Gcaud7940.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7940.t1
Unique Name	Gcaud7940.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	228

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_7825_length_847_cov_4.973545	contig	NODE_7825_length_847_cov_4.973545:2..802 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705170.1
PFAMs	AAA_5,VWA,zf-RVT
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14572
KEGG Pathway	ko03008,map03008
Evalue	2.78e-21
EggNOG OGs	COG5271@1\|root,KOG1808@2759\|Eukaryota
Description	Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
COG category	M
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7940	Gcaud7940	Gracilaria caudata M_176_S67 male	gene	NODE_7825_length_847_cov_4.973545 2..802 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7940.t1	Gcaud7940.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_7825_length_847_cov_4.973545 2..802 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7940.t1.CDS1	Gcaud7940.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_7825_length_847_cov_4.973545 2..653 +
Gcaud7940.t1.CDS2	Gcaud7940.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_7825_length_847_cov_4.973545 773..802 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7940.t1.exon1	Gcaud7940.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_7825_length_847_cov_4.973545 2..653 +
Gcaud7940.t1.exon2	Gcaud7940.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_7825_length_847_cov_4.973545 773..802 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7940.t1.intron1	Gcaud7940.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_7825_length_847_cov_4.973545 654..772 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7940.t1.stop1	Gcaud7940.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_7825_length_847_cov_4.973545 800..802 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_7825_length_847_cov_4.973545:2..802+
coding sequence from alignment at NODE_7825_length_847_cov_4.973545:2..802+

mRNA sequence

>Gcaud7940.t1 ID=Gcaud7940.t1|Name=Gcaud7940.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=228bp
XVSQAPGFFLFGAMNPPTDVGKRYLPEVLRARFAEIYVGDMIEREDVLDL
VMTRLFPGQGSEKAVGFSKNEGQLASDITSFYIESSSLAREGHIEDNIGR
PTKYSIRTLARMLDFAKGVSSLVAGGPHAIRRILYEGALLAFCTALPATS
RAKVMRLASHFILRFDDRGKLPLPEIANMVPLNLRNRGRLQMVEGFPLEN
SISSSNVARRSPFVVSNTPDGKQIDSN*

spliced messenger RNA

>Gcaud7940.t1 ID=Gcaud7940.t1|Name=Gcaud7940.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=682bp|location=Sequence derived from alignment at NODE_7825_length_847_cov_4.973545:2..802+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
AGTCTCCCAAGCTCCTGGATTTTTCCTTTTCGGTGCAATGAATCCACCAA
CCGATGTTGGAAAGCGGTATCTGCCTGAAGTTTTGCGTGCCCGTTTTGCT
GAGATATATGTTGGGGATATGATAGAGAGGGAAGACGTTTTAGACCTGGT
CATGACACGACTTTTTCCAGGGCAAGGATCTGAAAAAGCAGTTGGCTTCT
CGAAGAATGAGGGACAACTTGCGAGTGATATTACGTCCTTCTATATTGAG
AGTTCCTCTCTGGCGAGAGAGGGCCATATCGAAGATAACATTGGCAGACC
TACCAAATATAGCATCCGAACACTTGCAAGGATGCTTGATTTTGCCAAAG
GTGTGAGTAGTCTTGTTGCTGGAGGTCCGCATGCCATCAGACGTATTCTT
TACGAAGGCGCTCTATTGGCTTTTTGTACAGCTTTACCAGCCACATCTCG
TGCAAAAGTGATGCGTTTGGCAAGTCATTTCATTCTGAGATTTGACGACC
GAGGAAAACTACCCTTGCCAGAGATAGCCAATATGGTTCCATTAAATTTG
AGGAACAGGGGTCGCCTGCAGATGGTCGAGGGCTTCCCTCTCGAAAATAG
CATCAGCTCCTCTAACGTGGCGCGTAGATCTCCGTTTGTGGTGTCGAATA
CCCCTGACGGGAAACAGATTGATTCGAATTAA

protein sequence of Gcaud7940.t1

>Gcaud7940.t1 ID=Gcaud7940.t1|Name=Gcaud7940.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=228bp
XVSQAPGFFLFGAMNPPTDVGKRYLPEVLRARFAEIYVGDMIEREDVLDL
VMTRLFPGQGSEKAVGFSKNEGQLASDITSFYIESSSLAREGHIEDNIGR
PTKYSIRTLARMLDFAKGVSSLVAGGPHAIRRILYEGALLAFCTALPATS
RAKVMRLASHFILRFDDRGKLPLPEIANMVPLNLRNRGRLQMVEGFPLEN
SISSSNVARRSPFVVSNTPDGKQIDSN*

mRNA from alignment at NODE_7825_length_847_cov_4.973545:2..802+

Legend: polypeptideCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7940.t1 ID=Gcaud7940.t1|Name=Gcaud7940.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_7825_length_847_cov_4.973545:2..802+ (Gracilaria caudata M_176_S67 male)
AGTCTCCCAAGCTCCTGGATTTTTCCTTTTCGGTGCAATGAATCCACCAA
CCGATGTTGGAAAGCGGTATCTGCCTGAAGTTTTGCGTGCCCGTTTTGCT
GAGATATATGTTGGGGATATGATAGAGAGGGAAGACGTTTTAGACCTGGT
CATGACACGACTTTTTCCAGGGCAAGGATCTGAAAAAGCAGTTGGCTTCT
CGAAGAATGAGGGACAACTTGCGAGTGATATTACGTCCTTCTATATTGAG
AGTTCCTCTCTGGCGAGAGAGGGCCATATCGAAGATAACATTGGCAGACC
TACCAAATATAGCATCCGAACACTTGCAAGGATGCTTGATTTTGCCAAAG
GTGTGAGTAGTCTTGTTGCTGGAGGTCCGCATGCCATCAGACGTATTCTT
TACGAAGGCGCTCTATTGGCTTTTTGTACAGCTTTACCAGCCACATCTCG
TGCAAAAGTGATGCGTTTGGCAAGTCATTTCATTCTGAGATTTGACGACC
GAGGAAAACTACCCTTGCCAGAGATAGCCAATATGGTTCCATTAAATTTG
AGGAACAGGGGTCGCCTGCAGATGGTCGAGGGCTTCCCTCTCGAAAATAG
CATCAGCTCCTCTAACGTGGCGCGTAGATCTCCGTTTGTGGTGTCGAATA
CCGTAAGTTCAACGTTGAAAGATGTGTGTCGAGCGTTAATCGTTGGTGCT
CCTCAACTACCCATCCTACTACAAGGACCAACGGCTGCAGGCAAAACTTC
GATGGTTGCGTATCTAGCCAGCCTGACGGGAAACAGATTGATTCGAATTA
A

Coding sequence (CDS) from alignment at NODE_7825_length_847_cov_4.973545:2..802+

>Gcaud7940.t1 ID=Gcaud7940.t1|Name=Gcaud7940.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=682bp|location=Sequence derived from alignment at NODE_7825_length_847_cov_4.973545:2..802+ (Gracilaria caudata M_176_S67 male)
AGTCTCCCAAGCTCCTGGATTTTTCCTTTTCGGTGCAATGAATCCACCAA
CCGATGTTGGAAAGCGGTATCTGCCTGAAGTTTTGCGTGCCCGTTTTGCT
GAGATATATGTTGGGGATATGATAGAGAGGGAAGACGTTTTAGACCTGGT
CATGACACGACTTTTTCCAGGGCAAGGATCTGAAAAAGCAGTTGGCTTCT
CGAAGAATGAGGGACAACTTGCGAGTGATATTACGTCCTTCTATATTGAG
AGTTCCTCTCTGGCGAGAGAGGGCCATATCGAAGATAACATTGGCAGACC
TACCAAATATAGCATCCGAACACTTGCAAGGATGCTTGATTTTGCCAAAG
GTGTGAGTAGTCTTGTTGCTGGAGGTCCGCATGCCATCAGACGTATTCTT
TACGAAGGCGCTCTATTGGCTTTTTGTACAGCTTTACCAGCCACATCTCG
TGCAAAAGTGATGCGTTTGGCAAGTCATTTCATTCTGAGATTTGACGACC
GAGGAAAACTACCCTTGCCAGAGATAGCCAATATGGTTCCATTAAATTTG
AGGAACAGGGGTCGCCTGCAGATGGTCGAGGGCTTCCCTCTCGAAAATAG
CATCAGCTCCTCTAACGTGGCGCGTAGATCTCCGTTTGTGGTGTCGAATA
CCCCTGACGGGAAACAGATTGATTCGAATTAA