Gcaud803.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud803.t1
Unique NameGcaud803.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_563_length_21865_cov_4.553550contigNODE_563_length_21865_cov_4.553550:6719..7471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud803Gcaud803Gracilaria caudata M_176_S67 malegeneNODE_563_length_21865_cov_4.553550 6719..7471 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud803.t1.start1Gcaud803.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_563_length_21865_cov_4.553550 6719..6721 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud803.t1.CDS1Gcaud803.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_563_length_21865_cov_4.553550 6719..7471 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud803.t1.exon1Gcaud803.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_563_length_21865_cov_4.553550 6719..7471 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud803.t1.stop1Gcaud803.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_563_length_21865_cov_4.553550 7469..7471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud803.t1Gcaud803.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_563_length_21865_cov_4.553550 6719..7471 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud803.t1 ID=Gcaud803.t1|Name=Gcaud803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=251bp
MGQIREAKEICSNRCRQQVITCLLLKHQFRIAIKDAFLTDSPSSTHSSLP
SYPQPRGFFPLIPLQIDPTPQPLDMHAIIQISLLATLLIGAAHASGPLPR
DACAEAFAECAFRFQGSTELQSFPLGVPDMAFTPQIVSRTRGERIGIVNS
NGIEPQFIASDGTARDITDFGNGFTPTQFKPFAIEERIGSGIGHETFQGD
PSLAEGQCVRVFFTSYQKLVSVNPPVVVDNINLTPEEAVMMKACVVFLTE
*
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spliced messenger RNA

>Gcaud803.t1 ID=Gcaud803.t1|Name=Gcaud803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=753bp|location=Sequence derived from alignment at NODE_563_length_21865_cov_4.553550:6719..7471+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACAAATCAGGGAAGCAAAAGAAATCTGTTCCAACAGATGTAGACA
ACAGGTCATCACCTGCTTGTTGTTGAAACACCAGTTCAGAATCGCTATAA
AAGACGCCTTTCTCACCGACTCCCCGTCGTCGACTCACTCTTCTTTGCCA
TCGTACCCTCAACCTCGCGGCTTCTTCCCACTCATTCCATTACAAATCGA
TCCCACACCTCAGCCACTCGATATGCACGCTATCATTCAAATCAGCTTGC
TTGCCACGCTGCTCATCGGTGCAGCTCATGCCAGTGGTCCGCTTCCGAGG
GATGCGTGCGCCGAAGCCTTTGCCGAATGTGCCTTCCGCTTCCAGGGTTC
CACCGAGCTTCAGTCGTTCCCGCTTGGAGTACCCGACATGGCTTTCACGC
CGCAAATCGTGTCCCGTACCCGTGGCGAACGCATCGGTATCGTGAACTCC
AATGGTATTGAACCGCAGTTCATTGCCTCTGATGGCACTGCGCGCGACAT
CACGGATTTCGGAAACGGGTTCACGCCGACGCAGTTCAAGCCGTTTGCTA
TAGAAGAACGTATTGGATCTGGAATTGGACACGAGACGTTCCAGGGCGAT
CCGTCGTTGGCGGAGGGACAGTGTGTGCGCGTGTTCTTCACTTCGTATCA
GAAACTTGTTAGTGTTAATCCGCCGGTGGTGGTGGACAACATTAATCTTA
CCCCGGAAGAGGCTGTGATGATGAAAGCCTGTGTGGTGTTCCTTACGGAA
TAG
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protein sequence of Gcaud803.t1

>Gcaud803.t1 ID=Gcaud803.t1|Name=Gcaud803.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=251bp
MGQIREAKEICSNRCRQQVITCLLLKHQFRIAIKDAFLTDSPSSTHSSLP
SYPQPRGFFPLIPLQIDPTPQPLDMHAIIQISLLATLLIGAAHASGPLPR
DACAEAFAECAFRFQGSTELQSFPLGVPDMAFTPQIVSRTRGERIGIVNS
NGIEPQFIASDGTARDITDFGNGFTPTQFKPFAIEERIGSGIGHETFQGD
PSLAEGQCVRVFFTSYQKLVSVNPPVVVDNINLTPEEAVMMKACVVFLTE
*
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mRNA from alignment at NODE_563_length_21865_cov_4.553550:6719..7471+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud803.t1 ID=Gcaud803.t1|Name=Gcaud803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=753bp|location=Sequence derived from alignment at NODE_563_length_21865_cov_4.553550:6719..7471+ (Gracilaria caudata M_176_S67 male)
ATGGGACAAATCAGGGAAGCAAAAGAAATCTGTTCCAACAGATGTAGACA
ACAGGTCATCACCTGCTTGTTGTTGAAACACCAGTTCAGAATCGCTATAA
AAGACGCCTTTCTCACCGACTCCCCGTCGTCGACTCACTCTTCTTTGCCA
TCGTACCCTCAACCTCGCGGCTTCTTCCCACTCATTCCATTACAAATCGA
TCCCACACCTCAGCCACTCGATATGCACGCTATCATTCAAATCAGCTTGC
TTGCCACGCTGCTCATCGGTGCAGCTCATGCCAGTGGTCCGCTTCCGAGG
GATGCGTGCGCCGAAGCCTTTGCCGAATGTGCCTTCCGCTTCCAGGGTTC
CACCGAGCTTCAGTCGTTCCCGCTTGGAGTACCCGACATGGCTTTCACGC
CGCAAATCGTGTCCCGTACCCGTGGCGAACGCATCGGTATCGTGAACTCC
AATGGTATTGAACCGCAGTTCATTGCCTCTGATGGCACTGCGCGCGACAT
CACGGATTTCGGAAACGGGTTCACGCCGACGCAGTTCAAGCCGTTTGCTA
TAGAAGAACGTATTGGATCTGGAATTGGACACGAGACGTTCCAGGGCGAT
CCGTCGTTGGCGGAGGGACAGTGTGTGCGCGTGTTCTTCACTTCGTATCA
GAAACTTGTTAGTGTTAATCCGCCGGTGGTGGTGGACAACATTAATCTTA
CCCCGGAAGAGGCTGTGATGATGAAAGCCTGTGTGGTGTTCCTTACGGAA
TAG
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Coding sequence (CDS) from alignment at NODE_563_length_21865_cov_4.553550:6719..7471+

>Gcaud803.t1 ID=Gcaud803.t1|Name=Gcaud803.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=753bp|location=Sequence derived from alignment at NODE_563_length_21865_cov_4.553550:6719..7471+ (Gracilaria caudata M_176_S67 male)
ATGGGACAAATCAGGGAAGCAAAAGAAATCTGTTCCAACAGATGTAGACA
ACAGGTCATCACCTGCTTGTTGTTGAAACACCAGTTCAGAATCGCTATAA
AAGACGCCTTTCTCACCGACTCCCCGTCGTCGACTCACTCTTCTTTGCCA
TCGTACCCTCAACCTCGCGGCTTCTTCCCACTCATTCCATTACAAATCGA
TCCCACACCTCAGCCACTCGATATGCACGCTATCATTCAAATCAGCTTGC
TTGCCACGCTGCTCATCGGTGCAGCTCATGCCAGTGGTCCGCTTCCGAGG
GATGCGTGCGCCGAAGCCTTTGCCGAATGTGCCTTCCGCTTCCAGGGTTC
CACCGAGCTTCAGTCGTTCCCGCTTGGAGTACCCGACATGGCTTTCACGC
CGCAAATCGTGTCCCGTACCCGTGGCGAACGCATCGGTATCGTGAACTCC
AATGGTATTGAACCGCAGTTCATTGCCTCTGATGGCACTGCGCGCGACAT
CACGGATTTCGGAAACGGGTTCACGCCGACGCAGTTCAAGCCGTTTGCTA
TAGAAGAACGTATTGGATCTGGAATTGGACACGAGACGTTCCAGGGCGAT
CCGTCGTTGGCGGAGGGACAGTGTGTGCGCGTGTTCTTCACTTCGTATCA
GAAACTTGTTAGTGTTAATCCGCCGGTGGTGGTGGACAACATTAATCTTA
CCCCGGAAGAGGCTGTGATGATGAAAGCCTGTGTGGTGTTCCTTACGGAA
TAG
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