Gcaud8018.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8018.t1
Unique Name	Gcaud8018.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	530

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_47_length_66049_cov_4.331180	contig	NODE_47_length_66049_cov_4.331180:11790..13379 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ31688
Preferred name	DWF1
PFAMs	FAD_binding_4
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00522,RC01887,RC02419
KEGG ko	ko:K09828
KEGG Reaction	R01457,R03689,R05703,R07488,R07493,R07498,R07499,R07507,R11096
KEGG Pathway	ko00100,ko01100,ko01110,map00100,map01100,map01110
KEGG Module	M00101
GOs	GO:0000902,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006629,GO:0006694,GO:0006725,GO:0008150,GO:0008152,GO:0008202,GO:0008610,GO:0009058,GO:0009653,GO:0009698,GO:0009808,GO:0009826,GO:0009832,GO:0009834,GO:0009987,GO:0010817,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016128,GO:0016129,GO:0016131,GO:0016132,GO:0019748,GO:0031090,GO:0031224,GO:0032502,GO:0032989,GO:0040007,GO:0042445,GO:0042446,GO:0042546,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048589,GO:0048856,GO:0048869,GO:0060560,GO:0065007,GO:0065008,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0098588,GO:0098805,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617
Evalue	6.04e-181
EggNOG OGs	COG0277@1\|root,KOG1262@2759\|Eukaryota,37Q6T@33090\|Viridiplantae,3GC89@35493\|Streptophyta
EC	1.3.1.72
Description	Delta(24)-sterol
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8018	Gcaud8018	Gracilaria caudata M_176_S67 male	gene	NODE_47_length_66049_cov_4.331180 11790..13379 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8018.t1.stop1	Gcaud8018.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_47_length_66049_cov_4.331180 11790..11792 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8018.t1.CDS1	Gcaud8018.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_47_length_66049_cov_4.331180 11790..13379 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8018.t1.exon1	Gcaud8018.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_47_length_66049_cov_4.331180 11790..13379 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8018.t1.start1	Gcaud8018.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_47_length_66049_cov_4.331180 13377..13379 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8018.t1	Gcaud8018.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_47_length_66049_cov_4.331180 11790..13379 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_47_length_66049_cov_4.331180:11790..13379-
coding sequence from alignment at NODE_47_length_66049_cov_4.331180:11790..13379-

mRNA sequence

>Gcaud8018.t1 ID=Gcaud8018.t1|Name=Gcaud8018.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=530bp
MQFRWIVIIPVVLPLSFVWARLHLLRAWVKALIRGPATIRKHLDRVERVR
SSLEKHRPGYHGLVCTARPSFWSVTNRDSAYKRSSRYEVDLSDLADIVEV
DMDRMIVKMEPYVTMGYITATLLKMGVCIPIVPEYDDLTVGGLVCGYGIE
GSSHKYGLFYDEVVSMEIVLSGGRAVTATRDNEHSDLFYAIPWSYGAIGM
LVGVEMRIIKVKPYMKVTYYPVAGTIEEMCKAWNHFLVPTDKPWAEYVEG
LMYSSNRGVIMTADYVDEDEANKGKINAMGYWFKPWFHKHVKEAILDKTV
DGSPVVEYVPTRDYYHRHTRSLYWEADLLVPMGNHVLFRWFLGWLMPPRV
SFLKLTTFGKMWEYYTSRFVAQDILVPLRKTAECMELMHDEYDIYPLWLC
PHRVFKTRRGTMLDCEKDYDKGELDQGDTKEAQMFTDLGIWYTPGHILRK
EKFDNAAASHKLEQWLIENHGYQTLYAVSELNEEDFWKMFDKTLYQKCRE
KYKAHETFMDVYYKVGRKNTSASALAANK*

spliced messenger RNA

>Gcaud8018.t1 ID=Gcaud8018.t1|Name=Gcaud8018.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:11790..13379- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATTTCGATGGATCGTCATCATTCCTGTTGTGCTCCCGTTGTCTTT
TGTCTGGGCTCGTCTTCACTTGCTACGAGCATGGGTCAAAGCGTTAATTC
GCGGGCCTGCCACGATTCGCAAGCATCTTGACCGTGTTGAACGAGTACGT
TCTAGTCTGGAGAAGCATCGCCCTGGTTATCATGGCTTGGTTTGCACGGC
TCGACCGTCGTTTTGGAGCGTTACGAATCGCGACTCGGCGTACAAACGGA
GTTCCCGATATGAAGTGGATCTTTCTGACTTGGCGGACATTGTCGAGGTA
GACATGGATCGGATGATAGTGAAGATGGAGCCATATGTAACGATGGGATA
CATTACCGCTACTTTGTTGAAAATGGGGGTCTGTATCCCGATTGTCCCTG
AATACGACGATCTCACTGTTGGAGGGTTGGTTTGCGGGTACGGTATCGAA
GGTTCAAGTCATAAGTACGGCCTGTTCTATGATGAAGTTGTATCAATGGA
AATCGTCCTTTCGGGAGGTCGTGCAGTAACCGCTACCAGAGACAACGAAC
ACAGCGATCTTTTCTATGCCATCCCTTGGTCTTACGGCGCCATTGGAATG
TTGGTTGGGGTTGAAATGCGCATCATAAAAGTGAAGCCGTACATGAAAGT
GACATACTATCCCGTGGCAGGAACTATTGAAGAAATGTGTAAGGCTTGGA
ACCACTTTCTCGTTCCCACCGACAAGCCTTGGGCGGAGTATGTGGAAGGC
TTGATGTATAGCTCCAATCGCGGAGTGATCATGACTGCTGATTACGTTGA
TGAAGACGAAGCCAACAAAGGAAAGATAAATGCGATGGGCTACTGGTTTA
AGCCTTGGTTTCATAAGCATGTCAAGGAAGCAATTCTAGACAAAACAGTA
GATGGTTCGCCTGTCGTTGAGTATGTTCCAACCAGAGACTACTATCATCG
ACATACCAGGAGTCTCTATTGGGAAGCAGATTTGCTGGTGCCAATGGGAA
ACCACGTCTTGTTTCGATGGTTCCTGGGATGGCTCATGCCCCCAAGGGTG
AGCTTTCTGAAGCTAACAACATTTGGGAAAATGTGGGAGTACTACACGTC
GCGATTTGTGGCACAAGATATTCTTGTTCCACTGCGTAAGACGGCTGAGT
GTATGGAGCTGATGCACGATGAGTACGATATTTACCCATTATGGTTATGT
CCGCATCGTGTTTTCAAAACACGAAGGGGAACAATGTTAGACTGTGAGAA
AGACTACGACAAAGGTGAGTTGGATCAGGGGGACACGAAAGAAGCGCAAA
TGTTTACAGATCTTGGTATTTGGTACACACCAGGTCATATTCTTCGAAAG
GAGAAGTTCGACAATGCGGCTGCGAGTCACAAGCTCGAACAATGGCTTAT
CGAGAACCATGGTTATCAAACGCTCTACGCCGTGTCCGAGCTGAATGAAG
AAGACTTCTGGAAGATGTTCGACAAAACGTTATATCAGAAATGCAGGGAG
AAGTACAAAGCCCATGAGACTTTCATGGATGTGTATTATAAGGTTGGCCG
TAAGAACACCAGCGCTTCAGCACTCGCAGCGAATAAATGA

protein sequence of Gcaud8018.t1

>Gcaud8018.t1 ID=Gcaud8018.t1|Name=Gcaud8018.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=530bp
MQFRWIVIIPVVLPLSFVWARLHLLRAWVKALIRGPATIRKHLDRVERVR
SSLEKHRPGYHGLVCTARPSFWSVTNRDSAYKRSSRYEVDLSDLADIVEV
DMDRMIVKMEPYVTMGYITATLLKMGVCIPIVPEYDDLTVGGLVCGYGIE
GSSHKYGLFYDEVVSMEIVLSGGRAVTATRDNEHSDLFYAIPWSYGAIGM
LVGVEMRIIKVKPYMKVTYYPVAGTIEEMCKAWNHFLVPTDKPWAEYVEG
LMYSSNRGVIMTADYVDEDEANKGKINAMGYWFKPWFHKHVKEAILDKTV
DGSPVVEYVPTRDYYHRHTRSLYWEADLLVPMGNHVLFRWFLGWLMPPRV
SFLKLTTFGKMWEYYTSRFVAQDILVPLRKTAECMELMHDEYDIYPLWLC
PHRVFKTRRGTMLDCEKDYDKGELDQGDTKEAQMFTDLGIWYTPGHILRK
EKFDNAAASHKLEQWLIENHGYQTLYAVSELNEEDFWKMFDKTLYQKCRE
KYKAHETFMDVYYKVGRKNTSASALAANK*

mRNA from alignment at NODE_47_length_66049_cov_4.331180:11790..13379-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8018.t1 ID=Gcaud8018.t1|Name=Gcaud8018.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1590bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:11790..13379- (Gracilaria caudata M_176_S67 male)
ATGCAATTTCGATGGATCGTCATCATTCCTGTTGTGCTCCCGTTGTCTTT
TGTCTGGGCTCGTCTTCACTTGCTACGAGCATGGGTCAAAGCGTTAATTC
GCGGGCCTGCCACGATTCGCAAGCATCTTGACCGTGTTGAACGAGTACGT
TCTAGTCTGGAGAAGCATCGCCCTGGTTATCATGGCTTGGTTTGCACGGC
TCGACCGTCGTTTTGGAGCGTTACGAATCGCGACTCGGCGTACAAACGGA
GTTCCCGATATGAAGTGGATCTTTCTGACTTGGCGGACATTGTCGAGGTA
GACATGGATCGGATGATAGTGAAGATGGAGCCATATGTAACGATGGGATA
CATTACCGCTACTTTGTTGAAAATGGGGGTCTGTATCCCGATTGTCCCTG
AATACGACGATCTCACTGTTGGAGGGTTGGTTTGCGGGTACGGTATCGAA
GGTTCAAGTCATAAGTACGGCCTGTTCTATGATGAAGTTGTATCAATGGA
AATCGTCCTTTCGGGAGGTCGTGCAGTAACCGCTACCAGAGACAACGAAC
ACAGCGATCTTTTCTATGCCATCCCTTGGTCTTACGGCGCCATTGGAATG
TTGGTTGGGGTTGAAATGCGCATCATAAAAGTGAAGCCGTACATGAAAGT
GACATACTATCCCGTGGCAGGAACTATTGAAGAAATGTGTAAGGCTTGGA
ACCACTTTCTCGTTCCCACCGACAAGCCTTGGGCGGAGTATGTGGAAGGC
TTGATGTATAGCTCCAATCGCGGAGTGATCATGACTGCTGATTACGTTGA
TGAAGACGAAGCCAACAAAGGAAAGATAAATGCGATGGGCTACTGGTTTA
AGCCTTGGTTTCATAAGCATGTCAAGGAAGCAATTCTAGACAAAACAGTA
GATGGTTCGCCTGTCGTTGAGTATGTTCCAACCAGAGACTACTATCATCG
ACATACCAGGAGTCTCTATTGGGAAGCAGATTTGCTGGTGCCAATGGGAA
ACCACGTCTTGTTTCGATGGTTCCTGGGATGGCTCATGCCCCCAAGGGTG
AGCTTTCTGAAGCTAACAACATTTGGGAAAATGTGGGAGTACTACACGTC
GCGATTTGTGGCACAAGATATTCTTGTTCCACTGCGTAAGACGGCTGAGT
GTATGGAGCTGATGCACGATGAGTACGATATTTACCCATTATGGTTATGT
CCGCATCGTGTTTTCAAAACACGAAGGGGAACAATGTTAGACTGTGAGAA
AGACTACGACAAAGGTGAGTTGGATCAGGGGGACACGAAAGAAGCGCAAA
TGTTTACAGATCTTGGTATTTGGTACACACCAGGTCATATTCTTCGAAAG
GAGAAGTTCGACAATGCGGCTGCGAGTCACAAGCTCGAACAATGGCTTAT
CGAGAACCATGGTTATCAAACGCTCTACGCCGTGTCCGAGCTGAATGAAG
AAGACTTCTGGAAGATGTTCGACAAAACGTTATATCAGAAATGCAGGGAG
AAGTACAAAGCCCATGAGACTTTCATGGATGTGTATTATAAGGTTGGCCG
TAAGAACACCAGCGCTTCAGCACTCGCAGCGAATAAATGA

Coding sequence (CDS) from alignment at NODE_47_length_66049_cov_4.331180:11790..13379-

>Gcaud8018.t1 ID=Gcaud8018.t1|Name=Gcaud8018.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1590bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:11790..13379- (Gracilaria caudata M_176_S67 male)
ATGCAATTTCGATGGATCGTCATCATTCCTGTTGTGCTCCCGTTGTCTTT
TGTCTGGGCTCGTCTTCACTTGCTACGAGCATGGGTCAAAGCGTTAATTC
GCGGGCCTGCCACGATTCGCAAGCATCTTGACCGTGTTGAACGAGTACGT
TCTAGTCTGGAGAAGCATCGCCCTGGTTATCATGGCTTGGTTTGCACGGC
TCGACCGTCGTTTTGGAGCGTTACGAATCGCGACTCGGCGTACAAACGGA
GTTCCCGATATGAAGTGGATCTTTCTGACTTGGCGGACATTGTCGAGGTA
GACATGGATCGGATGATAGTGAAGATGGAGCCATATGTAACGATGGGATA
CATTACCGCTACTTTGTTGAAAATGGGGGTCTGTATCCCGATTGTCCCTG
AATACGACGATCTCACTGTTGGAGGGTTGGTTTGCGGGTACGGTATCGAA
GGTTCAAGTCATAAGTACGGCCTGTTCTATGATGAAGTTGTATCAATGGA
AATCGTCCTTTCGGGAGGTCGTGCAGTAACCGCTACCAGAGACAACGAAC
ACAGCGATCTTTTCTATGCCATCCCTTGGTCTTACGGCGCCATTGGAATG
TTGGTTGGGGTTGAAATGCGCATCATAAAAGTGAAGCCGTACATGAAAGT
GACATACTATCCCGTGGCAGGAACTATTGAAGAAATGTGTAAGGCTTGGA
ACCACTTTCTCGTTCCCACCGACAAGCCTTGGGCGGAGTATGTGGAAGGC
TTGATGTATAGCTCCAATCGCGGAGTGATCATGACTGCTGATTACGTTGA
TGAAGACGAAGCCAACAAAGGAAAGATAAATGCGATGGGCTACTGGTTTA
AGCCTTGGTTTCATAAGCATGTCAAGGAAGCAATTCTAGACAAAACAGTA
GATGGTTCGCCTGTCGTTGAGTATGTTCCAACCAGAGACTACTATCATCG
ACATACCAGGAGTCTCTATTGGGAAGCAGATTTGCTGGTGCCAATGGGAA
ACCACGTCTTGTTTCGATGGTTCCTGGGATGGCTCATGCCCCCAAGGGTG
AGCTTTCTGAAGCTAACAACATTTGGGAAAATGTGGGAGTACTACACGTC
GCGATTTGTGGCACAAGATATTCTTGTTCCACTGCGTAAGACGGCTGAGT
GTATGGAGCTGATGCACGATGAGTACGATATTTACCCATTATGGTTATGT
CCGCATCGTGTTTTCAAAACACGAAGGGGAACAATGTTAGACTGTGAGAA
AGACTACGACAAAGGTGAGTTGGATCAGGGGGACACGAAAGAAGCGCAAA
TGTTTACAGATCTTGGTATTTGGTACACACCAGGTCATATTCTTCGAAAG
GAGAAGTTCGACAATGCGGCTGCGAGTCACAAGCTCGAACAATGGCTTAT
CGAGAACCATGGTTATCAAACGCTCTACGCCGTGTCCGAGCTGAATGAAG
AAGACTTCTGGAAGATGTTCGACAAAACGTTATATCAGAAATGCAGGGAG
AAGTACAAAGCCCATGAGACTTTCATGGATGTGTATTATAAGGTTGGCCG
TAAGAACACCAGCGCTTCAGCACTCGCAGCGAATAAATGA