Gcaud7875.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7875.t1
Unique Name	Gcaud7875.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	281

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1714_length_8869_cov_3.836523	contig	NODE_1714_length_8869_cov_3.836523:1980..2822 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707441.1
PFAMs	adh_short
Max annot lvl	2759\|Eukaryota
Evalue	1.72e-46
EggNOG OGs	COG1028@1\|root,KOG1205@2759\|Eukaryota
Description	oxidation-reduction process
COG category	IQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7875	Gcaud7875	Gracilaria caudata M_176_S67 male	gene	NODE_1714_length_8869_cov_3.836523 1980..2822 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7875.t1.start1	Gcaud7875.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1714_length_8869_cov_3.836523 1980..1982 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7875.t1.CDS1	Gcaud7875.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1714_length_8869_cov_3.836523 1980..2822 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7875.t1.exon1	Gcaud7875.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1714_length_8869_cov_3.836523 1980..2822 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7875.t1.stop1	Gcaud7875.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1714_length_8869_cov_3.836523 2820..2822 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7875.t1	Gcaud7875.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1714_length_8869_cov_3.836523 1980..2822 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1714_length_8869_cov_3.836523:1980..2822+
coding sequence from alignment at NODE_1714_length_8869_cov_3.836523:1980..2822+

mRNA sequence

>Gcaud7875.t1 ID=Gcaud7875.t1|Name=Gcaud7875.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=281bp
MWPLLAFLIVACAAAYVLHRRRVARAVAALRGKHVWLIGASRGIGRAVAV
HLASLGARLTLSSRPSPALQQLAEQLDPSVHAVVPLDVTDVHAVSAAVQL
VLHDARVHVVLANAGINHQNKPFSMLDAQQIDRVLDTNIRSVAHLFSHLL
PAFTKHGGVLCAVSSLAAYRGVSGGSVYCASKAALTSLCQSLNVELYHSK
ARVVCVHPGFVDTSAISNLSNPKPFLITDHQAAVHIVEAIAMEYSHYGFP
WIMENVVLNFSACVPTPIYNFVMSKVNVYS*

spliced messenger RNA

>Gcaud7875.t1 ID=Gcaud7875.t1|Name=Gcaud7875.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_1714_length_8869_cov_3.836523:1980..2822+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCCGCTGCTTGCGTTTCTCATTGTTGCGTGCGCGGCGGCGTACGT
GCTTCATCGTCGCCGTGTGGCGCGCGCCGTCGCCGCGCTGCGTGGCAAGC
ACGTGTGGCTGATCGGTGCCTCGCGTGGTATAGGCCGTGCCGTTGCCGTG
CATCTTGCTTCGCTGGGAGCAAGGCTCACACTGTCGTCGCGACCGTCACC
AGCATTGCAGCAGCTCGCCGAGCAGCTCGACCCGTCCGTGCACGCCGTGG
TTCCGCTCGATGTCACGGATGTGCACGCCGTGTCGGCCGCCGTGCAACTC
GTTCTCCACGACGCCCGTGTGCATGTCGTGCTGGCCAATGCCGGCATCAA
TCACCAGAACAAGCCCTTCTCCATGCTTGACGCGCAGCAGATTGATCGCG
TGCTGGACACCAATATCCGATCTGTTGCGCACTTGTTCTCGCATCTGTTG
CCTGCCTTCACCAAGCACGGCGGCGTGCTTTGCGCTGTGTCGTCGCTGGC
TGCGTACAGGGGCGTCAGCGGCGGCTCTGTGTACTGTGCGAGCAAAGCGG
CGCTCACCTCTTTGTGCCAGTCCTTGAACGTAGAACTTTACCACTCCAAG
GCGCGTGTCGTTTGCGTCCACCCCGGTTTTGTTGATACTTCTGCTATATC
CAATCTCTCAAACCCAAAACCGTTCCTCATCACCGATCATCAAGCTGCCG
TGCACATTGTTGAGGCCATCGCCATGGAGTATTCACATTACGGCTTCCCA
TGGATCATGGAAAACGTTGTGCTCAACTTCTCGGCTTGTGTTCCCACTCC
CATATACAACTTTGTCATGTCCAAGGTGAACGTATACAGCTGA

protein sequence of Gcaud7875.t1

>Gcaud7875.t1 ID=Gcaud7875.t1|Name=Gcaud7875.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
MWPLLAFLIVACAAAYVLHRRRVARAVAALRGKHVWLIGASRGIGRAVAV
HLASLGARLTLSSRPSPALQQLAEQLDPSVHAVVPLDVTDVHAVSAAVQL
VLHDARVHVVLANAGINHQNKPFSMLDAQQIDRVLDTNIRSVAHLFSHLL
PAFTKHGGVLCAVSSLAAYRGVSGGSVYCASKAALTSLCQSLNVELYHSK
ARVVCVHPGFVDTSAISNLSNPKPFLITDHQAAVHIVEAIAMEYSHYGFP
WIMENVVLNFSACVPTPIYNFVMSKVNVYS*

mRNA from alignment at NODE_1714_length_8869_cov_3.836523:1980..2822+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7875.t1 ID=Gcaud7875.t1|Name=Gcaud7875.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_1714_length_8869_cov_3.836523:1980..2822+ (Gracilaria caudata M_176_S67 male)
ATGTGGCCGCTGCTTGCGTTTCTCATTGTTGCGTGCGCGGCGGCGTACGT
GCTTCATCGTCGCCGTGTGGCGCGCGCCGTCGCCGCGCTGCGTGGCAAGC
ACGTGTGGCTGATCGGTGCCTCGCGTGGTATAGGCCGTGCCGTTGCCGTG
CATCTTGCTTCGCTGGGAGCAAGGCTCACACTGTCGTCGCGACCGTCACC
AGCATTGCAGCAGCTCGCCGAGCAGCTCGACCCGTCCGTGCACGCCGTGG
TTCCGCTCGATGTCACGGATGTGCACGCCGTGTCGGCCGCCGTGCAACTC
GTTCTCCACGACGCCCGTGTGCATGTCGTGCTGGCCAATGCCGGCATCAA
TCACCAGAACAAGCCCTTCTCCATGCTTGACGCGCAGCAGATTGATCGCG
TGCTGGACACCAATATCCGATCTGTTGCGCACTTGTTCTCGCATCTGTTG
CCTGCCTTCACCAAGCACGGCGGCGTGCTTTGCGCTGTGTCGTCGCTGGC
TGCGTACAGGGGCGTCAGCGGCGGCTCTGTGTACTGTGCGAGCAAAGCGG
CGCTCACCTCTTTGTGCCAGTCCTTGAACGTAGAACTTTACCACTCCAAG
GCGCGTGTCGTTTGCGTCCACCCCGGTTTTGTTGATACTTCTGCTATATC
CAATCTCTCAAACCCAAAACCGTTCCTCATCACCGATCATCAAGCTGCCG
TGCACATTGTTGAGGCCATCGCCATGGAGTATTCACATTACGGCTTCCCA
TGGATCATGGAAAACGTTGTGCTCAACTTCTCGGCTTGTGTTCCCACTCC
CATATACAACTTTGTCATGTCCAAGGTGAACGTATACAGCTGA

Coding sequence (CDS) from alignment at NODE_1714_length_8869_cov_3.836523:1980..2822+

>Gcaud7875.t1 ID=Gcaud7875.t1|Name=Gcaud7875.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=843bp|location=Sequence derived from alignment at NODE_1714_length_8869_cov_3.836523:1980..2822+ (Gracilaria caudata M_176_S67 male)
ATGTGGCCGCTGCTTGCGTTTCTCATTGTTGCGTGCGCGGCGGCGTACGT
GCTTCATCGTCGCCGTGTGGCGCGCGCCGTCGCCGCGCTGCGTGGCAAGC
ACGTGTGGCTGATCGGTGCCTCGCGTGGTATAGGCCGTGCCGTTGCCGTG
CATCTTGCTTCGCTGGGAGCAAGGCTCACACTGTCGTCGCGACCGTCACC
AGCATTGCAGCAGCTCGCCGAGCAGCTCGACCCGTCCGTGCACGCCGTGG
TTCCGCTCGATGTCACGGATGTGCACGCCGTGTCGGCCGCCGTGCAACTC
GTTCTCCACGACGCCCGTGTGCATGTCGTGCTGGCCAATGCCGGCATCAA
TCACCAGAACAAGCCCTTCTCCATGCTTGACGCGCAGCAGATTGATCGCG
TGCTGGACACCAATATCCGATCTGTTGCGCACTTGTTCTCGCATCTGTTG
CCTGCCTTCACCAAGCACGGCGGCGTGCTTTGCGCTGTGTCGTCGCTGGC
TGCGTACAGGGGCGTCAGCGGCGGCTCTGTGTACTGTGCGAGCAAAGCGG
CGCTCACCTCTTTGTGCCAGTCCTTGAACGTAGAACTTTACCACTCCAAG
GCGCGTGTCGTTTGCGTCCACCCCGGTTTTGTTGATACTTCTGCTATATC
CAATCTCTCAAACCCAAAACCGTTCCTCATCACCGATCATCAAGCTGCCG
TGCACATTGTTGAGGCCATCGCCATGGAGTATTCACATTACGGCTTCCCA
TGGATCATGGAAAACGTTGTGCTCAACTTCTCGGCTTGTGTTCCCACTCC
CATATACAACTTTGTCATGTCCAAGGTGAACGTATACAGCTGA