGCAAGACGTACGTCGCGC
GCGGAGCTATCGGGGGCGAGATGTCGATTGGCAAGTTCCACGATAGAACA
TCATATATCCCCTGGAATGGTAAAGAGCACAACTTGTCACCTTGCGAGCT
GCTCGTTTGCGACAAGCCGGATCAGCTTTTGTGGTTGTCGGCAAGCAAAG
GAGAGGTGCCGAATGGAGCGATTGACGGCGGCCATCGCCAAGATGGACTC
CCGTTCTATGTCGGCCATGCTGTCCATGGTTCAGAGACTCTTGCCGGGAA
AGTTTTCCCGTTAGATAAGTGCATTTATGTTGGAACTGGATGGAAGGTCT
ATCGCAAAGAGGAGTACGAGGTTTTGGTTGCGAAGTCTTATTGGCAAGTT
GTCTTCTGA
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protein sequence of Gcaud8055.t1

>Gcaud8055.t1 ID=Gcaud8055.t1|Name=Gcaud8055.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=153bp
MASLKWVTYSGGEPPANLVEGGHRGNGSKTYVARGAIGGEMSIGKFHDRT
SYIPWNGKEHNLSPCELLVCDKPDQLLWLSASKGEVPNGAIDGGHRQDGL
PFYVGHAVHGSETLAGKVFPLDKCIYVGTGWKVYRKEEYEVLVAKSYWQV
VF*
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mRNA from alignment at NODE_2348_length_6006_cov_5.227388:3432..3986+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8055.t1 ID=Gcaud8055.t1|Name=Gcaud8055.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp|location=Sequence derived from alignment at NODE_2348_length_6006_cov_5.227388:3432..3986+ (Gracilaria caudata M_176_S67 male)
ATGGCCTCTCTGAAATGGGTAACCTACTCCGGCGGCGAACCACCGGCTAA
TCTCGTGGAAGGCGGCCACCGAGGGAACGGCAGCAAGACGTACGTCGCGC
GCGGAGCTATCGGGGGCGAGATGTCGATTGGCAAGTTCCACGATAGAACA
TCATATATCCCCTGGAATGGTAAAGAGCACAACTTGTCACCTTGCGAGCT
GCTCGTTTGCGACAAGCCGGATCAGCTTTTGTGGTTGTCGGCAAGCAAAG
GAGAGGTGCCGAATGGAGCGATTGACGGCGGCCATCGCCAAGATGGACTC
CCGTTCTATGTCGGCCATGCTGTCCATGGTTCAGAGACTCTTGCCGGGAA
AGTTTTCCCGTTAGATAAGTGCATTTATGTTGGAACTGGATGGAAGGTCT
ATCGCAAAGAGGAGTACGAGGTTTTGGTTGCGAAGTCGTACGTGTTGCCC
ACCGAGGACTAAAGTTTGCAGTCTGGCGTGTTTGAAGTTATGTTTCAGAG
TTTTAACCGTGCCGTTGCTATCCTGCAATCAAGTTATTGGCAAGTTGTCT
TCTGA
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Coding sequence (CDS) from alignment at NODE_2348_length_6006_cov_5.227388:3432..3986+

>Gcaud8055.t1 ID=Gcaud8055.t1|Name=Gcaud8055.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=459bp|location=Sequence derived from alignment at NODE_2348_length_6006_cov_5.227388:3432..3986+ (Gracilaria caudata M_176_S67 male)
ATGGCCTCTCTGAAATGGGTAACCTACTCCGGCGGCGAACCACCGGCTAA
TCTCGTGGAAGGCGGCCACCGAGGGAACGGCAGCAAGACGTACGTCGCGC
GCGGAGCTATCGGGGGCGAGATGTCGATTGGCAAGTTCCACGATAGAACA
TCATATATCCCCTGGAATGGTAAAGAGCACAACTTGTCACCTTGCGAGCT
GCTCGTTTGCGACAAGCCGGATCAGCTTTTGTGGTTGTCGGCAAGCAAAG
GAGAGGTGCCGAATGGAGCGATTGACGGCGGCCATCGCCAAGATGGACTC
CCGTTCTATGTCGGCCATGCTGTCCATGGTTCAGAGACTCTTGCCGGGAA
AGTTTTCCCGTTAGATAAGTGCATTTATGTTGGAACTGGATGGAAGGTCT
ATCGCAAAGAGGAGTACGAGGTTTTGGTTGCGAAGTCTTATTGGCAAGTT
GTCTTCTGA
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