Gcaud7923.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7923.t1
Unique NameGcaud7923.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_314_length_30704_cov_3.921177contigNODE_314_length_30704_cov_3.921177:21582..22628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP158CT
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00182
KEGG koko:K00010
KEGG ReactionR01183,R09951
KEGG Pathwayko00521,ko00562,ko01100,ko01120,ko01130,map00521,map00562,map01100,map01120,map01130
Evalue4.46e-89
EggNOG OGsCOG0673@1|root,KOG2741@2759|Eukaryota
EC1.1.1.18,1.1.1.369
DescriptionD-xylose 1-dehydrogenase (NADP ) activity
COG categoryV
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7923Gcaud7923Gracilaria caudata M_176_S67 malegeneNODE_314_length_30704_cov_3.921177 21582..22628 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7923.t1.stop1Gcaud7923.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_314_length_30704_cov_3.921177 21582..21584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7923.t1.CDS1Gcaud7923.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_314_length_30704_cov_3.921177 21582..22628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7923.t1.exon1Gcaud7923.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_314_length_30704_cov_3.921177 21582..22628 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7923.t1.start1Gcaud7923.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_314_length_30704_cov_3.921177 22626..22628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7923.t1Gcaud7923.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_314_length_30704_cov_3.921177 21582..22628 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7923.t1 ID=Gcaud7923.t1|Name=Gcaud7923.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=349bp
MDKPLIVVLGLGEMGFVHAANLSKLRQIRLGIACRRPQVLSTAAKKLCAD
KTFDSYDAAISHAETVAVVIATPPATHPQLIEQAASAGKHIFCEKPLGFD
TASIQRSIAHVQKARIRFMTGFMRRWDSAYAAARKTVDDGDLGDTLVLKC
TSGDPEYPEKYHRGGAKHSMLKDLAVHDIDLARWLTRSEVKSAYALTDAL
SYDTLRQYEDSDVAICVLEMESGAKVMIHLSRALWYGYNVTSELVCKKGS
LRIGALRTVDIELMKDGKTCERIAWDFRQRFKEAFESEMSAFGALVCAQS
ESEAEQMVKQNSSYAGCWDGFCATAVAEALVRSSQNGVAEKVLYGDAA*
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spliced messenger RNA

>Gcaud7923.t1 ID=Gcaud7923.t1|Name=Gcaud7923.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_314_length_30704_cov_3.921177:21582..22628- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAACCGCTGATTGTGGTGCTAGGGCTCGGCGAAATGGGCTTCGT
GCACGCCGCCAATCTGTCCAAGCTCCGCCAAATAAGACTCGGCATCGCGT
GTCGTCGCCCGCAAGTGCTGAGCACCGCCGCCAAAAAGCTGTGCGCCGAC
AAGACCTTCGACTCCTACGACGCGGCCATTTCGCACGCCGAAACGGTTGC
AGTGGTGATTGCCACGCCTCCCGCCACGCACCCGCAGCTCATCGAGCAGG
CCGCAAGCGCCGGCAAACACATCTTCTGCGAGAAGCCGCTCGGATTCGAC
ACCGCCTCCATTCAACGCAGCATTGCGCACGTGCAAAAAGCGCGCATTCG
TTTCATGACGGGCTTCATGCGCCGCTGGGACAGCGCGTACGCCGCGGCGA
GAAAGACGGTGGACGACGGCGATCTGGGCGACACGCTCGTGCTCAAGTGC
ACCAGCGGCGATCCAGAGTACCCCGAAAAGTACCACCGCGGCGGTGCAAA
ACACTCCATGCTGAAGGATCTGGCCGTGCACGACATTGACCTGGCGCGCT
GGTTGACGCGCAGCGAGGTGAAGAGCGCGTACGCGCTGACGGATGCGTTG
AGCTACGACACATTGCGCCAGTATGAGGACTCGGACGTGGCGATTTGTGT
GCTGGAGATGGAGAGCGGCGCAAAGGTGATGATTCATTTGAGCAGGGCGC
TTTGGTACGGGTACAATGTGACGTCGGAACTGGTGTGCAAGAAGGGCTCG
CTTCGCATCGGCGCGTTGAGAACGGTGGACATTGAGCTGATGAAGGACGG
CAAAACATGCGAGCGCATTGCGTGGGACTTTAGACAGCGCTTCAAGGAGG
CGTTTGAGAGCGAAATGAGCGCGTTTGGCGCGCTGGTGTGCGCGCAAAGC
GAGAGCGAGGCGGAACAAATGGTGAAACAAAACAGCAGTTACGCCGGCTG
TTGGGACGGCTTTTGCGCCACTGCGGTGGCAGAGGCGCTTGTACGTAGCT
CCCAAAACGGCGTTGCGGAGAAAGTTTTGTACGGAGACGCGGCGTGA
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protein sequence of Gcaud7923.t1

>Gcaud7923.t1 ID=Gcaud7923.t1|Name=Gcaud7923.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=349bp
MDKPLIVVLGLGEMGFVHAANLSKLRQIRLGIACRRPQVLSTAAKKLCAD
KTFDSYDAAISHAETVAVVIATPPATHPQLIEQAASAGKHIFCEKPLGFD
TASIQRSIAHVQKARIRFMTGFMRRWDSAYAAARKTVDDGDLGDTLVLKC
TSGDPEYPEKYHRGGAKHSMLKDLAVHDIDLARWLTRSEVKSAYALTDAL
SYDTLRQYEDSDVAICVLEMESGAKVMIHLSRALWYGYNVTSELVCKKGS
LRIGALRTVDIELMKDGKTCERIAWDFRQRFKEAFESEMSAFGALVCAQS
ESEAEQMVKQNSSYAGCWDGFCATAVAEALVRSSQNGVAEKVLYGDAA*
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mRNA from alignment at NODE_314_length_30704_cov_3.921177:21582..22628-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7923.t1 ID=Gcaud7923.t1|Name=Gcaud7923.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_314_length_30704_cov_3.921177:21582..22628- (Gracilaria caudata M_176_S67 male)
ATGGACAAACCGCTGATTGTGGTGCTAGGGCTCGGCGAAATGGGCTTCGT
GCACGCCGCCAATCTGTCCAAGCTCCGCCAAATAAGACTCGGCATCGCGT
GTCGTCGCCCGCAAGTGCTGAGCACCGCCGCCAAAAAGCTGTGCGCCGAC
AAGACCTTCGACTCCTACGACGCGGCCATTTCGCACGCCGAAACGGTTGC
AGTGGTGATTGCCACGCCTCCCGCCACGCACCCGCAGCTCATCGAGCAGG
CCGCAAGCGCCGGCAAACACATCTTCTGCGAGAAGCCGCTCGGATTCGAC
ACCGCCTCCATTCAACGCAGCATTGCGCACGTGCAAAAAGCGCGCATTCG
TTTCATGACGGGCTTCATGCGCCGCTGGGACAGCGCGTACGCCGCGGCGA
GAAAGACGGTGGACGACGGCGATCTGGGCGACACGCTCGTGCTCAAGTGC
ACCAGCGGCGATCCAGAGTACCCCGAAAAGTACCACCGCGGCGGTGCAAA
ACACTCCATGCTGAAGGATCTGGCCGTGCACGACATTGACCTGGCGCGCT
GGTTGACGCGCAGCGAGGTGAAGAGCGCGTACGCGCTGACGGATGCGTTG
AGCTACGACACATTGCGCCAGTATGAGGACTCGGACGTGGCGATTTGTGT
GCTGGAGATGGAGAGCGGCGCAAAGGTGATGATTCATTTGAGCAGGGCGC
TTTGGTACGGGTACAATGTGACGTCGGAACTGGTGTGCAAGAAGGGCTCG
CTTCGCATCGGCGCGTTGAGAACGGTGGACATTGAGCTGATGAAGGACGG
CAAAACATGCGAGCGCATTGCGTGGGACTTTAGACAGCGCTTCAAGGAGG
CGTTTGAGAGCGAAATGAGCGCGTTTGGCGCGCTGGTGTGCGCGCAAAGC
GAGAGCGAGGCGGAACAAATGGTGAAACAAAACAGCAGTTACGCCGGCTG
TTGGGACGGCTTTTGCGCCACTGCGGTGGCAGAGGCGCTTGTACGTAGCT
CCCAAAACGGCGTTGCGGAGAAAGTTTTGTACGGAGACGCGGCGTGA
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Coding sequence (CDS) from alignment at NODE_314_length_30704_cov_3.921177:21582..22628-

>Gcaud7923.t1 ID=Gcaud7923.t1|Name=Gcaud7923.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1047bp|location=Sequence derived from alignment at NODE_314_length_30704_cov_3.921177:21582..22628- (Gracilaria caudata M_176_S67 male)
ATGGACAAACCGCTGATTGTGGTGCTAGGGCTCGGCGAAATGGGCTTCGT
GCACGCCGCCAATCTGTCCAAGCTCCGCCAAATAAGACTCGGCATCGCGT
GTCGTCGCCCGCAAGTGCTGAGCACCGCCGCCAAAAAGCTGTGCGCCGAC
AAGACCTTCGACTCCTACGACGCGGCCATTTCGCACGCCGAAACGGTTGC
AGTGGTGATTGCCACGCCTCCCGCCACGCACCCGCAGCTCATCGAGCAGG
CCGCAAGCGCCGGCAAACACATCTTCTGCGAGAAGCCGCTCGGATTCGAC
ACCGCCTCCATTCAACGCAGCATTGCGCACGTGCAAAAAGCGCGCATTCG
TTTCATGACGGGCTTCATGCGCCGCTGGGACAGCGCGTACGCCGCGGCGA
GAAAGACGGTGGACGACGGCGATCTGGGCGACACGCTCGTGCTCAAGTGC
ACCAGCGGCGATCCAGAGTACCCCGAAAAGTACCACCGCGGCGGTGCAAA
ACACTCCATGCTGAAGGATCTGGCCGTGCACGACATTGACCTGGCGCGCT
GGTTGACGCGCAGCGAGGTGAAGAGCGCGTACGCGCTGACGGATGCGTTG
AGCTACGACACATTGCGCCAGTATGAGGACTCGGACGTGGCGATTTGTGT
GCTGGAGATGGAGAGCGGCGCAAAGGTGATGATTCATTTGAGCAGGGCGC
TTTGGTACGGGTACAATGTGACGTCGGAACTGGTGTGCAAGAAGGGCTCG
CTTCGCATCGGCGCGTTGAGAACGGTGGACATTGAGCTGATGAAGGACGG
CAAAACATGCGAGCGCATTGCGTGGGACTTTAGACAGCGCTTCAAGGAGG
CGTTTGAGAGCGAAATGAGCGCGTTTGGCGCGCTGGTGTGCGCGCAAAGC
GAGAGCGAGGCGGAACAAATGGTGAAACAAAACAGCAGTTACGCCGGCTG
TTGGGACGGCTTTTGCGCCACTGCGGTGGCAGAGGCGCTTGTACGTAGCT
CCCAAAACGGCGTTGCGGAGAAAGTTTTGTACGGAGACGCGGCGTGA
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