Gcaud792.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud792.t1
Unique Name	Gcaud792.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	473

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_330_length_29762_cov_4.444879	contig	NODE_330_length_29762_cov_4.444879:24816..26234 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173028.ANKO01000174_gene2669
PFAMs	Amidohydro_2
Max annot lvl	1117\|Cyanobacteria
Evalue	2.57e-71
EggNOG OGs	COG2159@1\|root,COG2159@2\|Bacteria,1G2HJ@1117\|Cyanobacteria,1H9XN@1150\|Oscillatoriales
Description	Amidohydrolase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud792	Gcaud792	Gracilaria caudata M_176_S67 male	gene	NODE_330_length_29762_cov_4.444879 24816..26234 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud792.t1.start1	Gcaud792.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_330_length_29762_cov_4.444879 24816..24818 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud792.t1.CDS1	Gcaud792.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_330_length_29762_cov_4.444879 24816..26234 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud792.t1.exon1	Gcaud792.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_330_length_29762_cov_4.444879 24816..26234 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud792.t1.stop1	Gcaud792.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_330_length_29762_cov_4.444879 26232..26234 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud792.t1	Gcaud792.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_330_length_29762_cov_4.444879 24816..26234 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_330_length_29762_cov_4.444879:24816..26234+
coding sequence from alignment at NODE_330_length_29762_cov_4.444879:24816..26234+

mRNA sequence

>Gcaud792.t1 ID=Gcaud792.t1|Name=Gcaud792.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=473bp
MDLSSHSVTQTPTYSELEAVADATLLIDNHAHPLSRATPRPLSSMLTEAP
TSSFDPYPACATLAYNRAMRDISALLAHETERSRAFQETPTTAAPSHVLA
SSSPETPTPVTPSENSTADDEDHAFDGAAPVYNALEQRRAALGVARLASR
CFSAAGIAAVLVDDGLNMPDMIPLAEMSTFGVPLVRRVLRLEVEAESVIR
ELVMENENGVWRKVERPSSPEKRPRTTVRAEMFLQRLRARLSPLQEGVVA
FKSIAAYRSDLNIHLDCSDEELDEKLQETANTMDDNVTDPLSLRLSNKQI
IGRVVRMALQVADQHEIPIQFHCGFGDTDLRLEEANPLLLKPLLESFPNV
NVVLLHAAWPFVREAAYLTSVFRNCFLDFGLAIPLLSVRGMFRALDSAME
VAPVSRLLYSSDAHVVPDMYYLGARWGRRVVAAAISANVQAGDLTVSEGK
AAVRKILADNAISLYRLPVQSS*

spliced messenger RNA

>Gcaud792.t1 ID=Gcaud792.t1|Name=Gcaud792.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1419bp|location=Sequence derived from alignment at NODE_330_length_29762_cov_4.444879:24816..26234+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTCTCGTCGCACTCCGTAACGCAGACACCGACTTATTCGGAACT
TGAAGCAGTTGCTGATGCCACGCTCTTAATTGACAACCATGCACATCCTT
TGAGCCGAGCAACGCCACGTCCGTTGTCCAGCATGTTGACGGAGGCTCCT
ACGAGCTCTTTCGATCCGTATCCCGCCTGTGCGACGTTGGCGTACAACCG
CGCGATGCGCGACATATCGGCTCTTTTGGCCCATGAAACTGAACGAAGTC
GAGCGTTTCAAGAGACCCCAACAACCGCTGCACCGTCGCACGTGCTCGCA
TCATCCTCTCCAGAAACGCCAACACCTGTGACTCCATCTGAAAACAGCAC
GGCTGATGACGAAGATCACGCGTTTGACGGCGCGGCACCAGTGTACAATG
CTTTGGAACAGCGTCGAGCTGCGCTTGGCGTGGCACGTCTCGCCAGCAGA
TGTTTTTCAGCAGCCGGAATAGCCGCAGTTTTGGTTGACGACGGCCTGAA
CATGCCAGATATGATTCCTCTCGCGGAAATGAGCACTTTTGGAGTGCCTC
TTGTTCGAAGGGTATTACGTTTAGAGGTAGAGGCCGAATCAGTTATCAGG
GAGCTTGTCATGGAAAATGAGAACGGAGTATGGAGAAAAGTGGAGAGACC
GTCGTCTCCTGAGAAGAGACCGCGGACAACTGTTAGAGCCGAAATGTTTC
TTCAGAGATTGAGGGCACGCTTGTCTCCCCTACAGGAAGGTGTGGTGGCT
TTCAAAAGCATTGCAGCTTACCGTTCGGATCTGAATATTCACCTCGACTG
TTCTGACGAAGAACTCGATGAGAAGCTGCAAGAGACGGCCAACACCATGG
ATGACAACGTAACCGATCCGCTTTCACTGCGATTGAGCAACAAACAAATC
ATTGGTCGCGTCGTGCGAATGGCTCTCCAAGTCGCAGATCAACATGAGAT
ACCCATTCAATTTCACTGCGGTTTTGGAGACACAGATCTGAGACTGGAGG
AAGCGAACCCGCTACTACTGAAACCGTTGCTCGAAAGTTTCCCCAACGTG
AACGTTGTGCTTTTACATGCAGCATGGCCCTTCGTTCGAGAAGCAGCTTA
TCTCACATCGGTGTTTCGCAACTGCTTTCTTGATTTTGGTCTGGCCATCC
CTTTGCTCTCCGTCCGAGGGATGTTTCGAGCACTGGACAGCGCGATGGAA
GTGGCGCCAGTGTCAAGATTGTTGTACTCTAGCGACGCCCATGTCGTTCC
AGATATGTACTATCTTGGGGCTCGATGGGGGAGACGTGTGGTTGCGGCAG
CAATATCTGCCAATGTCCAGGCCGGAGACCTGACTGTTTCTGAGGGAAAA
GCTGCAGTGCGGAAGATTTTGGCGGACAATGCCATCAGTTTGTACAGACT
TCCAGTGCAGTCTTCCTGA

protein sequence of Gcaud792.t1

>Gcaud792.t1 ID=Gcaud792.t1|Name=Gcaud792.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=473bp
MDLSSHSVTQTPTYSELEAVADATLLIDNHAHPLSRATPRPLSSMLTEAP
TSSFDPYPACATLAYNRAMRDISALLAHETERSRAFQETPTTAAPSHVLA
SSSPETPTPVTPSENSTADDEDHAFDGAAPVYNALEQRRAALGVARLASR
CFSAAGIAAVLVDDGLNMPDMIPLAEMSTFGVPLVRRVLRLEVEAESVIR
ELVMENENGVWRKVERPSSPEKRPRTTVRAEMFLQRLRARLSPLQEGVVA
FKSIAAYRSDLNIHLDCSDEELDEKLQETANTMDDNVTDPLSLRLSNKQI
IGRVVRMALQVADQHEIPIQFHCGFGDTDLRLEEANPLLLKPLLESFPNV
NVVLLHAAWPFVREAAYLTSVFRNCFLDFGLAIPLLSVRGMFRALDSAME
VAPVSRLLYSSDAHVVPDMYYLGARWGRRVVAAAISANVQAGDLTVSEGK
AAVRKILADNAISLYRLPVQSS*

mRNA from alignment at NODE_330_length_29762_cov_4.444879:24816..26234+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud792.t1 ID=Gcaud792.t1|Name=Gcaud792.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1419bp|location=Sequence derived from alignment at NODE_330_length_29762_cov_4.444879:24816..26234+ (Gracilaria caudata M_176_S67 male)
ATGGACCTCTCGTCGCACTCCGTAACGCAGACACCGACTTATTCGGAACT
TGAAGCAGTTGCTGATGCCACGCTCTTAATTGACAACCATGCACATCCTT
TGAGCCGAGCAACGCCACGTCCGTTGTCCAGCATGTTGACGGAGGCTCCT
ACGAGCTCTTTCGATCCGTATCCCGCCTGTGCGACGTTGGCGTACAACCG
CGCGATGCGCGACATATCGGCTCTTTTGGCCCATGAAACTGAACGAAGTC
GAGCGTTTCAAGAGACCCCAACAACCGCTGCACCGTCGCACGTGCTCGCA
TCATCCTCTCCAGAAACGCCAACACCTGTGACTCCATCTGAAAACAGCAC
GGCTGATGACGAAGATCACGCGTTTGACGGCGCGGCACCAGTGTACAATG
CTTTGGAACAGCGTCGAGCTGCGCTTGGCGTGGCACGTCTCGCCAGCAGA
TGTTTTTCAGCAGCCGGAATAGCCGCAGTTTTGGTTGACGACGGCCTGAA
CATGCCAGATATGATTCCTCTCGCGGAAATGAGCACTTTTGGAGTGCCTC
TTGTTCGAAGGGTATTACGTTTAGAGGTAGAGGCCGAATCAGTTATCAGG
GAGCTTGTCATGGAAAATGAGAACGGAGTATGGAGAAAAGTGGAGAGACC
GTCGTCTCCTGAGAAGAGACCGCGGACAACTGTTAGAGCCGAAATGTTTC
TTCAGAGATTGAGGGCACGCTTGTCTCCCCTACAGGAAGGTGTGGTGGCT
TTCAAAAGCATTGCAGCTTACCGTTCGGATCTGAATATTCACCTCGACTG
TTCTGACGAAGAACTCGATGAGAAGCTGCAAGAGACGGCCAACACCATGG
ATGACAACGTAACCGATCCGCTTTCACTGCGATTGAGCAACAAACAAATC
ATTGGTCGCGTCGTGCGAATGGCTCTCCAAGTCGCAGATCAACATGAGAT
ACCCATTCAATTTCACTGCGGTTTTGGAGACACAGATCTGAGACTGGAGG
AAGCGAACCCGCTACTACTGAAACCGTTGCTCGAAAGTTTCCCCAACGTG
AACGTTGTGCTTTTACATGCAGCATGGCCCTTCGTTCGAGAAGCAGCTTA
TCTCACATCGGTGTTTCGCAACTGCTTTCTTGATTTTGGTCTGGCCATCC
CTTTGCTCTCCGTCCGAGGGATGTTTCGAGCACTGGACAGCGCGATGGAA
GTGGCGCCAGTGTCAAGATTGTTGTACTCTAGCGACGCCCATGTCGTTCC
AGATATGTACTATCTTGGGGCTCGATGGGGGAGACGTGTGGTTGCGGCAG
CAATATCTGCCAATGTCCAGGCCGGAGACCTGACTGTTTCTGAGGGAAAA
GCTGCAGTGCGGAAGATTTTGGCGGACAATGCCATCAGTTTGTACAGACT
TCCAGTGCAGTCTTCCTGA

Coding sequence (CDS) from alignment at NODE_330_length_29762_cov_4.444879:24816..26234+

>Gcaud792.t1 ID=Gcaud792.t1|Name=Gcaud792.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1419bp|location=Sequence derived from alignment at NODE_330_length_29762_cov_4.444879:24816..26234+ (Gracilaria caudata M_176_S67 male)
ATGGACCTCTCGTCGCACTCCGTAACGCAGACACCGACTTATTCGGAACT
TGAAGCAGTTGCTGATGCCACGCTCTTAATTGACAACCATGCACATCCTT
TGAGCCGAGCAACGCCACGTCCGTTGTCCAGCATGTTGACGGAGGCTCCT
ACGAGCTCTTTCGATCCGTATCCCGCCTGTGCGACGTTGGCGTACAACCG
CGCGATGCGCGACATATCGGCTCTTTTGGCCCATGAAACTGAACGAAGTC
GAGCGTTTCAAGAGACCCCAACAACCGCTGCACCGTCGCACGTGCTCGCA
TCATCCTCTCCAGAAACGCCAACACCTGTGACTCCATCTGAAAACAGCAC
GGCTGATGACGAAGATCACGCGTTTGACGGCGCGGCACCAGTGTACAATG
CTTTGGAACAGCGTCGAGCTGCGCTTGGCGTGGCACGTCTCGCCAGCAGA
TGTTTTTCAGCAGCCGGAATAGCCGCAGTTTTGGTTGACGACGGCCTGAA
CATGCCAGATATGATTCCTCTCGCGGAAATGAGCACTTTTGGAGTGCCTC
TTGTTCGAAGGGTATTACGTTTAGAGGTAGAGGCCGAATCAGTTATCAGG
GAGCTTGTCATGGAAAATGAGAACGGAGTATGGAGAAAAGTGGAGAGACC
GTCGTCTCCTGAGAAGAGACCGCGGACAACTGTTAGAGCCGAAATGTTTC
TTCAGAGATTGAGGGCACGCTTGTCTCCCCTACAGGAAGGTGTGGTGGCT
TTCAAAAGCATTGCAGCTTACCGTTCGGATCTGAATATTCACCTCGACTG
TTCTGACGAAGAACTCGATGAGAAGCTGCAAGAGACGGCCAACACCATGG
ATGACAACGTAACCGATCCGCTTTCACTGCGATTGAGCAACAAACAAATC
ATTGGTCGCGTCGTGCGAATGGCTCTCCAAGTCGCAGATCAACATGAGAT
ACCCATTCAATTTCACTGCGGTTTTGGAGACACAGATCTGAGACTGGAGG
AAGCGAACCCGCTACTACTGAAACCGTTGCTCGAAAGTTTCCCCAACGTG
AACGTTGTGCTTTTACATGCAGCATGGCCCTTCGTTCGAGAAGCAGCTTA
TCTCACATCGGTGTTTCGCAACTGCTTTCTTGATTTTGGTCTGGCCATCC
CTTTGCTCTCCGTCCGAGGGATGTTTCGAGCACTGGACAGCGCGATGGAA
GTGGCGCCAGTGTCAAGATTGTTGTACTCTAGCGACGCCCATGTCGTTCC
AGATATGTACTATCTTGGGGCTCGATGGGGGAGACGTGTGGTTGCGGCAG
CAATATCTGCCAATGTCCAGGCCGGAGACCTGACTGTTTCTGAGGGAAAA
GCTGCAGTGCGGAAGATTTTGGCGGACAATGCCATCAGTTTGTACAGACT
TCCAGTGCAGTCTTCCTGA