Gcaud7953.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7953.t1
Unique NameGcaud7953.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length43
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6473_length_1169_cov_5.753247contigNODE_6473_length_1169_cov_5.753247:538..790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7953Gcaud7953Gracilaria caudata M_176_S67 malegeneNODE_6473_length_1169_cov_5.753247 538..790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7953.t1Gcaud7953.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6473_length_1169_cov_5.753247 538..790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7953.t1.CDS1Gcaud7953.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6473_length_1169_cov_5.753247 538..651 +
Gcaud7953.t1.CDS2Gcaud7953.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_6473_length_1169_cov_5.753247 776..790 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7953.t1.exon1Gcaud7953.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6473_length_1169_cov_5.753247 538..651 +
Gcaud7953.t1.exon2Gcaud7953.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_6473_length_1169_cov_5.753247 776..790 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7953.t1.intron1Gcaud7953.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_6473_length_1169_cov_5.753247 652..775 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7953.t1.stop1Gcaud7953.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_6473_length_1169_cov_5.753247 788..790 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7953.t1 ID=Gcaud7953.t1|Name=Gcaud7953.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=43bp
DIKFAIWRRELRKPAMLNAVALDLRGGVHSVQHRVVGEVPLL*
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spliced messenger RNA

>Gcaud7953.t1 ID=Gcaud7953.t1|Name=Gcaud7953.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=129bp|location=Sequence derived from alignment at NODE_6473_length_1169_cov_5.753247:538..790+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GATATCAAATTCGCGATTTGGAGACGAGAACTGCGAAAGCCGGCGATGCT
AAACGCAGTGGCTCTTGACTTGCGAGGTGGAGTTCATTCAGTTCAGCACC
GCGTTGTTGGAGAAGTGCCCCTACTCTAG
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protein sequence of Gcaud7953.t1

>Gcaud7953.t1 ID=Gcaud7953.t1|Name=Gcaud7953.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=43bp
DIKFAIWRRELRKPAMLNAVALDLRGGVHSVQHRVVGEVPLL*
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mRNA from alignment at NODE_6473_length_1169_cov_5.753247:538..790+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7953.t1 ID=Gcaud7953.t1|Name=Gcaud7953.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=253bp|location=Sequence derived from alignment at NODE_6473_length_1169_cov_5.753247:538..790+ (Gracilaria caudata M_176_S67 male)
GATATCAAATTCGCGATTTGGAGACGAGAACTGCGAAAGCCGGCGATGCT
AAACGCAGTGGCTCTTGACTTGCGAGGTGGAGTTCATTCAGTTCAGCACC
GCGTTGTTGGAGAAGTACGGAAAAGGACGGCTCGGGGGGGGGGAAAGATT
CGAAAGCCATCTACAAGCTTCAAGTCGCCTTCCTTGATAGGCCCTCTCAG
TTTCACTCACCTTTACCATCTTTCGGAATAATGTTCAGGTGCCCCTACTC
TAG
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Coding sequence (CDS) from alignment at NODE_6473_length_1169_cov_5.753247:538..790+

>Gcaud7953.t1 ID=Gcaud7953.t1|Name=Gcaud7953.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=129bp|location=Sequence derived from alignment at NODE_6473_length_1169_cov_5.753247:538..790+ (Gracilaria caudata M_176_S67 male)
GATATCAAATTCGCGATTTGGAGACGAGAACTGCGAAAGCCGGCGATGCT
AAACGCAGTGGCTCTTGACTTGCGAGGTGGAGTTCATTCAGTTCAGCACC
GCGTTGTTGGAGAAGTGCCCCTACTCTAG
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