Gcaud8040.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8040.t1
Unique Name	Gcaud8040.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	412

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_612_length_20883_cov_4.409052	contig	NODE_612_length_20883_cov_4.409052:14141..15376 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708412.1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07298
KEGG Pathway	ko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04530,ko04920,map04068,map04140,map04150,map04151,map04152,map04211,map04530,map04920
Evalue	2.76e-95
EggNOG OGs	KOG0583@1\|root,KOG0583@2759\|Eukaryota
EC	2.7.11.1
Description	protein serine/threonine kinase activity
COG category	G
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8040	Gcaud8040	Gracilaria caudata M_176_S67 male	gene	NODE_612_length_20883_cov_4.409052 14141..15376 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8040.t1.stop1	Gcaud8040.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_612_length_20883_cov_4.409052 14141..14143 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8040.t1.CDS1	Gcaud8040.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_612_length_20883_cov_4.409052 14141..15376 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8040.t1.exon1	Gcaud8040.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_612_length_20883_cov_4.409052 14141..15376 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8040.t1.start1	Gcaud8040.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_612_length_20883_cov_4.409052 15374..15376 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8040.t1	Gcaud8040.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_612_length_20883_cov_4.409052 14141..15376 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_612_length_20883_cov_4.409052:14141..15376-
coding sequence from alignment at NODE_612_length_20883_cov_4.409052:14141..15376-

mRNA sequence

>Gcaud8040.t1 ID=Gcaud8040.t1|Name=Gcaud8040.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=412bp
MSSLWSRSSDDPAEFLFPRRTAPEPHGAALAQQSFPFSFDSSSSDDDFPS
APRRPKFIQGTKSSFLLGEKLGEGAFAVVKEGIDQNSLRLVAIKVLDMRR
IRKMRGGADAVLREVRVQKRLRRHPNLIELIDVIRPEQSSKTYIVLELAN
GCTVAELAERNGGTLPHTQVANYAYQVLRGLHYMHGKGVVHRDIKPANMM
MTTNGTLKISDFGVAEFLDGYTQDDSVSRTSGSPAFQAPEIARGDEDYSG
TKVDVWALGISIFLLVTGRIPFHGDNLMQLFENIGTGVFEMPQDLPEDLK
DVLAKMLTIDWRERQSVFELLRHPWIVKGSLVLSDAQKEELGWAKIPAVS
VSILDAVKQLYGNDEDVVQTSNLTDEPPPPQQPSPREAPPPMRDEPRTML
RAFSTISCCIC*

spliced messenger RNA

>Gcaud8040.t1 ID=Gcaud8040.t1|Name=Gcaud8040.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at NODE_612_length_20883_cov_4.409052:14141..15376- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCTCTCTGGTCGCGCTCCAGTGACGACCCCGCTGAGTTTCTTTT
TCCAAGGCGCACTGCCCCCGAGCCCCACGGGGCTGCACTTGCCCAACAAT
CCTTCCCGTTCTCGTTCGATAGCTCCTCCTCAGACGATGACTTTCCTAGT
GCTCCGCGAAGACCAAAGTTCATACAGGGCACCAAGAGTTCGTTTCTTCT
TGGCGAAAAGCTTGGCGAGGGCGCTTTCGCAGTCGTCAAAGAAGGGATAG
ACCAGAACTCGTTACGTCTAGTCGCTATCAAAGTTTTGGACATGAGGCGA
ATCAGGAAGATGAGGGGCGGTGCCGACGCGGTACTAAGAGAAGTTCGTGT
TCAGAAGAGGTTAAGGCGACATCCCAATCTCATTGAACTCATCGATGTAA
TTCGTCCAGAGCAGTCATCCAAGACATACATTGTTCTTGAGCTTGCGAAT
GGCTGTACAGTTGCAGAGTTAGCAGAGCGAAATGGCGGCACCTTGCCACA
CACTCAGGTAGCAAACTATGCGTACCAAGTTCTCAGAGGCTTGCACTATA
TGCATGGTAAGGGTGTTGTACATAGAGACATAAAGCCTGCCAACATGATG
ATGACTACCAACGGCACCCTGAAGATATCAGATTTTGGTGTAGCCGAGTT
TCTTGATGGATACACTCAGGATGACAGCGTTAGCAGAACTTCTGGTAGCC
CAGCCTTTCAAGCGCCAGAAATCGCCAGAGGAGACGAAGATTATTCTGGT
ACGAAGGTCGATGTGTGGGCCTTAGGGATTTCCATTTTCTTGCTCGTCAC
AGGTCGCATTCCATTCCACGGCGATAATCTCATGCAGCTCTTTGAAAACA
TAGGAACAGGCGTCTTCGAAATGCCACAGGATCTACCAGAAGACCTCAAA
GATGTGTTAGCGAAAATGTTGACCATCGATTGGAGGGAGAGACAGAGTGT
CTTCGAATTACTTCGACATCCTTGGATTGTGAAAGGTAGTCTTGTGCTAT
CCGACGCACAGAAGGAAGAATTAGGCTGGGCGAAGATTCCCGCAGTAAGC
GTTAGCATCCTGGACGCTGTGAAACAGTTGTACGGCAATGACGAAGATGT
GGTTCAGACATCCAATTTAACTGATGAACCACCTCCCCCACAACAACCTT
CCCCACGTGAGGCACCACCTCCAATGCGAGATGAACCTCGAACCATGCTA
CGAGCGTTTTCCACTATTTCGTGTTGTATTTGCTAG

protein sequence of Gcaud8040.t1

>Gcaud8040.t1 ID=Gcaud8040.t1|Name=Gcaud8040.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=412bp
MSSLWSRSSDDPAEFLFPRRTAPEPHGAALAQQSFPFSFDSSSSDDDFPS
APRRPKFIQGTKSSFLLGEKLGEGAFAVVKEGIDQNSLRLVAIKVLDMRR
IRKMRGGADAVLREVRVQKRLRRHPNLIELIDVIRPEQSSKTYIVLELAN
GCTVAELAERNGGTLPHTQVANYAYQVLRGLHYMHGKGVVHRDIKPANMM
MTTNGTLKISDFGVAEFLDGYTQDDSVSRTSGSPAFQAPEIARGDEDYSG
TKVDVWALGISIFLLVTGRIPFHGDNLMQLFENIGTGVFEMPQDLPEDLK
DVLAKMLTIDWRERQSVFELLRHPWIVKGSLVLSDAQKEELGWAKIPAVS
VSILDAVKQLYGNDEDVVQTSNLTDEPPPPQQPSPREAPPPMRDEPRTML
RAFSTISCCIC*

mRNA from alignment at NODE_612_length_20883_cov_4.409052:14141..15376-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8040.t1 ID=Gcaud8040.t1|Name=Gcaud8040.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at NODE_612_length_20883_cov_4.409052:14141..15376- (Gracilaria caudata M_176_S67 male)
ATGAGTTCTCTCTGGTCGCGCTCCAGTGACGACCCCGCTGAGTTTCTTTT
TCCAAGGCGCACTGCCCCCGAGCCCCACGGGGCTGCACTTGCCCAACAAT
CCTTCCCGTTCTCGTTCGATAGCTCCTCCTCAGACGATGACTTTCCTAGT
GCTCCGCGAAGACCAAAGTTCATACAGGGCACCAAGAGTTCGTTTCTTCT
TGGCGAAAAGCTTGGCGAGGGCGCTTTCGCAGTCGTCAAAGAAGGGATAG
ACCAGAACTCGTTACGTCTAGTCGCTATCAAAGTTTTGGACATGAGGCGA
ATCAGGAAGATGAGGGGCGGTGCCGACGCGGTACTAAGAGAAGTTCGTGT
TCAGAAGAGGTTAAGGCGACATCCCAATCTCATTGAACTCATCGATGTAA
TTCGTCCAGAGCAGTCATCCAAGACATACATTGTTCTTGAGCTTGCGAAT
GGCTGTACAGTTGCAGAGTTAGCAGAGCGAAATGGCGGCACCTTGCCACA
CACTCAGGTAGCAAACTATGCGTACCAAGTTCTCAGAGGCTTGCACTATA
TGCATGGTAAGGGTGTTGTACATAGAGACATAAAGCCTGCCAACATGATG
ATGACTACCAACGGCACCCTGAAGATATCAGATTTTGGTGTAGCCGAGTT
TCTTGATGGATACACTCAGGATGACAGCGTTAGCAGAACTTCTGGTAGCC
CAGCCTTTCAAGCGCCAGAAATCGCCAGAGGAGACGAAGATTATTCTGGT
ACGAAGGTCGATGTGTGGGCCTTAGGGATTTCCATTTTCTTGCTCGTCAC
AGGTCGCATTCCATTCCACGGCGATAATCTCATGCAGCTCTTTGAAAACA
TAGGAACAGGCGTCTTCGAAATGCCACAGGATCTACCAGAAGACCTCAAA
GATGTGTTAGCGAAAATGTTGACCATCGATTGGAGGGAGAGACAGAGTGT
CTTCGAATTACTTCGACATCCTTGGATTGTGAAAGGTAGTCTTGTGCTAT
CCGACGCACAGAAGGAAGAATTAGGCTGGGCGAAGATTCCCGCAGTAAGC
GTTAGCATCCTGGACGCTGTGAAACAGTTGTACGGCAATGACGAAGATGT
GGTTCAGACATCCAATTTAACTGATGAACCACCTCCCCCACAACAACCTT
CCCCACGTGAGGCACCACCTCCAATGCGAGATGAACCTCGAACCATGCTA
CGAGCGTTTTCCACTATTTCGTGTTGTATTTGCTAG

Coding sequence (CDS) from alignment at NODE_612_length_20883_cov_4.409052:14141..15376-

>Gcaud8040.t1 ID=Gcaud8040.t1|Name=Gcaud8040.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1236bp|location=Sequence derived from alignment at NODE_612_length_20883_cov_4.409052:14141..15376- (Gracilaria caudata M_176_S67 male)
ATGAGTTCTCTCTGGTCGCGCTCCAGTGACGACCCCGCTGAGTTTCTTTT
TCCAAGGCGCACTGCCCCCGAGCCCCACGGGGCTGCACTTGCCCAACAAT
CCTTCCCGTTCTCGTTCGATAGCTCCTCCTCAGACGATGACTTTCCTAGT
GCTCCGCGAAGACCAAAGTTCATACAGGGCACCAAGAGTTCGTTTCTTCT
TGGCGAAAAGCTTGGCGAGGGCGCTTTCGCAGTCGTCAAAGAAGGGATAG
ACCAGAACTCGTTACGTCTAGTCGCTATCAAAGTTTTGGACATGAGGCGA
ATCAGGAAGATGAGGGGCGGTGCCGACGCGGTACTAAGAGAAGTTCGTGT
TCAGAAGAGGTTAAGGCGACATCCCAATCTCATTGAACTCATCGATGTAA
TTCGTCCAGAGCAGTCATCCAAGACATACATTGTTCTTGAGCTTGCGAAT
GGCTGTACAGTTGCAGAGTTAGCAGAGCGAAATGGCGGCACCTTGCCACA
CACTCAGGTAGCAAACTATGCGTACCAAGTTCTCAGAGGCTTGCACTATA
TGCATGGTAAGGGTGTTGTACATAGAGACATAAAGCCTGCCAACATGATG
ATGACTACCAACGGCACCCTGAAGATATCAGATTTTGGTGTAGCCGAGTT
TCTTGATGGATACACTCAGGATGACAGCGTTAGCAGAACTTCTGGTAGCC
CAGCCTTTCAAGCGCCAGAAATCGCCAGAGGAGACGAAGATTATTCTGGT
ACGAAGGTCGATGTGTGGGCCTTAGGGATTTCCATTTTCTTGCTCGTCAC
AGGTCGCATTCCATTCCACGGCGATAATCTCATGCAGCTCTTTGAAAACA
TAGGAACAGGCGTCTTCGAAATGCCACAGGATCTACCAGAAGACCTCAAA
GATGTGTTAGCGAAAATGTTGACCATCGATTGGAGGGAGAGACAGAGTGT
CTTCGAATTACTTCGACATCCTTGGATTGTGAAAGGTAGTCTTGTGCTAT
CCGACGCACAGAAGGAAGAATTAGGCTGGGCGAAGATTCCCGCAGTAAGC
GTTAGCATCCTGGACGCTGTGAAACAGTTGTACGGCAATGACGAAGATGT
GGTTCAGACATCCAATTTAACTGATGAACCACCTCCCCCACAACAACCTT
CCCCACGTGAGGCACCACCTCCAATGCGAGATGAACCTCGAACCATGCTA
CGAGCGTTTTCCACTATTTCGTGTTGTATTTGCTAG