Gcaud7868.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7868.t2
Unique Name	Gcaud7868.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	234

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1238_length_12255_cov_4.374630	contig	NODE_1238_length_12255_cov_4.374630:1653..2354 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	101852.XP_008075811.1
PFAMs	APH
Max annot lvl	4751\|Fungi
Evalue	1.21e-52
EggNOG OGs	2EISF@1\|root,2SP4H@2759\|Eukaryota,3AK9N@33154\|Opisthokonta,3PDBN@4751\|Fungi,3R35J@4890\|Ascomycota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7868	Gcaud7868	Gracilaria caudata M_176_S67 male	gene	NODE_1238_length_12255_cov_4.374630 1356..2354 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7868.t2.start1	Gcaud7868.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1238_length_12255_cov_4.374630 1653..1655 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7868.t2.CDS1	Gcaud7868.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1238_length_12255_cov_4.374630 1653..2354 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7868.t2.exon1	Gcaud7868.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1238_length_12255_cov_4.374630 1653..2354 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7868.t2.stop1	Gcaud7868.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1238_length_12255_cov_4.374630 2352..2354 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7868.t2	Gcaud7868.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1238_length_12255_cov_4.374630 1653..2354 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1238_length_12255_cov_4.374630:1653..2354+
coding sequence from alignment at NODE_1238_length_12255_cov_4.374630:1653..2354+

mRNA sequence

>Gcaud7868.t2 ID=Gcaud7868.t2|Name=Gcaud7868.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=234bp
MNKVEIHPYAMSLVPGMTWIEAPNAERDHVKILYSLGKVLSGGLVATDST
TVVEQVIVPKLKALQESTDVRIEPFKTHITALIKSAGTLISLPLFISHPD
LNQVNILVGESGEVSDIVDWEGSSQLPFGMGFCRIHELAGMYINGNFHMP
QDFAAAETSCWEAVFNGVPDHIQESLRCNMGAVQTSVKIGTVLENLDSEH
GFNKAAIKALPLFLTYRLPALRGKHEPPYLESL*

spliced messenger RNA

>Gcaud7868.t2 ID=Gcaud7868.t2|Name=Gcaud7868.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=702bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:1653..2354+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAAAGTTGAAATTCATCCTTACGCTATGTCGTTAGTTCCTGGGAT
GACTTGGATAGAGGCGCCGAATGCGGAGCGCGATCATGTCAAGATCCTCT
ATTCACTTGGGAAGGTTCTTTCCGGTGGCTTAGTTGCCACTGACAGCACG
ACAGTTGTCGAGCAGGTGATCGTACCGAAACTGAAAGCGCTTCAAGAGTC
GACAGACGTTCGCATTGAACCGTTCAAGACACACATCACAGCTCTGATTA
AGTCTGCGGGAACGCTAATAAGTCTTCCTCTGTTTATTTCGCACCCCGAT
CTCAACCAGGTGAACATTCTTGTCGGAGAAAGTGGAGAAGTATCTGATAT
TGTGGATTGGGAGGGCTCTTCACAACTACCGTTCGGTATGGGCTTCTGCA
GGATCCATGAACTAGCTGGGATGTACATCAATGGCAATTTTCACATGCCT
CAAGATTTTGCCGCTGCCGAAACGAGTTGCTGGGAAGCCGTCTTCAACGG
GGTGCCCGATCACATCCAGGAGTCTTTGCGTTGCAACATGGGAGCAGTAC
AGACGAGCGTCAAGATTGGAACTGTACTGGAAAACCTCGATAGCGAGCAT
GGCTTCAACAAGGCGGCAATCAAAGCCCTTCCTTTGTTTCTGACCTACCG
TCTTCCAGCCTTGCGAGGAAAACATGAACCGCCGTACCTCGAAAGTTTAT
GA

protein sequence of Gcaud7868.t2

>Gcaud7868.t2 ID=Gcaud7868.t2|Name=Gcaud7868.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=234bp
MNKVEIHPYAMSLVPGMTWIEAPNAERDHVKILYSLGKVLSGGLVATDST
TVVEQVIVPKLKALQESTDVRIEPFKTHITALIKSAGTLISLPLFISHPD
LNQVNILVGESGEVSDIVDWEGSSQLPFGMGFCRIHELAGMYINGNFHMP
QDFAAAETSCWEAVFNGVPDHIQESLRCNMGAVQTSVKIGTVLENLDSEH
GFNKAAIKALPLFLTYRLPALRGKHEPPYLESL*

mRNA from alignment at NODE_1238_length_12255_cov_4.374630:1653..2354+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7868.t2 ID=Gcaud7868.t2|Name=Gcaud7868.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=702bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:1653..2354+ (Gracilaria caudata M_176_S67 male)
ATGAACAAAGTTGAAATTCATCCTTACGCTATGTCGTTAGTTCCTGGGAT
GACTTGGATAGAGGCGCCGAATGCGGAGCGCGATCATGTCAAGATCCTCT
ATTCACTTGGGAAGGTTCTTTCCGGTGGCTTAGTTGCCACTGACAGCACG
ACAGTTGTCGAGCAGGTGATCGTACCGAAACTGAAAGCGCTTCAAGAGTC
GACAGACGTTCGCATTGAACCGTTCAAGACACACATCACAGCTCTGATTA
AGTCTGCGGGAACGCTAATAAGTCTTCCTCTGTTTATTTCGCACCCCGAT
CTCAACCAGGTGAACATTCTTGTCGGAGAAAGTGGAGAAGTATCTGATAT
TGTGGATTGGGAGGGCTCTTCACAACTACCGTTCGGTATGGGCTTCTGCA
GGATCCATGAACTAGCTGGGATGTACATCAATGGCAATTTTCACATGCCT
CAAGATTTTGCCGCTGCCGAAACGAGTTGCTGGGAAGCCGTCTTCAACGG
GGTGCCCGATCACATCCAGGAGTCTTTGCGTTGCAACATGGGAGCAGTAC
AGACGAGCGTCAAGATTGGAACTGTACTGGAAAACCTCGATAGCGAGCAT
GGCTTCAACAAGGCGGCAATCAAAGCCCTTCCTTTGTTTCTGACCTACCG
TCTTCCAGCCTTGCGAGGAAAACATGAACCGCCGTACCTCGAAAGTTTAT
GA

Coding sequence (CDS) from alignment at NODE_1238_length_12255_cov_4.374630:1653..2354+

>Gcaud7868.t2 ID=Gcaud7868.t2|Name=Gcaud7868.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=702bp|location=Sequence derived from alignment at NODE_1238_length_12255_cov_4.374630:1653..2354+ (Gracilaria caudata M_176_S67 male)
ATGAACAAAGTTGAAATTCATCCTTACGCTATGTCGTTAGTTCCTGGGAT
GACTTGGATAGAGGCGCCGAATGCGGAGCGCGATCATGTCAAGATCCTCT
ATTCACTTGGGAAGGTTCTTTCCGGTGGCTTAGTTGCCACTGACAGCACG
ACAGTTGTCGAGCAGGTGATCGTACCGAAACTGAAAGCGCTTCAAGAGTC
GACAGACGTTCGCATTGAACCGTTCAAGACACACATCACAGCTCTGATTA
AGTCTGCGGGAACGCTAATAAGTCTTCCTCTGTTTATTTCGCACCCCGAT
CTCAACCAGGTGAACATTCTTGTCGGAGAAAGTGGAGAAGTATCTGATAT
TGTGGATTGGGAGGGCTCTTCACAACTACCGTTCGGTATGGGCTTCTGCA
GGATCCATGAACTAGCTGGGATGTACATCAATGGCAATTTTCACATGCCT
CAAGATTTTGCCGCTGCCGAAACGAGTTGCTGGGAAGCCGTCTTCAACGG
GGTGCCCGATCACATCCAGGAGTCTTTGCGTTGCAACATGGGAGCAGTAC
AGACGAGCGTCAAGATTGGAACTGTACTGGAAAACCTCGATAGCGAGCAT
GGCTTCAACAAGGCGGCAATCAAAGCCCTTCCTTTGTTTCTGACCTACCG
TCTTCCAGCCTTGCGAGGAAAACATGAACCGCCGTACCTCGAAAGTTTAT
GA