Gcaud7994.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7994.t1
Unique NameGcaud7994.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_675_length_19862_cov_4.263113contigNODE_675_length_19862_cov_4.263113:9509..10804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005650791.1
PFAMsFKBP_C,PMSR
Max annot lvl3041|Chlorophyta
KEGG koko:K07304
Evalue1.78e-94
EggNOG OGsCOG0225@1|root,COG0545@1|root,KOG0549@2759|Eukaryota,KOG1635@2759|Eukaryota,37JIQ@33090|Viridiplantae,34ID2@3041|Chlorophyta
EC1.8.4.11
DescriptionPeptide methionine sulfoxide reductase
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7994Gcaud7994Gracilaria caudata M_176_S67 malegeneNODE_675_length_19862_cov_4.263113 9509..10804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7994.t1Gcaud7994.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_675_length_19862_cov_4.263113 9509..10804 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7994.t1.start1Gcaud7994.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_675_length_19862_cov_4.263113 9509..9511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7994.t1.CDS1Gcaud7994.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_675_length_19862_cov_4.263113 9509..9652 +
Gcaud7994.t1.CDS2Gcaud7994.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_675_length_19862_cov_4.263113 9735..10071 +
Gcaud7994.t1.CDS3Gcaud7994.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_675_length_19862_cov_4.263113 10158..10390 +
Gcaud7994.t1.CDS4Gcaud7994.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_675_length_19862_cov_4.263113 10478..10644 +
Gcaud7994.t1.CDS5Gcaud7994.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_675_length_19862_cov_4.263113 10738..10804 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7994.t1.exon1Gcaud7994.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_675_length_19862_cov_4.263113 9509..9652 +
Gcaud7994.t1.exon2Gcaud7994.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_675_length_19862_cov_4.263113 9735..10071 +
Gcaud7994.t1.exon3Gcaud7994.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_675_length_19862_cov_4.263113 10158..10390 +
Gcaud7994.t1.exon4Gcaud7994.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_675_length_19862_cov_4.263113 10478..10644 +
Gcaud7994.t1.exon5Gcaud7994.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_675_length_19862_cov_4.263113 10738..10804 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7994.t1.intron1Gcaud7994.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_675_length_19862_cov_4.263113 9653..9734 +
Gcaud7994.t1.intron2Gcaud7994.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_675_length_19862_cov_4.263113 10072..10157 +
Gcaud7994.t1.intron3Gcaud7994.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_675_length_19862_cov_4.263113 10391..10477 +
Gcaud7994.t1.intron4Gcaud7994.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_675_length_19862_cov_4.263113 10645..10737 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7994.t1.stop1Gcaud7994.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_675_length_19862_cov_4.263113 10802..10804 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7994.t1 ID=Gcaud7994.t1|Name=Gcaud7994.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=316bp
MRVATDGDSVNVHYTGYLDDGTQFDSSRGGEPLNFVIGAGKVIRGFDDAV
RGLRVGESRRSRIEAERAYGQRSDELIISISAGSIPKELKLKVGDRVPLS
NGLRASVLEVNDKEVRLDANHELAGKALTFDMQLVSFLEPVLQPARNGLK
RAIFGLGCFWGAELAFQRMEGVESTKVGYTQGQVVNPSYEQVCSGTTGHV
EAVAVDYDESVVSYEQLLELFWERLGKSALTLNQVGNDVGSQYRSGIYCL
DDSQQQMAHASCEKASERFGQAVVVEVKEAQDVAFYLAESYHQRYLEKGG
QSAEKGATETIRCYG*
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spliced messenger RNA

>Gcaud7994.t1 ID=Gcaud7994.t1|Name=Gcaud7994.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=948bp|location=Sequence derived from alignment at NODE_675_length_19862_cov_4.263113:9509..10804+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGTTGCTACTGATGGAGACTCTGTCAACGTGCACTACACCGGGTA
CCTGGATGACGGAACGCAGTTTGATTCCTCTCGAGGAGGCGAGCCGCTCA
ACTTTGTAATCGGAGCAGGCAAAGTAATTCGAGGGTTCGACGACGCTGTA
CGAGGTCTACGCGTGGGCGAATCTCGACGGTCTCGAATCGAAGCTGAAAG
AGCGTACGGACAACGATCTGATGAGCTTATTATAAGCATTTCTGCGGGTA
GCATACCGAAAGAGCTGAAATTGAAGGTTGGAGATCGCGTTCCTTTGTCG
AATGGTTTGAGGGCTAGTGTGCTTGAAGTTAATGACAAGGAGGTGCGACT
CGACGCGAATCATGAATTGGCTGGGAAGGCGTTGACGTTCGATATGCAAC
TTGTGAGCTTCTTAGAGCCGGTTCTGCAACCTGCGCGAAATGGGTTGAAA
CGGGCGATATTCGGACTGGGGTGCTTCTGGGGCGCTGAGCTTGCGTTCCA
GAGAATGGAAGGAGTGGAGAGCACGAAGGTGGGATACACGCAGGGACAGG
TTGTGAATCCATCTTACGAACAGGTGTGCTCCGGGACAACGGGGCATGTG
GAAGCCGTGGCCGTCGATTACGACGAATCAGTGGTGAGCTACGAACAGCT
GCTGGAACTATTCTGGGAGCGACTTGGCAAGTCTGCGCTGACACTGAACC
AAGTGGGCAATGATGTTGGAAGTCAATATCGAAGTGGAATTTATTGCTTG
GACGATTCGCAACAGCAAATGGCGCACGCGTCGTGTGAGAAGGCTAGCGA
GCGCTTTGGACAGGCGGTGGTGGTGGAAGTGAAGGAGGCGCAGGACGTTG
CGTTCTATCTGGCTGAGAGTTATCACCAACGATATCTGGAGAAAGGTGGA
CAGAGCGCGGAGAAGGGTGCCACCGAGACCATTCGATGCTACGGATGA
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protein sequence of Gcaud7994.t1

>Gcaud7994.t1 ID=Gcaud7994.t1|Name=Gcaud7994.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=316bp
MRVATDGDSVNVHYTGYLDDGTQFDSSRGGEPLNFVIGAGKVIRGFDDAV
RGLRVGESRRSRIEAERAYGQRSDELIISISAGSIPKELKLKVGDRVPLS
NGLRASVLEVNDKEVRLDANHELAGKALTFDMQLVSFLEPVLQPARNGLK
RAIFGLGCFWGAELAFQRMEGVESTKVGYTQGQVVNPSYEQVCSGTTGHV
EAVAVDYDESVVSYEQLLELFWERLGKSALTLNQVGNDVGSQYRSGIYCL
DDSQQQMAHASCEKASERFGQAVVVEVKEAQDVAFYLAESYHQRYLEKGG
QSAEKGATETIRCYG*
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mRNA from alignment at NODE_675_length_19862_cov_4.263113:9509..10804+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7994.t1 ID=Gcaud7994.t1|Name=Gcaud7994.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1296bp|location=Sequence derived from alignment at NODE_675_length_19862_cov_4.263113:9509..10804+ (Gracilaria caudata M_176_S67 male)
ATGAGGGTTGCTACTGATGGAGACTCTGTCAACGTGCACTACACCGGGTA
CCTGGATGACGGAACGCAGTTTGATTCCTCTCGAGGAGGCGAGCCGCTCA
ACTTTGTAATCGGAGCAGGCAAAGTAATTCGAGGGTTCGACGACGTACGT
ACATAGTCCAAGAAATGAAACGCATCGCAATTAAACACGTTGCAACATCT
AACAAAAAACGCTGACGTCAAAAAAGGCTGTACGAGGTCTACGCGTGGGC
GAATCTCGACGGTCTCGAATCGAAGCTGAAAGAGCGTACGGACAACGATC
TGATGAGCTTATTATAAGCATTTCTGCGGGTAGCATACCGAAAGAGCTGA
AATTGAAGGTTGGAGATCGCGTTCCTTTGTCGAATGGTTTGAGGGCTAGT
GTGCTTGAAGTTAATGACAAGGAGGTGCGACTCGACGCGAATCATGAATT
GGCTGGGAAGGCGTTGACGTTCGATATGCAACTTGTGAGCTTCTTAGAGC
CGGTTCTGCAACCTGCGCGAAATGGGTTGAAACGGGCGATATTCGGACTG
GGGTGCTTCTGGGGTACGTTTGATAGCTTGCTTGCTTGCGTTGTACGGGA
AAGCAGGCGTTTTCTGACCGGGATGGTTTTGTTTGTGGTGTGTTTTTAGG
CGCTGAGCTTGCGTTCCAGAGAATGGAAGGAGTGGAGAGCACGAAGGTGG
GATACACGCAGGGACAGGTTGTGAATCCATCTTACGAACAGGTGTGCTCC
GGGACAACGGGGCATGTGGAAGCCGTGGCCGTCGATTACGACGAATCAGT
GGTGAGCTACGAACAGCTGCTGGAACTATTCTGGGAGCGACTTGGCAAGT
CTGCGCTGACACTGAACCAAGTGGGCAATGATGTAAGTTAATTGAGATCC
TTGTTTTGTTTATCGTTGTTCGTTTGTGGCTAACGCGGAGCTGGCGATGT
GCACCGATACCAAAAAAAGGTTGGAAGTCAATATCGAAGTGGAATTTATT
GCTTGGACGATTCGCAACAGCAAATGGCGCACGCGTCGTGTGAGAAGGCT
AGCGAGCGCTTTGGACAGGCGGTGGTGGTGGAAGTGAAGGAGGCGCAGGA
CGTTGCGTTCTATCTGGCTGAGAGTTATCACCAACGGTACGTGCACAAAT
AGCTTGGCGACGTGCAGCTGTAGAGTTTGAACTTCGAGACGCCCGAGACT
AACTGGGCTTGGCGGTGCGCGCGCTACAGATATCTGGAGAAAGGTGGACA
GAGCGCGGAGAAGGGTGCCACCGAGACCATTCGATGCTACGGATGA
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Coding sequence (CDS) from alignment at NODE_675_length_19862_cov_4.263113:9509..10804+

>Gcaud7994.t1 ID=Gcaud7994.t1|Name=Gcaud7994.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=948bp|location=Sequence derived from alignment at NODE_675_length_19862_cov_4.263113:9509..10804+ (Gracilaria caudata M_176_S67 male)
ATGAGGGTTGCTACTGATGGAGACTCTGTCAACGTGCACTACACCGGGTA
CCTGGATGACGGAACGCAGTTTGATTCCTCTCGAGGAGGCGAGCCGCTCA
ACTTTGTAATCGGAGCAGGCAAAGTAATTCGAGGGTTCGACGACGCTGTA
CGAGGTCTACGCGTGGGCGAATCTCGACGGTCTCGAATCGAAGCTGAAAG
AGCGTACGGACAACGATCTGATGAGCTTATTATAAGCATTTCTGCGGGTA
GCATACCGAAAGAGCTGAAATTGAAGGTTGGAGATCGCGTTCCTTTGTCG
AATGGTTTGAGGGCTAGTGTGCTTGAAGTTAATGACAAGGAGGTGCGACT
CGACGCGAATCATGAATTGGCTGGGAAGGCGTTGACGTTCGATATGCAAC
TTGTGAGCTTCTTAGAGCCGGTTCTGCAACCTGCGCGAAATGGGTTGAAA
CGGGCGATATTCGGACTGGGGTGCTTCTGGGGCGCTGAGCTTGCGTTCCA
GAGAATGGAAGGAGTGGAGAGCACGAAGGTGGGATACACGCAGGGACAGG
TTGTGAATCCATCTTACGAACAGGTGTGCTCCGGGACAACGGGGCATGTG
GAAGCCGTGGCCGTCGATTACGACGAATCAGTGGTGAGCTACGAACAGCT
GCTGGAACTATTCTGGGAGCGACTTGGCAAGTCTGCGCTGACACTGAACC
AAGTGGGCAATGATGTTGGAAGTCAATATCGAAGTGGAATTTATTGCTTG
GACGATTCGCAACAGCAAATGGCGCACGCGTCGTGTGAGAAGGCTAGCGA
GCGCTTTGGACAGGCGGTGGTGGTGGAAGTGAAGGAGGCGCAGGACGTTG
CGTTCTATCTGGCTGAGAGTTATCACCAACGATATCTGGAGAAAGGTGGA
CAGAGCGCGGAGAAGGGTGCCACCGAGACCATTCGATGCTACGGATGA
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