Gcaud7882.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7882.t1
Unique NameGcaud7882.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_465_length_24681_cov_4.375641contigNODE_465_length_24681_cov_4.375641:7947..8789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1150469.RSPPHO_02653
Preferred namelpxC
PFAMsLpxC
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00166,RC00300
KEGG koko:K02535
KEGG ReactionR04587
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00060
Evalue7.71e-47
EggNOG OGsCOG0774@1|root,COG0774@2|Bacteria,1MV6T@1224|Proteobacteria,2TUHH@28211|Alphaproteobacteria,2JPDC@204441|Rhodospirillales
EC3.5.1.108
DescriptionCatalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7882Gcaud7882Gracilaria caudata M_176_S67 malegeneNODE_465_length_24681_cov_4.375641 7947..8789 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7882.t1.stop1Gcaud7882.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_465_length_24681_cov_4.375641 7947..7949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7882.t1.CDS1Gcaud7882.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_465_length_24681_cov_4.375641 7947..8789 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7882.t1.exon1Gcaud7882.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_465_length_24681_cov_4.375641 7947..8789 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7882.t1.start1Gcaud7882.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_465_length_24681_cov_4.375641 8787..8789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7882.t1Gcaud7882.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_465_length_24681_cov_4.375641 7947..8789 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7882.t1 ID=Gcaud7882.t1|Name=Gcaud7882.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=281bp
MRFVSTALHAGTPSVLTLRPAPANTGITFHHRNDCIPATFENVADATLCT
TLRAPSSSATTVSSVEHLLAALSAAGVDNVQAHTSSGELPIMDGSAWAFT
LALKGQVVPLNAQKRLTIVRRAVRVNSDDGKAHASLWPLPGVRSLDVEVM
TFVNGMSRSNLGTQRVAFTLSEGSFRRHVARARTFWSKSELERWREKGLI
LGGGMDNSLLYEEGGRVLNSEGLRYSDEICRHLAVDCIGDLRLGGVVLGR
YTAVRPAHWLNVELLRKLYRDPENYVLEGD*
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spliced messenger RNA

>Gcaud7882.t1 ID=Gcaud7882.t1|Name=Gcaud7882.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:7947..8789- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTTGTGAGCACTGCGCTTCATGCAGGAACGCCATCGGTTCTAAC
GCTGCGTCCAGCTCCGGCAAACACTGGGATCACCTTCCATCATCGGAATG
ACTGCATCCCCGCAACGTTTGAAAACGTTGCGGATGCCACTCTATGCACT
ACATTAAGGGCGCCATCATCATCTGCAACGACCGTGTCCAGCGTGGAACA
TTTGCTTGCGGCTTTGTCGGCAGCTGGGGTGGACAACGTACAAGCACACA
CATCAAGCGGTGAATTGCCAATTATGGACGGCTCCGCGTGGGCATTCACT
CTCGCGTTGAAGGGGCAGGTGGTGCCCTTGAACGCCCAAAAGCGCTTAAC
AATTGTACGGAGAGCAGTACGTGTTAATTCAGACGACGGGAAAGCCCACG
CCTCACTTTGGCCGCTTCCGGGAGTAAGATCGCTGGACGTGGAAGTGATG
ACGTTTGTAAATGGCATGTCGCGCTCTAACCTGGGCACGCAGAGAGTGGC
GTTCACTCTTTCAGAGGGATCCTTCCGCAGGCATGTCGCTCGTGCGCGAA
CGTTCTGGTCTAAGAGTGAATTGGAACGATGGCGTGAAAAAGGGCTCATA
CTTGGAGGAGGTATGGATAACTCTCTCTTGTACGAAGAAGGAGGAAGAGT
ACTCAACTCAGAAGGACTTCGATATTCAGACGAGATATGTCGTCATCTGG
CAGTGGATTGTATCGGAGACCTAAGATTGGGGGGGGTTGTATTAGGCAGA
TATACGGCAGTTAGACCTGCGCATTGGTTAAACGTTGAGTTGTTGAGAAA
GCTTTACAGAGATCCGGAGAATTATGTCCTAGAGGGCGACTGA
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protein sequence of Gcaud7882.t1

>Gcaud7882.t1 ID=Gcaud7882.t1|Name=Gcaud7882.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
MRFVSTALHAGTPSVLTLRPAPANTGITFHHRNDCIPATFENVADATLCT
TLRAPSSSATTVSSVEHLLAALSAAGVDNVQAHTSSGELPIMDGSAWAFT
LALKGQVVPLNAQKRLTIVRRAVRVNSDDGKAHASLWPLPGVRSLDVEVM
TFVNGMSRSNLGTQRVAFTLSEGSFRRHVARARTFWSKSELERWREKGLI
LGGGMDNSLLYEEGGRVLNSEGLRYSDEICRHLAVDCIGDLRLGGVVLGR
YTAVRPAHWLNVELLRKLYRDPENYVLEGD*
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mRNA from alignment at NODE_465_length_24681_cov_4.375641:7947..8789-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7882.t1 ID=Gcaud7882.t1|Name=Gcaud7882.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:7947..8789- (Gracilaria caudata M_176_S67 male)
ATGCGCTTTGTGAGCACTGCGCTTCATGCAGGAACGCCATCGGTTCTAAC
GCTGCGTCCAGCTCCGGCAAACACTGGGATCACCTTCCATCATCGGAATG
ACTGCATCCCCGCAACGTTTGAAAACGTTGCGGATGCCACTCTATGCACT
ACATTAAGGGCGCCATCATCATCTGCAACGACCGTGTCCAGCGTGGAACA
TTTGCTTGCGGCTTTGTCGGCAGCTGGGGTGGACAACGTACAAGCACACA
CATCAAGCGGTGAATTGCCAATTATGGACGGCTCCGCGTGGGCATTCACT
CTCGCGTTGAAGGGGCAGGTGGTGCCCTTGAACGCCCAAAAGCGCTTAAC
AATTGTACGGAGAGCAGTACGTGTTAATTCAGACGACGGGAAAGCCCACG
CCTCACTTTGGCCGCTTCCGGGAGTAAGATCGCTGGACGTGGAAGTGATG
ACGTTTGTAAATGGCATGTCGCGCTCTAACCTGGGCACGCAGAGAGTGGC
GTTCACTCTTTCAGAGGGATCCTTCCGCAGGCATGTCGCTCGTGCGCGAA
CGTTCTGGTCTAAGAGTGAATTGGAACGATGGCGTGAAAAAGGGCTCATA
CTTGGAGGAGGTATGGATAACTCTCTCTTGTACGAAGAAGGAGGAAGAGT
ACTCAACTCAGAAGGACTTCGATATTCAGACGAGATATGTCGTCATCTGG
CAGTGGATTGTATCGGAGACCTAAGATTGGGGGGGGTTGTATTAGGCAGA
TATACGGCAGTTAGACCTGCGCATTGGTTAAACGTTGAGTTGTTGAGAAA
GCTTTACAGAGATCCGGAGAATTATGTCCTAGAGGGCGACTGA
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Coding sequence (CDS) from alignment at NODE_465_length_24681_cov_4.375641:7947..8789-

>Gcaud7882.t1 ID=Gcaud7882.t1|Name=Gcaud7882.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=843bp|location=Sequence derived from alignment at NODE_465_length_24681_cov_4.375641:7947..8789- (Gracilaria caudata M_176_S67 male)
ATGCGCTTTGTGAGCACTGCGCTTCATGCAGGAACGCCATCGGTTCTAAC
GCTGCGTCCAGCTCCGGCAAACACTGGGATCACCTTCCATCATCGGAATG
ACTGCATCCCCGCAACGTTTGAAAACGTTGCGGATGCCACTCTATGCACT
ACATTAAGGGCGCCATCATCATCTGCAACGACCGTGTCCAGCGTGGAACA
TTTGCTTGCGGCTTTGTCGGCAGCTGGGGTGGACAACGTACAAGCACACA
CATCAAGCGGTGAATTGCCAATTATGGACGGCTCCGCGTGGGCATTCACT
CTCGCGTTGAAGGGGCAGGTGGTGCCCTTGAACGCCCAAAAGCGCTTAAC
AATTGTACGGAGAGCAGTACGTGTTAATTCAGACGACGGGAAAGCCCACG
CCTCACTTTGGCCGCTTCCGGGAGTAAGATCGCTGGACGTGGAAGTGATG
ACGTTTGTAAATGGCATGTCGCGCTCTAACCTGGGCACGCAGAGAGTGGC
GTTCACTCTTTCAGAGGGATCCTTCCGCAGGCATGTCGCTCGTGCGCGAA
CGTTCTGGTCTAAGAGTGAATTGGAACGATGGCGTGAAAAAGGGCTCATA
CTTGGAGGAGGTATGGATAACTCTCTCTTGTACGAAGAAGGAGGAAGAGT
ACTCAACTCAGAAGGACTTCGATATTCAGACGAGATATGTCGTCATCTGG
CAGTGGATTGTATCGGAGACCTAAGATTGGGGGGGGTTGTATTAGGCAGA
TATACGGCAGTTAGACCTGCGCATTGGTTAAACGTTGAGTTGTTGAGAAA
GCTTTACAGAGATCCGGAGAATTATGTCCTAGAGGGCGACTGA
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