Gcaud7874.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7874.t1
Unique NameGcaud7874.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1714_length_8869_cov_3.836523contigNODE_1714_length_8869_cov_3.836523:601..1182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7874Gcaud7874Gracilaria caudata M_176_S67 malegeneNODE_1714_length_8869_cov_3.836523 601..1182 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7874.t1.stop1Gcaud7874.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1714_length_8869_cov_3.836523 601..603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7874.t1.CDS1Gcaud7874.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1714_length_8869_cov_3.836523 601..1182 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7874.t1.exon1Gcaud7874.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1714_length_8869_cov_3.836523 601..1182 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7874.t1.start1Gcaud7874.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1714_length_8869_cov_3.836523 1180..1182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7874.t1Gcaud7874.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1714_length_8869_cov_3.836523 601..1182 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7874.t1 ID=Gcaud7874.t1|Name=Gcaud7874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=194bp
MASRRNRPFPCEDAPPPCSKALLPDSILGSLSDEEDGGEDGVAVVMRMLD
ASPAARAPIISPTNIDRIFADWNVDLCAARTRYVVDTPPPFAPPSVPCDS
KLSAERQWCYGEDCTVADVFTRVVPDRQKEEIKRRLPGRRWSDAVKRFRI
LCGEVVDTCGEQQKRRAFWRRGSRTETKLKIQCPIRKTLAKFR*
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spliced messenger RNA

>Gcaud7874.t1 ID=Gcaud7874.t1|Name=Gcaud7874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp|location=Sequence derived from alignment at NODE_1714_length_8869_cov_3.836523:601..1182- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGCCGAAGGAACCGCCCTTTTCCGTGCGAAGACGCGCCGCCACC
GTGCTCGAAGGCGCTGTTACCGGACTCGATTCTGGGCTCTCTGAGCGACG
AGGAGGACGGCGGAGAGGATGGTGTGGCGGTGGTGATGAGGATGTTGGAC
GCCTCACCGGCTGCCAGAGCGCCGATCATATCGCCCACCAACATTGACCG
CATCTTCGCGGACTGGAACGTGGACCTGTGCGCAGCTCGTACGCGATATG
TGGTGGATACTCCGCCGCCTTTTGCGCCGCCCTCCGTGCCGTGTGACAGC
AAACTGAGCGCGGAGAGGCAGTGGTGCTACGGGGAGGACTGTACTGTTGC
TGATGTGTTCACGCGCGTGGTGCCTGATAGACAGAAGGAGGAGATCAAGA
GACGACTACCGGGGCGACGCTGGTCAGACGCTGTGAAGCGGTTCCGAATC
TTGTGCGGAGAAGTTGTGGATACTTGCGGAGAACAACAGAAGCGAAGAGC
GTTCTGGAGAAGGGGCAGTCGCACGGAAACGAAGCTGAAGATTCAATGCC
CCATTCGAAAGACGCTAGCCAAGTTTCGGTAG
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protein sequence of Gcaud7874.t1

>Gcaud7874.t1 ID=Gcaud7874.t1|Name=Gcaud7874.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=194bp
MASRRNRPFPCEDAPPPCSKALLPDSILGSLSDEEDGGEDGVAVVMRMLD
ASPAARAPIISPTNIDRIFADWNVDLCAARTRYVVDTPPPFAPPSVPCDS
KLSAERQWCYGEDCTVADVFTRVVPDRQKEEIKRRLPGRRWSDAVKRFRI
LCGEVVDTCGEQQKRRAFWRRGSRTETKLKIQCPIRKTLAKFR*
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mRNA from alignment at NODE_1714_length_8869_cov_3.836523:601..1182-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7874.t1 ID=Gcaud7874.t1|Name=Gcaud7874.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp|location=Sequence derived from alignment at NODE_1714_length_8869_cov_3.836523:601..1182- (Gracilaria caudata M_176_S67 male)
ATGGCCAGCCGAAGGAACCGCCCTTTTCCGTGCGAAGACGCGCCGCCACC
GTGCTCGAAGGCGCTGTTACCGGACTCGATTCTGGGCTCTCTGAGCGACG
AGGAGGACGGCGGAGAGGATGGTGTGGCGGTGGTGATGAGGATGTTGGAC
GCCTCACCGGCTGCCAGAGCGCCGATCATATCGCCCACCAACATTGACCG
CATCTTCGCGGACTGGAACGTGGACCTGTGCGCAGCTCGTACGCGATATG
TGGTGGATACTCCGCCGCCTTTTGCGCCGCCCTCCGTGCCGTGTGACAGC
AAACTGAGCGCGGAGAGGCAGTGGTGCTACGGGGAGGACTGTACTGTTGC
TGATGTGTTCACGCGCGTGGTGCCTGATAGACAGAAGGAGGAGATCAAGA
GACGACTACCGGGGCGACGCTGGTCAGACGCTGTGAAGCGGTTCCGAATC
TTGTGCGGAGAAGTTGTGGATACTTGCGGAGAACAACAGAAGCGAAGAGC
GTTCTGGAGAAGGGGCAGTCGCACGGAAACGAAGCTGAAGATTCAATGCC
CCATTCGAAAGACGCTAGCCAAGTTTCGGTAG
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Coding sequence (CDS) from alignment at NODE_1714_length_8869_cov_3.836523:601..1182-

>Gcaud7874.t1 ID=Gcaud7874.t1|Name=Gcaud7874.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=582bp|location=Sequence derived from alignment at NODE_1714_length_8869_cov_3.836523:601..1182- (Gracilaria caudata M_176_S67 male)
ATGGCCAGCCGAAGGAACCGCCCTTTTCCGTGCGAAGACGCGCCGCCACC
GTGCTCGAAGGCGCTGTTACCGGACTCGATTCTGGGCTCTCTGAGCGACG
AGGAGGACGGCGGAGAGGATGGTGTGGCGGTGGTGATGAGGATGTTGGAC
GCCTCACCGGCTGCCAGAGCGCCGATCATATCGCCCACCAACATTGACCG
CATCTTCGCGGACTGGAACGTGGACCTGTGCGCAGCTCGTACGCGATATG
TGGTGGATACTCCGCCGCCTTTTGCGCCGCCCTCCGTGCCGTGTGACAGC
AAACTGAGCGCGGAGAGGCAGTGGTGCTACGGGGAGGACTGTACTGTTGC
TGATGTGTTCACGCGCGTGGTGCCTGATAGACAGAAGGAGGAGATCAAGA
GACGACTACCGGGGCGACGCTGGTCAGACGCTGTGAAGCGGTTCCGAATC
TTGTGCGGAGAAGTTGTGGATACTTGCGGAGAACAACAGAAGCGAAGAGC
GTTCTGGAGAAGGGGCAGTCGCACGGAAACGAAGCTGAAGATTCAATGCC
CCATTCGAAAGACGCTAGCCAAGTTTCGGTAG
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