Gcaud7873.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7873.t1
Unique NameGcaud7873.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1238_length_12255_cov_4.374630contigNODE_1238_length_12255_cov_4.374630:11428..11994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704023.1
PFAMsThioredoxin
Max annot lvl2759|Eukaryota
Evalue2.5e-38
EggNOG OGsCOG0526@1|root,KOG1672@2759|Eukaryota
Descriptionqueuosine biosynthetic process
COG categoryCO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7873Gcaud7873Gracilaria caudata M_176_S67 malegeneNODE_1238_length_12255_cov_4.374630 11428..11994 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7873.t1.stop1Gcaud7873.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1238_length_12255_cov_4.374630 11428..11430 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7873.t1.CDS1Gcaud7873.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1238_length_12255_cov_4.374630 11428..11994 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7873.t1.exon1Gcaud7873.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1238_length_12255_cov_4.374630 11428..11994 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7873.t1.start1Gcaud7873.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1238_length_12255_cov_4.374630 11992..11994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7873.t1Gcaud7873.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1238_length_12255_cov_4.374630 11428..11994 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7873.t1 ID=Gcaud7873.t1|Name=Gcaud7873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=189bp
MAQVQNLVEAAVKNAVEGLEEKLDSEIDRLNNLDDDDLEAIRRKRLAEMK
KNAEEQAMWRRNGHGTVQRITEKEFFSRAKSSKRMVSIMFRPGSNRYAED
LLEHIGRIAQRHLETLFTATDVEKAPFLCDRLNIRVLPSIILVKDSEIDQ
VLLGLDQISATGKFTTAGIEKRLHSFGMVTNTDIADDE*
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spliced messenger RNA

>Gcaud7873.t1 ID=Gcaud7873.t1|Name=Gcaud7873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=567bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:11428..11994- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAGGTGCAAAACTTAGTGGAAGCTGCAGTGAAGAATGCCGTTGA
GGGTCTGGAAGAGAAGCTTGATTCAGAAATAGATCGGCTGAATAATCTAG
ACGACGATGACTTAGAAGCCATTCGCCGTAAACGCCTGGCAGAAATGAAA
AAGAACGCAGAAGAGCAAGCTATGTGGCGAAGAAACGGTCATGGCACGGT
CCAGCGTATCACAGAGAAAGAGTTCTTCTCGCGAGCAAAGTCGTCGAAGC
GCATGGTCTCTATAATGTTTAGACCAGGCTCGAATAGGTATGCAGAGGAC
TTGCTGGAGCACATCGGCAGGATAGCCCAACGCCATCTGGAAACCCTATT
TACGGCGACGGACGTTGAGAAGGCTCCTTTCTTGTGTGACAGGTTGAACA
TTCGTGTTCTACCTTCAATAATACTAGTCAAGGATTCTGAGATTGACCAG
GTGCTATTGGGCCTCGATCAAATAAGCGCAACTGGCAAGTTTACTACCGC
TGGCATCGAGAAACGCTTGCATTCGTTCGGTATGGTAACCAACACTGACA
TTGCAGACGACGAGTGA
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protein sequence of Gcaud7873.t1

>Gcaud7873.t1 ID=Gcaud7873.t1|Name=Gcaud7873.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=189bp
MAQVQNLVEAAVKNAVEGLEEKLDSEIDRLNNLDDDDLEAIRRKRLAEMK
KNAEEQAMWRRNGHGTVQRITEKEFFSRAKSSKRMVSIMFRPGSNRYAED
LLEHIGRIAQRHLETLFTATDVEKAPFLCDRLNIRVLPSIILVKDSEIDQ
VLLGLDQISATGKFTTAGIEKRLHSFGMVTNTDIADDE*
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mRNA from alignment at NODE_1238_length_12255_cov_4.374630:11428..11994-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7873.t1 ID=Gcaud7873.t1|Name=Gcaud7873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=567bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:11428..11994- (Gracilaria caudata M_176_S67 male)
ATGGCTCAGGTGCAAAACTTAGTGGAAGCTGCAGTGAAGAATGCCGTTGA
GGGTCTGGAAGAGAAGCTTGATTCAGAAATAGATCGGCTGAATAATCTAG
ACGACGATGACTTAGAAGCCATTCGCCGTAAACGCCTGGCAGAAATGAAA
AAGAACGCAGAAGAGCAAGCTATGTGGCGAAGAAACGGTCATGGCACGGT
CCAGCGTATCACAGAGAAAGAGTTCTTCTCGCGAGCAAAGTCGTCGAAGC
GCATGGTCTCTATAATGTTTAGACCAGGCTCGAATAGGTATGCAGAGGAC
TTGCTGGAGCACATCGGCAGGATAGCCCAACGCCATCTGGAAACCCTATT
TACGGCGACGGACGTTGAGAAGGCTCCTTTCTTGTGTGACAGGTTGAACA
TTCGTGTTCTACCTTCAATAATACTAGTCAAGGATTCTGAGATTGACCAG
GTGCTATTGGGCCTCGATCAAATAAGCGCAACTGGCAAGTTTACTACCGC
TGGCATCGAGAAACGCTTGCATTCGTTCGGTATGGTAACCAACACTGACA
TTGCAGACGACGAGTGA
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Coding sequence (CDS) from alignment at NODE_1238_length_12255_cov_4.374630:11428..11994-

>Gcaud7873.t1 ID=Gcaud7873.t1|Name=Gcaud7873.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=567bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:11428..11994- (Gracilaria caudata M_176_S67 male)
ATGGCTCAGGTGCAAAACTTAGTGGAAGCTGCAGTGAAGAATGCCGTTGA
GGGTCTGGAAGAGAAGCTTGATTCAGAAATAGATCGGCTGAATAATCTAG
ACGACGATGACTTAGAAGCCATTCGCCGTAAACGCCTGGCAGAAATGAAA
AAGAACGCAGAAGAGCAAGCTATGTGGCGAAGAAACGGTCATGGCACGGT
CCAGCGTATCACAGAGAAAGAGTTCTTCTCGCGAGCAAAGTCGTCGAAGC
GCATGGTCTCTATAATGTTTAGACCAGGCTCGAATAGGTATGCAGAGGAC
TTGCTGGAGCACATCGGCAGGATAGCCCAACGCCATCTGGAAACCCTATT
TACGGCGACGGACGTTGAGAAGGCTCCTTTCTTGTGTGACAGGTTGAACA
TTCGTGTTCTACCTTCAATAATACTAGTCAAGGATTCTGAGATTGACCAG
GTGCTATTGGGCCTCGATCAAATAAGCGCAACTGGCAAGTTTACTACCGC
TGGCATCGAGAAACGCTTGCATTCGTTCGGTATGGTAACCAACACTGACA
TTGCAGACGACGAGTGA
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