Gcaud7962.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7962.t1
Unique Name	Gcaud7962.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	583

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_344_length_29214_cov_4.056279	contig	NODE_344_length_29214_cov_4.056279:16851..18599 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8496.XP_006270037.1
Preferred name	RAD17
PFAMs	Rad17
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K06662
KEGG Pathway	ko04111,ko04113,map04111,map04113
GOs	GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010948,GO:0010972,GO:0019219,GO:0019220,GO:0019222,GO:0022402,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031974,GO:0031981,GO:0033314,GO:0033554,GO:0034641,GO:0034645,GO:0042325,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051174,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:1901360,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047,GO:2000112,GO:2000113
Evalue	2.16e-31
EggNOG OGs	COG0470@1\|root,KOG1970@2759\|Eukaryota,39UQ0@33154\|Opisthokonta,3BB7E@33208\|Metazoa,3D1E3@33213\|Bilateria,47Z27@7711\|Chordata,48X3B@7742\|Vertebrata
Description	protein-DNA loading ATPase activity
COG category	DL
BRITE	ko00000,ko00001,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7962	Gcaud7962	Gracilaria caudata M_176_S67 male	gene	NODE_344_length_29214_cov_4.056279 16851..18599 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7962.t1.start1	Gcaud7962.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_344_length_29214_cov_4.056279 16851..16853 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7962.t1.CDS1	Gcaud7962.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_344_length_29214_cov_4.056279 16851..18599 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7962.t1.exon1	Gcaud7962.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_344_length_29214_cov_4.056279 16851..18599 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7962.t1.stop1	Gcaud7962.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_344_length_29214_cov_4.056279 18597..18599 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7962.t1	Gcaud7962.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_344_length_29214_cov_4.056279 16851..18599 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_344_length_29214_cov_4.056279:16851..18599+
coding sequence from alignment at NODE_344_length_29214_cov_4.056279:16851..18599+

mRNA sequence

>Gcaud7962.t1 ID=Gcaud7962.t1|Name=Gcaud7962.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=583bp
MVLTSQSRKRQRESQSNEPKPDPIETVEDFEFRERDQSSDSSQLREVRHR
GAAGSTSPIELNGYDSPKQWCWADRYSDLHSQTGLAVSTKKFNEVVGWLG
LALEHLAPRFLVLSGPPGCGKASAVTAACEKLGCTIFKWDAPLTGSRGIS
TTLIEDFQSFVVGTRYQSLVSTSIDEQSGIESNPQSTKSESARGKQVLVI
DDLPLHISDLRDHRESVQQLFWNIARFAPYPTVLLLSDNDKGIHRLSNTM
LGSSLLDSKWVGSISIPPVTSSMMRKRLQQILAIESITIPHDQLELIISS
SNGDIRSALNNLELSIIRAKQTEPNHQAERSLRRKKRPRVKKESKNSLFM
ELDRDITLSTYHAVSKILNNKKGENGRSRYIAEQILEEARIDPSTFISFL
HHNYPDFFGNSDDVVPTLTCLSEADTLLPWRQEDDFRVDLRECAASIVTR
GFLYFNTQPNRNGWRPIHGPESHKIRRAGRNHVQYSKKLFTSRRHPHLST
RSEVCETLPYANKIGELSASSCFPSASNTKEPRGTVCGEARIETTNGTNC
SMDTIGNKTICDDAEDAEDLTDPIEDWDDGTW*

spliced messenger RNA

>Gcaud7962.t1 ID=Gcaud7962.t1|Name=Gcaud7962.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at NODE_344_length_29214_cov_4.056279:16851..18599+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCTGACTTCGCAAAGTAGGAAACGCCAGCGTGAATCTCAAAGCAA
CGAACCAAAACCGGACCCCATCGAGACAGTTGAGGACTTTGAATTTAGAG
AAAGGGACCAGTCGAGTGATTCATCTCAACTTCGGGAAGTGCGGCATCGA
GGTGCAGCAGGCTCTACATCTCCGATTGAACTGAACGGATATGACTCTCC
AAAGCAGTGGTGCTGGGCTGACCGATACTCCGATTTACACTCTCAAACCG
GGCTTGCGGTATCAACGAAGAAGTTCAATGAGGTCGTGGGGTGGCTAGGT
CTCGCCCTGGAGCACTTGGCGCCGAGGTTCCTTGTGCTAAGTGGACCGCC
TGGGTGTGGGAAAGCTTCTGCAGTTACCGCTGCGTGTGAAAAGCTAGGAT
GTACGATATTCAAATGGGACGCTCCGTTGACAGGCTCAAGAGGAATATCG
ACGACACTTATTGAAGACTTTCAGTCGTTTGTTGTTGGAACTCGCTACCA
AAGTCTTGTGTCCACCTCCATTGACGAACAGAGTGGCATTGAAAGCAACC
CACAATCCACGAAATCCGAAAGCGCAAGAGGCAAACAAGTTCTTGTAATT
GACGACTTACCACTGCACATATCCGATCTCAGAGACCATAGAGAATCTGT
TCAGCAGCTTTTCTGGAACATTGCCAGATTTGCACCGTATCCAACAGTCC
TTCTGCTTTCTGACAACGACAAGGGTATTCATCGTTTGTCAAACACGATG
TTAGGCTCCTCCCTGCTTGATTCGAAATGGGTTGGCTCTATTTCCATCCC
CCCTGTAACTTCTTCAATGATGAGGAAGCGCTTACAACAGATTTTGGCTA
TAGAAAGCATAACAATCCCTCATGATCAGCTTGAGTTGATCATTTCTTCA
AGCAATGGTGACATTCGATCCGCCCTCAACAATTTAGAGCTGTCAATCAT
TCGTGCAAAACAAACAGAACCTAACCACCAAGCTGAGCGGTCACTTCGAC
GAAAGAAGAGACCAAGAGTGAAAAAGGAAAGCAAAAACTCGCTGTTCATG
GAACTTGACAGGGATATAACGCTCAGCACGTATCACGCGGTTTCTAAGAT
ACTGAACAACAAGAAGGGTGAAAACGGTCGATCGCGATATATTGCGGAAC
AAATTCTTGAAGAAGCTCGGATTGACCCTTCCACTTTCATTTCATTCCTT
CATCACAACTATCCCGACTTTTTCGGTAATTCGGATGATGTCGTGCCCAC
CCTTACGTGCTTGTCGGAAGCAGATACTCTACTTCCGTGGCGTCAAGAAG
ATGACTTTCGAGTAGATTTGAGAGAATGCGCTGCGTCAATTGTCACTAGA
GGTTTTCTATACTTTAATACACAACCTAACAGAAACGGTTGGCGCCCTAT
ACACGGGCCAGAATCCCACAAGATAAGGAGGGCGGGGCGTAATCATGTAC
AATACTCAAAGAAGCTGTTCACAAGCCGTAGGCATCCACATCTATCCACG
CGATCCGAAGTGTGCGAAACTCTACCTTACGCCAACAAAATCGGGGAGTT
GTCCGCATCGAGTTGCTTCCCTTCCGCCTCGAACACGAAAGAACCGCGAG
GGACTGTTTGCGGCGAAGCTAGAATAGAAACCACCAATGGTACAAACTGC
AGCATGGACACCATTGGCAACAAAACAATTTGTGATGACGCGGAAGATGC
AGAAGACCTCACAGATCCTATTGAAGATTGGGATGATGGTACATGGTGA

protein sequence of Gcaud7962.t1

>Gcaud7962.t1 ID=Gcaud7962.t1|Name=Gcaud7962.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=583bp
MVLTSQSRKRQRESQSNEPKPDPIETVEDFEFRERDQSSDSSQLREVRHR
GAAGSTSPIELNGYDSPKQWCWADRYSDLHSQTGLAVSTKKFNEVVGWLG
LALEHLAPRFLVLSGPPGCGKASAVTAACEKLGCTIFKWDAPLTGSRGIS
TTLIEDFQSFVVGTRYQSLVSTSIDEQSGIESNPQSTKSESARGKQVLVI
DDLPLHISDLRDHRESVQQLFWNIARFAPYPTVLLLSDNDKGIHRLSNTM
LGSSLLDSKWVGSISIPPVTSSMMRKRLQQILAIESITIPHDQLELIISS
SNGDIRSALNNLELSIIRAKQTEPNHQAERSLRRKKRPRVKKESKNSLFM
ELDRDITLSTYHAVSKILNNKKGENGRSRYIAEQILEEARIDPSTFISFL
HHNYPDFFGNSDDVVPTLTCLSEADTLLPWRQEDDFRVDLRECAASIVTR
GFLYFNTQPNRNGWRPIHGPESHKIRRAGRNHVQYSKKLFTSRRHPHLST
RSEVCETLPYANKIGELSASSCFPSASNTKEPRGTVCGEARIETTNGTNC
SMDTIGNKTICDDAEDAEDLTDPIEDWDDGTW*

mRNA from alignment at NODE_344_length_29214_cov_4.056279:16851..18599+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7962.t1 ID=Gcaud7962.t1|Name=Gcaud7962.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1749bp|location=Sequence derived from alignment at NODE_344_length_29214_cov_4.056279:16851..18599+ (Gracilaria caudata M_176_S67 male)
ATGGTTCTGACTTCGCAAAGTAGGAAACGCCAGCGTGAATCTCAAAGCAA
CGAACCAAAACCGGACCCCATCGAGACAGTTGAGGACTTTGAATTTAGAG
AAAGGGACCAGTCGAGTGATTCATCTCAACTTCGGGAAGTGCGGCATCGA
GGTGCAGCAGGCTCTACATCTCCGATTGAACTGAACGGATATGACTCTCC
AAAGCAGTGGTGCTGGGCTGACCGATACTCCGATTTACACTCTCAAACCG
GGCTTGCGGTATCAACGAAGAAGTTCAATGAGGTCGTGGGGTGGCTAGGT
CTCGCCCTGGAGCACTTGGCGCCGAGGTTCCTTGTGCTAAGTGGACCGCC
TGGGTGTGGGAAAGCTTCTGCAGTTACCGCTGCGTGTGAAAAGCTAGGAT
GTACGATATTCAAATGGGACGCTCCGTTGACAGGCTCAAGAGGAATATCG
ACGACACTTATTGAAGACTTTCAGTCGTTTGTTGTTGGAACTCGCTACCA
AAGTCTTGTGTCCACCTCCATTGACGAACAGAGTGGCATTGAAAGCAACC
CACAATCCACGAAATCCGAAAGCGCAAGAGGCAAACAAGTTCTTGTAATT
GACGACTTACCACTGCACATATCCGATCTCAGAGACCATAGAGAATCTGT
TCAGCAGCTTTTCTGGAACATTGCCAGATTTGCACCGTATCCAACAGTCC
TTCTGCTTTCTGACAACGACAAGGGTATTCATCGTTTGTCAAACACGATG
TTAGGCTCCTCCCTGCTTGATTCGAAATGGGTTGGCTCTATTTCCATCCC
CCCTGTAACTTCTTCAATGATGAGGAAGCGCTTACAACAGATTTTGGCTA
TAGAAAGCATAACAATCCCTCATGATCAGCTTGAGTTGATCATTTCTTCA
AGCAATGGTGACATTCGATCCGCCCTCAACAATTTAGAGCTGTCAATCAT
TCGTGCAAAACAAACAGAACCTAACCACCAAGCTGAGCGGTCACTTCGAC
GAAAGAAGAGACCAAGAGTGAAAAAGGAAAGCAAAAACTCGCTGTTCATG
GAACTTGACAGGGATATAACGCTCAGCACGTATCACGCGGTTTCTAAGAT
ACTGAACAACAAGAAGGGTGAAAACGGTCGATCGCGATATATTGCGGAAC
AAATTCTTGAAGAAGCTCGGATTGACCCTTCCACTTTCATTTCATTCCTT
CATCACAACTATCCCGACTTTTTCGGTAATTCGGATGATGTCGTGCCCAC
CCTTACGTGCTTGTCGGAAGCAGATACTCTACTTCCGTGGCGTCAAGAAG
ATGACTTTCGAGTAGATTTGAGAGAATGCGCTGCGTCAATTGTCACTAGA
GGTTTTCTATACTTTAATACACAACCTAACAGAAACGGTTGGCGCCCTAT
ACACGGGCCAGAATCCCACAAGATAAGGAGGGCGGGGCGTAATCATGTAC
AATACTCAAAGAAGCTGTTCACAAGCCGTAGGCATCCACATCTATCCACG
CGATCCGAAGTGTGCGAAACTCTACCTTACGCCAACAAAATCGGGGAGTT
GTCCGCATCGAGTTGCTTCCCTTCCGCCTCGAACACGAAAGAACCGCGAG
GGACTGTTTGCGGCGAAGCTAGAATAGAAACCACCAATGGTACAAACTGC
AGCATGGACACCATTGGCAACAAAACAATTTGTGATGACGCGGAAGATGC
AGAAGACCTCACAGATCCTATTGAAGATTGGGATGATGGTACATGGTGA

Coding sequence (CDS) from alignment at NODE_344_length_29214_cov_4.056279:16851..18599+

>Gcaud7962.t1 ID=Gcaud7962.t1|Name=Gcaud7962.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1749bp|location=Sequence derived from alignment at NODE_344_length_29214_cov_4.056279:16851..18599+ (Gracilaria caudata M_176_S67 male)
ATGGTTCTGACTTCGCAAAGTAGGAAACGCCAGCGTGAATCTCAAAGCAA
CGAACCAAAACCGGACCCCATCGAGACAGTTGAGGACTTTGAATTTAGAG
AAAGGGACCAGTCGAGTGATTCATCTCAACTTCGGGAAGTGCGGCATCGA
GGTGCAGCAGGCTCTACATCTCCGATTGAACTGAACGGATATGACTCTCC
AAAGCAGTGGTGCTGGGCTGACCGATACTCCGATTTACACTCTCAAACCG
GGCTTGCGGTATCAACGAAGAAGTTCAATGAGGTCGTGGGGTGGCTAGGT
CTCGCCCTGGAGCACTTGGCGCCGAGGTTCCTTGTGCTAAGTGGACCGCC
TGGGTGTGGGAAAGCTTCTGCAGTTACCGCTGCGTGTGAAAAGCTAGGAT
GTACGATATTCAAATGGGACGCTCCGTTGACAGGCTCAAGAGGAATATCG
ACGACACTTATTGAAGACTTTCAGTCGTTTGTTGTTGGAACTCGCTACCA
AAGTCTTGTGTCCACCTCCATTGACGAACAGAGTGGCATTGAAAGCAACC
CACAATCCACGAAATCCGAAAGCGCAAGAGGCAAACAAGTTCTTGTAATT
GACGACTTACCACTGCACATATCCGATCTCAGAGACCATAGAGAATCTGT
TCAGCAGCTTTTCTGGAACATTGCCAGATTTGCACCGTATCCAACAGTCC
TTCTGCTTTCTGACAACGACAAGGGTATTCATCGTTTGTCAAACACGATG
TTAGGCTCCTCCCTGCTTGATTCGAAATGGGTTGGCTCTATTTCCATCCC
CCCTGTAACTTCTTCAATGATGAGGAAGCGCTTACAACAGATTTTGGCTA
TAGAAAGCATAACAATCCCTCATGATCAGCTTGAGTTGATCATTTCTTCA
AGCAATGGTGACATTCGATCCGCCCTCAACAATTTAGAGCTGTCAATCAT
TCGTGCAAAACAAACAGAACCTAACCACCAAGCTGAGCGGTCACTTCGAC
GAAAGAAGAGACCAAGAGTGAAAAAGGAAAGCAAAAACTCGCTGTTCATG
GAACTTGACAGGGATATAACGCTCAGCACGTATCACGCGGTTTCTAAGAT
ACTGAACAACAAGAAGGGTGAAAACGGTCGATCGCGATATATTGCGGAAC
AAATTCTTGAAGAAGCTCGGATTGACCCTTCCACTTTCATTTCATTCCTT
CATCACAACTATCCCGACTTTTTCGGTAATTCGGATGATGTCGTGCCCAC
CCTTACGTGCTTGTCGGAAGCAGATACTCTACTTCCGTGGCGTCAAGAAG
ATGACTTTCGAGTAGATTTGAGAGAATGCGCTGCGTCAATTGTCACTAGA
GGTTTTCTATACTTTAATACACAACCTAACAGAAACGGTTGGCGCCCTAT
ACACGGGCCAGAATCCCACAAGATAAGGAGGGCGGGGCGTAATCATGTAC
AATACTCAAAGAAGCTGTTCACAAGCCGTAGGCATCCACATCTATCCACG
CGATCCGAAGTGTGCGAAACTCTACCTTACGCCAACAAAATCGGGGAGTT
GTCCGCATCGAGTTGCTTCCCTTCCGCCTCGAACACGAAAGAACCGCGAG
GGACTGTTTGCGGCGAAGCTAGAATAGAAACCACCAATGGTACAAACTGC
AGCATGGACACCATTGGCAACAAAACAATTTGTGATGACGCGGAAGATGC
AGAAGACCTCACAGATCCTATTGAAGATTGGGATGATGGTACATGGTGA