Gcaud8026.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8026.t1
Unique NameGcaud8026.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_47_length_66049_cov_4.331180contigNODE_47_length_66049_cov_4.331180:35213..36113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8026Gcaud8026Gracilaria caudata M_176_S67 malegeneNODE_47_length_66049_cov_4.331180 35213..36113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8026.t1Gcaud8026.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_47_length_66049_cov_4.331180 35213..36113 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8026.t1.start1Gcaud8026.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_47_length_66049_cov_4.331180 35213..35215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8026.t1.CDS1Gcaud8026.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_47_length_66049_cov_4.331180 35213..35659 +
Gcaud8026.t1.CDS2Gcaud8026.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_47_length_66049_cov_4.331180 35746..35763 +
Gcaud8026.t1.CDS3Gcaud8026.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_47_length_66049_cov_4.331180 35832..35851 +
Gcaud8026.t1.CDS4Gcaud8026.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_47_length_66049_cov_4.331180 35979..36014 +
Gcaud8026.t1.CDS5Gcaud8026.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_47_length_66049_cov_4.331180 36095..36113 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8026.t1.exon1Gcaud8026.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_47_length_66049_cov_4.331180 35213..35659 +
Gcaud8026.t1.exon2Gcaud8026.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_47_length_66049_cov_4.331180 35746..35763 +
Gcaud8026.t1.exon3Gcaud8026.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_47_length_66049_cov_4.331180 35832..35851 +
Gcaud8026.t1.exon4Gcaud8026.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_47_length_66049_cov_4.331180 35979..36014 +
Gcaud8026.t1.exon5Gcaud8026.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_47_length_66049_cov_4.331180 36095..36113 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8026.t1.intron1Gcaud8026.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_47_length_66049_cov_4.331180 35660..35745 +
Gcaud8026.t1.intron2Gcaud8026.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_47_length_66049_cov_4.331180 35764..35831 +
Gcaud8026.t1.intron3Gcaud8026.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_47_length_66049_cov_4.331180 35852..35978 +
Gcaud8026.t1.intron4Gcaud8026.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_47_length_66049_cov_4.331180 36015..36094 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8026.t1.stop1Gcaud8026.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_47_length_66049_cov_4.331180 36111..36113 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8026.t1 ID=Gcaud8026.t1|Name=Gcaud8026.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=180bp
MGRASAVVERRRPDVQTKNAQNRSSLLFKERAVFIDAFLTSYASLPDNLL
GLPPGKTLRTYLEEAFEEEVAEFRKAAVFSDKNATHVRFYTAYATHEKDQ
VAGYLSVDVTDDGSKLYLRQLAVSPLFQRMGVAKKLVWFAIEDVGNVCNF
LERRTLFSHDTRASTAHRLDYWGWFLSTR*
back to top

spliced messenger RNA

>Gcaud8026.t1 ID=Gcaud8026.t1|Name=Gcaud8026.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=540bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:35213..36113+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAGGGCATCAGCTGTTGTGGAAAGAAGGCGTCCAGACGTACAAAC
CAAAAACGCGCAAAATCGCTCGTCGCTACTGTTCAAGGAACGAGCCGTGT
TCATCGATGCCTTTTTAACGTCATACGCATCGTTACCAGATAATTTGCTT
GGACTACCACCAGGCAAGACACTTCGCACATATTTGGAGGAAGCATTTGA
AGAAGAAGTGGCGGAATTTCGCAAAGCGGCAGTATTTTCTGACAAAAACG
CCACTCACGTTCGTTTCTACACGGCGTACGCAACGCATGAGAAAGACCAA
GTCGCTGGGTACTTAAGTGTGGATGTGACTGACGACGGGTCCAAATTATA
CCTGAGACAACTTGCTGTTTCTCCTCTCTTTCAAAGAATGGGTGTCGCGA
AGAAGTTGGTTTGGTTTGCAATCGAAGACGTAGGAAATGTGTGCAACTTC
CTTGAGCGCAGAACTCTTTTCTCACATGATACCAGAGCATCCACAGCACA
CAGGCTGGACTATTGGGGATGGTTCCTAAGCACGCGTTGA
back to top

protein sequence of Gcaud8026.t1

>Gcaud8026.t1 ID=Gcaud8026.t1|Name=Gcaud8026.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=180bp
MGRASAVVERRRPDVQTKNAQNRSSLLFKERAVFIDAFLTSYASLPDNLL
GLPPGKTLRTYLEEAFEEEVAEFRKAAVFSDKNATHVRFYTAYATHEKDQ
VAGYLSVDVTDDGSKLYLRQLAVSPLFQRMGVAKKLVWFAIEDVGNVCNF
LERRTLFSHDTRASTAHRLDYWGWFLSTR*
back to top

mRNA from alignment at NODE_47_length_66049_cov_4.331180:35213..36113+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8026.t1 ID=Gcaud8026.t1|Name=Gcaud8026.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=901bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:35213..36113+ (Gracilaria caudata M_176_S67 male)
ATGGGAAGGGCATCAGCTGTTGTGGAAAGAAGGCGTCCAGACGTACAAAC
CAAAAACGCGCAAAATCGCTCGTCGCTACTGTTCAAGGAACGAGCCGTGT
TCATCGATGCCTTTTTAACGTCATACGCATCGTTACCAGATAATTTGCTT
GGACTACCACCAGGCAAGACACTTCGCACATATTTGGAGGAAGCATTTGA
AGAAGAAGTGGCGGAATTTCGCAAAGCGGCAGTATTTTCTGACAAAAACG
CCACTCACGTTCGTTTCTACACGGCGTACGCAACGCATGAGAAAGACCAA
GTCGCTGGGTACTTAAGTGTGGATGTGACTGACGACGGGTCCAAATTATA
CCTGAGACAACTTGCTGTTTCTCCTCTCTTTCAAAGAATGGGTGTCGCGA
AGAAGTTGGTTTGGTTTGCAATCGAAGACGTAGGAAATGTGTGCAACGTG
AGTGTTTCTTGTCGAAAGACAAATGTGGAGGCTATTGCATTTTACGAGTC
GCAGGGATTTTGTACTGACGCTTCGTGTCACAGTTCCTTGAGCGCAGAAC
TGTACGTGGGGTTTGTGAAAAACCTTTGAATAGGTGAGGTTCGGCAAAAT
CATGAGTTCCAAAATGCAGCTTTTCTCACATGATACCAGGTATGTTGTGC
CATCTGCGAGGGGCTTAATGTTCGAGTTCAAGTAGCAGTCTATTTCCCCA
GGTGCACTTGTTCAGTCACAGCTCAATGGCTGACGAAGGGATATTTCCGC
TGGTGGAGAAAAGCAGAGCATCCACAGCACACAGGCTGGACTATTGGGGA
TGGTGTTCCAAAGCTCACACGATGAGCTCCATGCGTGGTGTTGCCCACAG
TTTTGGTTCTTTCTCGATACATGGGTGCCTAGGTTCCTAAGCACGCGTTG
A
back to top

Coding sequence (CDS) from alignment at NODE_47_length_66049_cov_4.331180:35213..36113+

>Gcaud8026.t1 ID=Gcaud8026.t1|Name=Gcaud8026.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=540bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:35213..36113+ (Gracilaria caudata M_176_S67 male)
ATGGGAAGGGCATCAGCTGTTGTGGAAAGAAGGCGTCCAGACGTACAAAC
CAAAAACGCGCAAAATCGCTCGTCGCTACTGTTCAAGGAACGAGCCGTGT
TCATCGATGCCTTTTTAACGTCATACGCATCGTTACCAGATAATTTGCTT
GGACTACCACCAGGCAAGACACTTCGCACATATTTGGAGGAAGCATTTGA
AGAAGAAGTGGCGGAATTTCGCAAAGCGGCAGTATTTTCTGACAAAAACG
CCACTCACGTTCGTTTCTACACGGCGTACGCAACGCATGAGAAAGACCAA
GTCGCTGGGTACTTAAGTGTGGATGTGACTGACGACGGGTCCAAATTATA
CCTGAGACAACTTGCTGTTTCTCCTCTCTTTCAAAGAATGGGTGTCGCGA
AGAAGTTGGTTTGGTTTGCAATCGAAGACGTAGGAAATGTGTGCAACTTC
CTTGAGCGCAGAACTCTTTTCTCACATGATACCAGAGCATCCACAGCACA
CAGGCTGGACTATTGGGGATGGTTCCTAAGCACGCGTTGA
back to top