Gcaud7972.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7972.t1
Unique NameGcaud7972.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length409
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_168_length_41232_cov_4.499891contigNODE_168_length_41232_cov_4.499891:5027..6253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog135651.CBN08022
Preferred nameTRIP13
PFAMsAAA
Max annot lvl33208|Metazoa
KEGG koko:K22399
GOsGO:0000003,GO:0000075,GO:0000166,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0001556,GO:0001673,GO:0003006,GO:0003674,GO:0003712,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007140,GO:0007141,GO:0007143,GO:0007144,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0009994,GO:0010467,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016070,GO:0017076,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030554,GO:0031323,GO:0031326,GO:0031577,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0035825,GO:0036094,GO:0040020,GO:0042802,GO:0043073,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048515,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0070192,GO:0070193,GO:0071173,GO:0071174,GO:0071695,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097659,GO:0098687,GO:0098813,GO:0140013,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903046,GO:1903047,GO:1903506,GO:1905818,GO:1905819,GO:2000241,GO:2000242,GO:2000816,GO:2001141,GO:2001251
Evalue1.45e-40
EggNOG OGsCOG0464@1|root,KOG0744@2759|Eukaryota,38HYG@33154|Opisthokonta,3BD53@33208|Metazoa,3CVJN@33213|Bilateria,40CD8@6231|Nematoda,1KV0W@119089|Chromadorea,40S0Y@6236|Rhabditida
DescriptionATPase family associated with various cellular activities (AAA)
COG categoryO
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7972Gcaud7972Gracilaria caudata M_176_S67 malegeneNODE_168_length_41232_cov_4.499891 5027..6253 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7972.t1.stop1Gcaud7972.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_168_length_41232_cov_4.499891 5027..5029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7972.t1.CDS1Gcaud7972.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_168_length_41232_cov_4.499891 5027..6253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7972.t1.exon1Gcaud7972.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_168_length_41232_cov_4.499891 5027..6253 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7972.t1.start1Gcaud7972.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_168_length_41232_cov_4.499891 6251..6253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7972.t1Gcaud7972.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_168_length_41232_cov_4.499891 5027..6253 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7972.t1 ID=Gcaud7972.t1|Name=Gcaud7972.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=409bp
MIADFVDHTVVAHMKVRLCQPEEEALSDGDLQVNTDSSQFKHVKNVLERT
VSDRTLGKGNLSPTFVQSLDPIPARGGTHWFRVECARVIVDEAPNTNEER
TGTPRQLKVHTHAYYLRTRILRWIGATVTYQPCLHLEGSWEALCLPAGLK
SKLMSYVRVRVMLGANVGCSGLVVLYGPPGTGKTSVAHALAHESAVRGGG
EVALVHVHTQLLLSKYFGESSRNLAEMFDKVMRLARRSGLVFVVIDELES
IALTRGNHASGSEPGDAVRVVNSLLQSVDRIAACGNIIMIGTTNLRDKLD
EALVDRCDLLVRMDEPQGAARAALVVSAVDELVRLGLVRNGTCEAREKAL
QAVAEAVHRCEQLSARRLRKVAVAALTETGVSVGADGDGAPSFERLIAGV
VRALEWSG*
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spliced messenger RNA

>Gcaud7972.t1 ID=Gcaud7972.t1|Name=Gcaud7972.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at NODE_168_length_41232_cov_4.499891:5027..6253- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCCGACTTCGTCGACCACACCGTTGTGGCTCACATGAAGGTTCG
CCTCTGTCAGCCTGAAGAAGAGGCACTCAGTGACGGAGACCTACAGGTGA
ATACCGACAGCTCGCAGTTCAAACATGTCAAGAACGTTTTAGAGCGTACT
GTTTCCGACCGCACTTTAGGGAAAGGCAACCTGAGCCCAACGTTCGTGCA
AAGCTTGGATCCAATCCCAGCGCGTGGTGGTACTCATTGGTTTCGCGTAG
AGTGCGCTCGAGTGATAGTGGACGAGGCGCCCAACACCAACGAAGAACGC
ACGGGTACACCACGCCAACTGAAGGTACACACTCACGCTTACTACTTGCG
AACCCGAATCTTGCGATGGATTGGGGCCACGGTCACGTATCAACCTTGTC
TGCATCTTGAAGGCAGCTGGGAAGCGCTGTGCCTGCCAGCGGGTCTGAAG
AGCAAGCTGATGTCTTATGTGCGCGTGCGCGTTATGCTGGGCGCAAATGT
GGGCTGCAGCGGGCTGGTGGTGCTCTACGGACCGCCCGGCACCGGCAAGA
CGAGTGTGGCGCATGCGCTCGCTCACGAGAGCGCTGTGCGTGGAGGAGGC
GAAGTAGCATTGGTTCACGTGCATACACAACTGCTTCTGAGCAAATACTT
CGGAGAAAGCTCGAGAAACCTGGCCGAGATGTTCGACAAGGTTATGCGTT
TGGCGCGAAGAAGTGGCCTCGTGTTCGTTGTCATAGACGAGCTGGAGAGC
ATTGCGCTTACGCGCGGCAACCATGCAAGCGGGTCGGAGCCAGGAGACGC
AGTGCGCGTGGTGAACTCGCTGCTGCAGAGTGTGGACAGAATCGCTGCGT
GTGGAAACATCATCATGATCGGCACAACCAATCTGCGCGACAAACTGGAC
GAGGCATTGGTAGATCGGTGCGACCTGCTGGTGAGAATGGACGAGCCGCA
GGGGGCGGCGCGTGCTGCGCTGGTGGTGTCGGCGGTGGACGAGCTGGTAC
GGCTGGGGCTCGTGCGCAACGGAACGTGTGAAGCTCGCGAGAAGGCACTG
CAAGCGGTGGCGGAGGCGGTGCACCGCTGCGAGCAGTTGAGCGCCAGACG
GCTGCGGAAGGTGGCGGTGGCGGCGCTGACGGAGACGGGCGTGAGTGTGG
GCGCGGACGGCGACGGCGCACCGAGCTTCGAGCGACTGATCGCGGGCGTG
GTGCGCGCCTTGGAATGGTCTGGATGA
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protein sequence of Gcaud7972.t1

>Gcaud7972.t1 ID=Gcaud7972.t1|Name=Gcaud7972.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=409bp
MIADFVDHTVVAHMKVRLCQPEEEALSDGDLQVNTDSSQFKHVKNVLERT
VSDRTLGKGNLSPTFVQSLDPIPARGGTHWFRVECARVIVDEAPNTNEER
TGTPRQLKVHTHAYYLRTRILRWIGATVTYQPCLHLEGSWEALCLPAGLK
SKLMSYVRVRVMLGANVGCSGLVVLYGPPGTGKTSVAHALAHESAVRGGG
EVALVHVHTQLLLSKYFGESSRNLAEMFDKVMRLARRSGLVFVVIDELES
IALTRGNHASGSEPGDAVRVVNSLLQSVDRIAACGNIIMIGTTNLRDKLD
EALVDRCDLLVRMDEPQGAARAALVVSAVDELVRLGLVRNGTCEAREKAL
QAVAEAVHRCEQLSARRLRKVAVAALTETGVSVGADGDGAPSFERLIAGV
VRALEWSG*
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mRNA from alignment at NODE_168_length_41232_cov_4.499891:5027..6253-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7972.t1 ID=Gcaud7972.t1|Name=Gcaud7972.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at NODE_168_length_41232_cov_4.499891:5027..6253- (Gracilaria caudata M_176_S67 male)
ATGATTGCCGACTTCGTCGACCACACCGTTGTGGCTCACATGAAGGTTCG
CCTCTGTCAGCCTGAAGAAGAGGCACTCAGTGACGGAGACCTACAGGTGA
ATACCGACAGCTCGCAGTTCAAACATGTCAAGAACGTTTTAGAGCGTACT
GTTTCCGACCGCACTTTAGGGAAAGGCAACCTGAGCCCAACGTTCGTGCA
AAGCTTGGATCCAATCCCAGCGCGTGGTGGTACTCATTGGTTTCGCGTAG
AGTGCGCTCGAGTGATAGTGGACGAGGCGCCCAACACCAACGAAGAACGC
ACGGGTACACCACGCCAACTGAAGGTACACACTCACGCTTACTACTTGCG
AACCCGAATCTTGCGATGGATTGGGGCCACGGTCACGTATCAACCTTGTC
TGCATCTTGAAGGCAGCTGGGAAGCGCTGTGCCTGCCAGCGGGTCTGAAG
AGCAAGCTGATGTCTTATGTGCGCGTGCGCGTTATGCTGGGCGCAAATGT
GGGCTGCAGCGGGCTGGTGGTGCTCTACGGACCGCCCGGCACCGGCAAGA
CGAGTGTGGCGCATGCGCTCGCTCACGAGAGCGCTGTGCGTGGAGGAGGC
GAAGTAGCATTGGTTCACGTGCATACACAACTGCTTCTGAGCAAATACTT
CGGAGAAAGCTCGAGAAACCTGGCCGAGATGTTCGACAAGGTTATGCGTT
TGGCGCGAAGAAGTGGCCTCGTGTTCGTTGTCATAGACGAGCTGGAGAGC
ATTGCGCTTACGCGCGGCAACCATGCAAGCGGGTCGGAGCCAGGAGACGC
AGTGCGCGTGGTGAACTCGCTGCTGCAGAGTGTGGACAGAATCGCTGCGT
GTGGAAACATCATCATGATCGGCACAACCAATCTGCGCGACAAACTGGAC
GAGGCATTGGTAGATCGGTGCGACCTGCTGGTGAGAATGGACGAGCCGCA
GGGGGCGGCGCGTGCTGCGCTGGTGGTGTCGGCGGTGGACGAGCTGGTAC
GGCTGGGGCTCGTGCGCAACGGAACGTGTGAAGCTCGCGAGAAGGCACTG
CAAGCGGTGGCGGAGGCGGTGCACCGCTGCGAGCAGTTGAGCGCCAGACG
GCTGCGGAAGGTGGCGGTGGCGGCGCTGACGGAGACGGGCGTGAGTGTGG
GCGCGGACGGCGACGGCGCACCGAGCTTCGAGCGACTGATCGCGGGCGTG
GTGCGCGCCTTGGAATGGTCTGGATGA
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Coding sequence (CDS) from alignment at NODE_168_length_41232_cov_4.499891:5027..6253-

>Gcaud7972.t1 ID=Gcaud7972.t1|Name=Gcaud7972.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1227bp|location=Sequence derived from alignment at NODE_168_length_41232_cov_4.499891:5027..6253- (Gracilaria caudata M_176_S67 male)
ATGATTGCCGACTTCGTCGACCACACCGTTGTGGCTCACATGAAGGTTCG
CCTCTGTCAGCCTGAAGAAGAGGCACTCAGTGACGGAGACCTACAGGTGA
ATACCGACAGCTCGCAGTTCAAACATGTCAAGAACGTTTTAGAGCGTACT
GTTTCCGACCGCACTTTAGGGAAAGGCAACCTGAGCCCAACGTTCGTGCA
AAGCTTGGATCCAATCCCAGCGCGTGGTGGTACTCATTGGTTTCGCGTAG
AGTGCGCTCGAGTGATAGTGGACGAGGCGCCCAACACCAACGAAGAACGC
ACGGGTACACCACGCCAACTGAAGGTACACACTCACGCTTACTACTTGCG
AACCCGAATCTTGCGATGGATTGGGGCCACGGTCACGTATCAACCTTGTC
TGCATCTTGAAGGCAGCTGGGAAGCGCTGTGCCTGCCAGCGGGTCTGAAG
AGCAAGCTGATGTCTTATGTGCGCGTGCGCGTTATGCTGGGCGCAAATGT
GGGCTGCAGCGGGCTGGTGGTGCTCTACGGACCGCCCGGCACCGGCAAGA
CGAGTGTGGCGCATGCGCTCGCTCACGAGAGCGCTGTGCGTGGAGGAGGC
GAAGTAGCATTGGTTCACGTGCATACACAACTGCTTCTGAGCAAATACTT
CGGAGAAAGCTCGAGAAACCTGGCCGAGATGTTCGACAAGGTTATGCGTT
TGGCGCGAAGAAGTGGCCTCGTGTTCGTTGTCATAGACGAGCTGGAGAGC
ATTGCGCTTACGCGCGGCAACCATGCAAGCGGGTCGGAGCCAGGAGACGC
AGTGCGCGTGGTGAACTCGCTGCTGCAGAGTGTGGACAGAATCGCTGCGT
GTGGAAACATCATCATGATCGGCACAACCAATCTGCGCGACAAACTGGAC
GAGGCATTGGTAGATCGGTGCGACCTGCTGGTGAGAATGGACGAGCCGCA
GGGGGCGGCGCGTGCTGCGCTGGTGGTGTCGGCGGTGGACGAGCTGGTAC
GGCTGGGGCTCGTGCGCAACGGAACGTGTGAAGCTCGCGAGAAGGCACTG
CAAGCGGTGGCGGAGGCGGTGCACCGCTGCGAGCAGTTGAGCGCCAGACG
GCTGCGGAAGGTGGCGGTGGCGGCGCTGACGGAGACGGGCGTGAGTGTGG
GCGCGGACGGCGACGGCGCACCGAGCTTCGAGCGACTGATCGCGGGCGTG
GTGCGCGCCTTGGAATGGTCTGGATGA
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