Gcaud8029.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8029.t1
Unique Name	Gcaud8029.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	322

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_47_length_66049_cov_4.331180	contig	NODE_47_length_66049_cov_4.331180:55322..56287 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4792.ETI37965
PFAMs	Peptidase_C12
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K05610
Evalue	4.14e-87
EggNOG OGs	KOG2778@1\|root,KOG2778@2759\|Eukaryota,3QA2M@4776\|Peronosporales
EC	3.4.19.12
Description	Ubiquitin carboxyl-terminal hydrolase, family 1
COG category	O
BRITE	ko00000,ko01000,ko01002,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8029	Gcaud8029	Gracilaria caudata M_176_S67 male	gene	NODE_47_length_66049_cov_4.331180 55322..56287 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8029.t1.start1	Gcaud8029.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_47_length_66049_cov_4.331180 55322..55324 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8029.t1.CDS1	Gcaud8029.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_47_length_66049_cov_4.331180 55322..56287 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8029.t1.exon1	Gcaud8029.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_47_length_66049_cov_4.331180 55322..56287 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8029.t1.stop1	Gcaud8029.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_47_length_66049_cov_4.331180 56285..56287 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8029.t1	Gcaud8029.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_47_length_66049_cov_4.331180 55322..56287 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_47_length_66049_cov_4.331180:55322..56287+
coding sequence from alignment at NODE_47_length_66049_cov_4.331180:55322..56287+

mRNA sequence

>Gcaud8029.t1 ID=Gcaud8029.t1|Name=Gcaud8029.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=322bp
MADLGWCTIESDPGVFTELLREIGVKNVQVEELYALDKHLIAQYGQVYGL
VFLFKYRADERNIAQNRPGRLCVPPPESLFFANQTITNACATQALLSIVM
NTSSLSIGEELSRFKEFSTGMDSMTKGMVVSNSEVIRAAHNSFAPQHQFV
VEDSQSVEKEDPFHFVAYIPHEGKVYELDGLQEGPREHGAYTEGTDWLDV
VTPIISQRMEEYSGSEIRFNIMMLVEDPRERLEAEVAKLRGGTEANAGKI
SSLEAELAQQMEKHERWRCENVRRRWNFVPFIVELFKAMAESGQAEELIA
DAKAKKERDYEKLMEKQNKQT*

spliced messenger RNA

>Gcaud8029.t1 ID=Gcaud8029.t1|Name=Gcaud8029.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=966bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:55322..56287+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGATCTAGGCTGGTGTACAATAGAGTCCGATCCAGGTGTGTTCAC
GGAGCTGCTGCGCGAAATTGGCGTCAAGAATGTGCAGGTTGAGGAACTAT
ATGCGCTGGACAAACATTTGATAGCGCAGTATGGTCAGGTCTATGGACTC
GTGTTTCTGTTCAAATATCGCGCGGATGAACGCAATATCGCACAAAACAG
ACCCGGGAGGCTCTGCGTGCCGCCGCCTGAATCGTTGTTCTTTGCGAATC
AGACCATCACCAACGCGTGTGCCACACAAGCGCTGCTTTCCATCGTGATG
AACACCTCATCTCTTTCCATAGGGGAGGAGCTTTCCAGATTCAAAGAGTT
TTCAACAGGCATGGATTCGATGACAAAAGGAATGGTGGTATCCAATTCGG
AAGTGATCCGTGCCGCGCACAATTCTTTTGCACCACAACATCAGTTCGTT
GTGGAAGACAGTCAGTCTGTCGAAAAGGAGGATCCATTCCATTTTGTAGC
GTACATTCCACATGAAGGCAAGGTGTACGAACTTGACGGCTTGCAGGAGG
GACCGCGGGAACATGGCGCATACACAGAAGGTACCGATTGGTTGGACGTA
GTAACGCCCATTATTTCGCAGCGAATGGAAGAGTACAGCGGCAGCGAGAT
TCGTTTCAACATCATGATGCTTGTGGAAGACCCTCGGGAACGGCTCGAGG
CTGAGGTGGCGAAACTACGGGGCGGTACGGAAGCCAACGCCGGAAAGATT
TCGTCTCTTGAAGCAGAACTTGCGCAGCAGATGGAGAAACATGAGAGGTG
GCGCTGTGAAAACGTGCGAAGACGGTGGAATTTTGTTCCTTTCATCGTCG
AATTGTTCAAAGCGATGGCAGAATCAGGACAAGCGGAGGAGCTGATTGCT
GACGCTAAGGCGAAAAAAGAAAGGGACTATGAAAAATTAATGGAGAAACA
AAACAAGCAAACTTAA

protein sequence of Gcaud8029.t1

>Gcaud8029.t1 ID=Gcaud8029.t1|Name=Gcaud8029.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=322bp
MADLGWCTIESDPGVFTELLREIGVKNVQVEELYALDKHLIAQYGQVYGL
VFLFKYRADERNIAQNRPGRLCVPPPESLFFANQTITNACATQALLSIVM
NTSSLSIGEELSRFKEFSTGMDSMTKGMVVSNSEVIRAAHNSFAPQHQFV
VEDSQSVEKEDPFHFVAYIPHEGKVYELDGLQEGPREHGAYTEGTDWLDV
VTPIISQRMEEYSGSEIRFNIMMLVEDPRERLEAEVAKLRGGTEANAGKI
SSLEAELAQQMEKHERWRCENVRRRWNFVPFIVELFKAMAESGQAEELIA
DAKAKKERDYEKLMEKQNKQT*

mRNA from alignment at NODE_47_length_66049_cov_4.331180:55322..56287+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8029.t1 ID=Gcaud8029.t1|Name=Gcaud8029.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=966bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:55322..56287+ (Gracilaria caudata M_176_S67 male)
ATGGCGGATCTAGGCTGGTGTACAATAGAGTCCGATCCAGGTGTGTTCAC
GGAGCTGCTGCGCGAAATTGGCGTCAAGAATGTGCAGGTTGAGGAACTAT
ATGCGCTGGACAAACATTTGATAGCGCAGTATGGTCAGGTCTATGGACTC
GTGTTTCTGTTCAAATATCGCGCGGATGAACGCAATATCGCACAAAACAG
ACCCGGGAGGCTCTGCGTGCCGCCGCCTGAATCGTTGTTCTTTGCGAATC
AGACCATCACCAACGCGTGTGCCACACAAGCGCTGCTTTCCATCGTGATG
AACACCTCATCTCTTTCCATAGGGGAGGAGCTTTCCAGATTCAAAGAGTT
TTCAACAGGCATGGATTCGATGACAAAAGGAATGGTGGTATCCAATTCGG
AAGTGATCCGTGCCGCGCACAATTCTTTTGCACCACAACATCAGTTCGTT
GTGGAAGACAGTCAGTCTGTCGAAAAGGAGGATCCATTCCATTTTGTAGC
GTACATTCCACATGAAGGCAAGGTGTACGAACTTGACGGCTTGCAGGAGG
GACCGCGGGAACATGGCGCATACACAGAAGGTACCGATTGGTTGGACGTA
GTAACGCCCATTATTTCGCAGCGAATGGAAGAGTACAGCGGCAGCGAGAT
TCGTTTCAACATCATGATGCTTGTGGAAGACCCTCGGGAACGGCTCGAGG
CTGAGGTGGCGAAACTACGGGGCGGTACGGAAGCCAACGCCGGAAAGATT
TCGTCTCTTGAAGCAGAACTTGCGCAGCAGATGGAGAAACATGAGAGGTG
GCGCTGTGAAAACGTGCGAAGACGGTGGAATTTTGTTCCTTTCATCGTCG
AATTGTTCAAAGCGATGGCAGAATCAGGACAAGCGGAGGAGCTGATTGCT
GACGCTAAGGCGAAAAAAGAAAGGGACTATGAAAAATTAATGGAGAAACA
AAACAAGCAAACTTAA

Coding sequence (CDS) from alignment at NODE_47_length_66049_cov_4.331180:55322..56287+

>Gcaud8029.t1 ID=Gcaud8029.t1|Name=Gcaud8029.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=966bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:55322..56287+ (Gracilaria caudata M_176_S67 male)
ATGGCGGATCTAGGCTGGTGTACAATAGAGTCCGATCCAGGTGTGTTCAC
GGAGCTGCTGCGCGAAATTGGCGTCAAGAATGTGCAGGTTGAGGAACTAT
ATGCGCTGGACAAACATTTGATAGCGCAGTATGGTCAGGTCTATGGACTC
GTGTTTCTGTTCAAATATCGCGCGGATGAACGCAATATCGCACAAAACAG
ACCCGGGAGGCTCTGCGTGCCGCCGCCTGAATCGTTGTTCTTTGCGAATC
AGACCATCACCAACGCGTGTGCCACACAAGCGCTGCTTTCCATCGTGATG
AACACCTCATCTCTTTCCATAGGGGAGGAGCTTTCCAGATTCAAAGAGTT
TTCAACAGGCATGGATTCGATGACAAAAGGAATGGTGGTATCCAATTCGG
AAGTGATCCGTGCCGCGCACAATTCTTTTGCACCACAACATCAGTTCGTT
GTGGAAGACAGTCAGTCTGTCGAAAAGGAGGATCCATTCCATTTTGTAGC
GTACATTCCACATGAAGGCAAGGTGTACGAACTTGACGGCTTGCAGGAGG
GACCGCGGGAACATGGCGCATACACAGAAGGTACCGATTGGTTGGACGTA
GTAACGCCCATTATTTCGCAGCGAATGGAAGAGTACAGCGGCAGCGAGAT
TCGTTTCAACATCATGATGCTTGTGGAAGACCCTCGGGAACGGCTCGAGG
CTGAGGTGGCGAAACTACGGGGCGGTACGGAAGCCAACGCCGGAAAGATT
TCGTCTCTTGAAGCAGAACTTGCGCAGCAGATGGAGAAACATGAGAGGTG
GCGCTGTGAAAACGTGCGAAGACGGTGGAATTTTGTTCCTTTCATCGTCG
AATTGTTCAAAGCGATGGCAGAATCAGGACAAGCGGAGGAGCTGATTGCT
GACGCTAAGGCGAAAAAAGAAAGGGACTATGAAAAATTAATGGAGAAACA
AAACAAGCAAACTTAA