|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 70448.A0A090MAV9 |
| PFAMs | Myb_DNA-binding |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.12e-17 |
| EggNOG OGs | 2C4RN@1|root,2RIEW@2759|Eukaryota |
| Description | DNA-binding transcription factor activity |
| COG category | K |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8014.t1.stop1 | Gcaud8014.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_47_length_66049_cov_4.331180 3389..3391 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud8014.t1.start1 | Gcaud8014.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_47_length_66049_cov_4.331180 4298..4300 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud8014.t1 ID=Gcaud8014.t1|Name=Gcaud8014.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=242bp
MRSAPPGPAYYVYPPAPSQYVTHPAYYAPNYTYSTLPQHQPRPLHDPGAD
ARPPQALQTPAMTLSHTPVPQSMPAGASQQQTPLMTVPLYVNMPQFPVYS
QPLTPKKRRLQWTPELHSKFVKAVDQYGIDDAVPKLLLRAMNVPGLTREN
VASHLQKYRENLRKKKQELDSSGNHVRTDGSPEDSEVHGERSRDKAREQK
CKQNDMPIGSPSFEEAEILRVSNVSVAVICLFDHAVHPLRY* back to topspliced messenger RNA >Gcaud8014.t1 ID=Gcaud8014.t1|Name=Gcaud8014.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=726bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:3389..4300- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGATCTGCCCCGCCCGGTCCTGCTTATTACGTATATCCTCCAGCACC
TTCTCAATATGTAACCCACCCCGCTTACTATGCTCCAAACTACACATATA
GCACATTGCCACAACATCAACCACGACCCTTACACGATCCGGGGGCGGAT
GCGCGCCCACCCCAAGCGTTGCAAACACCGGCGATGACGCTTTCCCATAC
GCCCGTGCCACAGTCTATGCCTGCTGGTGCTTCACAGCAACAGACGCCAC
TTATGACGGTTCCCTTATATGTTAACATGCCTCAATTCCCAGTCTATTCC
CAACCACTAACACCCAAGAAACGGCGCTTACAGTGGACTCCCGAACTACA
TTCAAAGTTCGTGAAAGCCGTGGATCAATATGGAATCGATGACGCGGTCC
CAAAACTATTGTTGCGTGCCATGAATGTCCCTGGACTCACACGAGAGAAC
GTGGCCAGCCATTTGCAGAAATACCGAGAGAACTTGCGGAAGAAGAAGCA
GGAACTTGATTCTTCTGGCAATCATGTGCGTACCGATGGCTCTCCTGAAG
ACAGTGAGGTGCACGGGGAGAGGTCACGTGATAAGGCTCGGGAGCAGAAG
TGCAAACAGAATGATATGCCGATCGGTTCACCAAGCTTTGAAGAAGCGGA
GATTCTCAGAGTCTCCAACGTGAGCGTTGCCGTGATTTGCCTTTTTGATC
ATGCAGTTCACCCATTGCGATATTAG back to topprotein sequence of Gcaud8014.t1 >Gcaud8014.t1 ID=Gcaud8014.t1|Name=Gcaud8014.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=242bp
MRSAPPGPAYYVYPPAPSQYVTHPAYYAPNYTYSTLPQHQPRPLHDPGAD
ARPPQALQTPAMTLSHTPVPQSMPAGASQQQTPLMTVPLYVNMPQFPVYS
QPLTPKKRRLQWTPELHSKFVKAVDQYGIDDAVPKLLLRAMNVPGLTREN
VASHLQKYRENLRKKKQELDSSGNHVRTDGSPEDSEVHGERSRDKAREQK
CKQNDMPIGSPSFEEAEILRVSNVSVAVICLFDHAVHPLRY* back to topmRNA from alignment at NODE_47_length_66049_cov_4.331180:3389..4300- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud8014.t1 ID=Gcaud8014.t1|Name=Gcaud8014.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:3389..4300- (Gracilaria caudata M_176_S67 male)
ATGCGATCTGCCCCGCCCGGTCCTGCTTATTACGTATATCCTCCAGCACC
TTCTCAATATGTAACCCACCCCGCTTACTATGCTCCAAACTACACATATA
GCACATTGCCACAACATCAACCACGACCCTTACACGATCCGGGGGCGGAT
GCGCGCCCACCCCAAGCGTTGCAAACACCGGCGATGACGCTTTCCCATAC
GCCCGTGCCACAGTCTATGCCTGCTGGTGCTTCACAGCAACAGACGCCAC
TTATGACGGTTCCCTTATATGTTAACATGCCTCAATTCCCAGTCTATTCC
CAACCACTAACACCCAAGAAACGGCGCTTACAGTGGACTCCCGAACTACA
TTCAAAGTTCGTGAAAGCCGTGGATCAATATGGAATCGATGACGCGGTCC
CAAAACTATTGTTGCGTGCCATGAATGTCCCTGGACTCACACGAGAGAAC
GTGGCCAGCCATTTGCAGAAATACCGAGAGAACTTGCGGAAGAAGAAGCA
GGAACTTGATTCTTCTGGCAATCATGTGCGTACCGATGGCTCTCCTGAAG
ACAGTGAGGTGCACGGGGAGAGGTCACGTGATAAGGCTCGGGAGCAGAAG
TGCAAACAGAATGATATGCCGATCGGTTCGTCATCGCGGACGGTACGCTG
TGATTCATCGGATATTAGCAGCTCGGAACAAAATTCATTCCATCACCAGG
ACGGGGATGTGCATGAACGGGACGAACCTTTTCCTTTGCCAGACCAAGCT
TTGAAGAAGCGGAGATTCTCAGAGTCTCCAACGTGAGCGTTGCCGTGATT
TGCCTTTTTGATCATGCAGTTCACCCATTGCGATGTACGCACTAGCACAA
ATGACGATGTATGCTTTTCACCAAATGCTAACAGATGTACTACGGTGTCG
TGAACAGATTAG back to topCoding sequence (CDS) from alignment at NODE_47_length_66049_cov_4.331180:3389..4300- >Gcaud8014.t1 ID=Gcaud8014.t1|Name=Gcaud8014.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=726bp|location=Sequence derived from alignment at NODE_47_length_66049_cov_4.331180:3389..4300- (Gracilaria caudata M_176_S67 male)
ATGCGATCTGCCCCGCCCGGTCCTGCTTATTACGTATATCCTCCAGCACC
TTCTCAATATGTAACCCACCCCGCTTACTATGCTCCAAACTACACATATA
GCACATTGCCACAACATCAACCACGACCCTTACACGATCCGGGGGCGGAT
GCGCGCCCACCCCAAGCGTTGCAAACACCGGCGATGACGCTTTCCCATAC
GCCCGTGCCACAGTCTATGCCTGCTGGTGCTTCACAGCAACAGACGCCAC
TTATGACGGTTCCCTTATATGTTAACATGCCTCAATTCCCAGTCTATTCC
CAACCACTAACACCCAAGAAACGGCGCTTACAGTGGACTCCCGAACTACA
TTCAAAGTTCGTGAAAGCCGTGGATCAATATGGAATCGATGACGCGGTCC
CAAAACTATTGTTGCGTGCCATGAATGTCCCTGGACTCACACGAGAGAAC
GTGGCCAGCCATTTGCAGAAATACCGAGAGAACTTGCGGAAGAAGAAGCA
GGAACTTGATTCTTCTGGCAATCATGTGCGTACCGATGGCTCTCCTGAAG
ACAGTGAGGTGCACGGGGAGAGGTCACGTGATAAGGCTCGGGAGCAGAAG
TGCAAACAGAATGATATGCCGATCGGTTCACCAAGCTTTGAAGAAGCGGA
GATTCTCAGAGTCTCCAACGTGAGCGTTGCCGTGATTTGCCTTTTTGATC
ATGCAGTTCACCCATTGCGATATTAG back to top
|