Gcaud8041.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8041.t1
Unique Name	Gcaud8041.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	238

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_612_length_20883_cov_4.409052	contig	NODE_612_length_20883_cov_4.409052:15870..16583 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8041	Gcaud8041	Gracilaria caudata M_176_S67 male	gene	NODE_612_length_20883_cov_4.409052 15870..16583 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8041.t1.start1	Gcaud8041.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_612_length_20883_cov_4.409052 15870..15872 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8041.t1.CDS1	Gcaud8041.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_612_length_20883_cov_4.409052 15870..16583 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8041.t1.exon1	Gcaud8041.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_612_length_20883_cov_4.409052 15870..16583 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8041.t1.stop1	Gcaud8041.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_612_length_20883_cov_4.409052 16581..16583 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8041.t1	Gcaud8041.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_612_length_20883_cov_4.409052 15870..16583 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_612_length_20883_cov_4.409052:15870..16583+
coding sequence from alignment at NODE_612_length_20883_cov_4.409052:15870..16583+

mRNA sequence

>Gcaud8041.t1 ID=Gcaud8041.t1|Name=Gcaud8041.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=238bp
MSLLASEPEQSAHIRLSAKQVERLLDCVQDNPCRPALVKEIRRNVRVIHP
ADLPVKPLEESEIKRLAEATIRAQAMVAKLNAVREAHTDLLRREIERTHQ
QATHLPSVSAQQFEPTSHLQSLAGQVNVEIKSTVDFIQKLAAASEDTKKR
VQNVTNALEIAKSDGNVADHSIIADWTGTFTDIVDQDVEFPIPTKPTEEV
ESYPDDPFVTPRSKMRKRAAMLSKMSPRHRSISKLPR*

spliced messenger RNA

>Gcaud8041.t1 ID=Gcaud8041.t1|Name=Gcaud8041.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=714bp|location=Sequence derived from alignment at NODE_612_length_20883_cov_4.409052:15870..16583+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTGCTTGCGTCCGAGCCCGAGCAGTCTGCTCACATCCGTCTCAG
TGCAAAGCAGGTCGAAAGATTGCTAGACTGCGTGCAAGACAACCCCTGCA
GACCGGCGCTCGTGAAGGAAATACGTCGCAACGTACGCGTTATTCACCCC
GCTGATCTCCCTGTCAAACCACTGGAAGAATCCGAAATCAAGCGTCTAGC
TGAGGCCACCATACGCGCACAGGCCATGGTTGCGAAGCTGAACGCCGTGC
GAGAGGCGCACACTGACTTGCTTCGGCGAGAGATTGAACGCACCCACCAG
CAAGCTACGCATCTCCCGTCGGTTTCCGCACAGCAATTTGAACCAACTTC
TCATCTACAATCGCTGGCGGGTCAAGTCAATGTGGAGATCAAAAGCACAG
TCGACTTTATTCAAAAGCTGGCCGCAGCAAGTGAAGACACCAAAAAGAGA
GTGCAAAACGTTACTAACGCGTTGGAGATCGCCAAGAGTGACGGAAATGT
CGCGGACCACAGCATCATAGCGGATTGGACAGGTACGTTCACGGACATCG
TGGATCAGGATGTAGAGTTTCCCATCCCAACAAAGCCAACGGAGGAGGTT
GAAAGCTACCCCGACGACCCTTTTGTCACACCTAGGTCCAAAATGAGGAA
AAGGGCAGCCATGCTGTCGAAAATGAGTCCAAGGCATAGATCCATATCCA
AACTGCCCAGATAA

protein sequence of Gcaud8041.t1

>Gcaud8041.t1 ID=Gcaud8041.t1|Name=Gcaud8041.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=238bp
MSLLASEPEQSAHIRLSAKQVERLLDCVQDNPCRPALVKEIRRNVRVIHP
ADLPVKPLEESEIKRLAEATIRAQAMVAKLNAVREAHTDLLRREIERTHQ
QATHLPSVSAQQFEPTSHLQSLAGQVNVEIKSTVDFIQKLAAASEDTKKR
VQNVTNALEIAKSDGNVADHSIIADWTGTFTDIVDQDVEFPIPTKPTEEV
ESYPDDPFVTPRSKMRKRAAMLSKMSPRHRSISKLPR*

mRNA from alignment at NODE_612_length_20883_cov_4.409052:15870..16583+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8041.t1 ID=Gcaud8041.t1|Name=Gcaud8041.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=714bp|location=Sequence derived from alignment at NODE_612_length_20883_cov_4.409052:15870..16583+ (Gracilaria caudata M_176_S67 male)
ATGTCCTTGCTTGCGTCCGAGCCCGAGCAGTCTGCTCACATCCGTCTCAG
TGCAAAGCAGGTCGAAAGATTGCTAGACTGCGTGCAAGACAACCCCTGCA
GACCGGCGCTCGTGAAGGAAATACGTCGCAACGTACGCGTTATTCACCCC
GCTGATCTCCCTGTCAAACCACTGGAAGAATCCGAAATCAAGCGTCTAGC
TGAGGCCACCATACGCGCACAGGCCATGGTTGCGAAGCTGAACGCCGTGC
GAGAGGCGCACACTGACTTGCTTCGGCGAGAGATTGAACGCACCCACCAG
CAAGCTACGCATCTCCCGTCGGTTTCCGCACAGCAATTTGAACCAACTTC
TCATCTACAATCGCTGGCGGGTCAAGTCAATGTGGAGATCAAAAGCACAG
TCGACTTTATTCAAAAGCTGGCCGCAGCAAGTGAAGACACCAAAAAGAGA
GTGCAAAACGTTACTAACGCGTTGGAGATCGCCAAGAGTGACGGAAATGT
CGCGGACCACAGCATCATAGCGGATTGGACAGGTACGTTCACGGACATCG
TGGATCAGGATGTAGAGTTTCCCATCCCAACAAAGCCAACGGAGGAGGTT
GAAAGCTACCCCGACGACCCTTTTGTCACACCTAGGTCCAAAATGAGGAA
AAGGGCAGCCATGCTGTCGAAAATGAGTCCAAGGCATAGATCCATATCCA
AACTGCCCAGATAA

Coding sequence (CDS) from alignment at NODE_612_length_20883_cov_4.409052:15870..16583+

>Gcaud8041.t1 ID=Gcaud8041.t1|Name=Gcaud8041.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=714bp|location=Sequence derived from alignment at NODE_612_length_20883_cov_4.409052:15870..16583+ (Gracilaria caudata M_176_S67 male)
ATGTCCTTGCTTGCGTCCGAGCCCGAGCAGTCTGCTCACATCCGTCTCAG
TGCAAAGCAGGTCGAAAGATTGCTAGACTGCGTGCAAGACAACCCCTGCA
GACCGGCGCTCGTGAAGGAAATACGTCGCAACGTACGCGTTATTCACCCC
GCTGATCTCCCTGTCAAACCACTGGAAGAATCCGAAATCAAGCGTCTAGC
TGAGGCCACCATACGCGCACAGGCCATGGTTGCGAAGCTGAACGCCGTGC
GAGAGGCGCACACTGACTTGCTTCGGCGAGAGATTGAACGCACCCACCAG
CAAGCTACGCATCTCCCGTCGGTTTCCGCACAGCAATTTGAACCAACTTC
TCATCTACAATCGCTGGCGGGTCAAGTCAATGTGGAGATCAAAAGCACAG
TCGACTTTATTCAAAAGCTGGCCGCAGCAAGTGAAGACACCAAAAAGAGA
GTGCAAAACGTTACTAACGCGTTGGAGATCGCCAAGAGTGACGGAAATGT
CGCGGACCACAGCATCATAGCGGATTGGACAGGTACGTTCACGGACATCG
TGGATCAGGATGTAGAGTTTCCCATCCCAACAAAGCCAACGGAGGAGGTT
GAAAGCTACCCCGACGACCCTTTTGTCACACCTAGGTCCAAAATGAGGAA
AAGGGCAGCCATGCTGTCGAAAATGAGTCCAAGGCATAGATCCATATCCA
AACTGCCCAGATAA