Gcaud7861.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7861.t1
Unique NameGcaud7861.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_354_length_28917_cov_4.522861contigNODE_354_length_28917_cov_4.522861:14910..16716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7861Gcaud7861Gracilaria caudata M_176_S67 malegeneNODE_354_length_28917_cov_4.522861 14910..16716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7861.t1Gcaud7861.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_354_length_28917_cov_4.522861 14910..16716 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7861.t1.stop1Gcaud7861.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_354_length_28917_cov_4.522861 14910..14912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7861.t1.CDS1Gcaud7861.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_354_length_28917_cov_4.522861 14910..15020 -
Gcaud7861.t1.CDS2Gcaud7861.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_354_length_28917_cov_4.522861 15180..15259 -
Gcaud7861.t1.CDS3Gcaud7861.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_354_length_28917_cov_4.522861 15924..16716 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7861.t1.exon1Gcaud7861.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_354_length_28917_cov_4.522861 14910..15020 -
Gcaud7861.t1.exon2Gcaud7861.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_354_length_28917_cov_4.522861 15180..15259 -
Gcaud7861.t1.exon3Gcaud7861.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_354_length_28917_cov_4.522861 15924..16716 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7861.t1.intron1Gcaud7861.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_354_length_28917_cov_4.522861 15021..15179 -
Gcaud7861.t1.intron2Gcaud7861.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_354_length_28917_cov_4.522861 15260..15923 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7861.t1.start1Gcaud7861.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_354_length_28917_cov_4.522861 16714..16716 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7861.t1 ID=Gcaud7861.t1|Name=Gcaud7861.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=328bp
MFGFPGYHGSSSLRSMQSSSSRTSTYTQSTSTSSLPVTLSRSASVSCRRK
EPPSKYHTVILFLFALVLFSIAPTFRLTARAHANYTSIRIENGGTGSSSE
APSPVLGNEFNKAKVTTISALSVHRISEILFELIHNQELASLAVYPCHKH
IVILRSLSRLLNLESPQERVLIFCLDPSSARLAEAHRAIREEKYAFDIKF
IREDLVKNQPPKANIFVSIDDKDTLEAVSLEGLVKSVKESGSQVAVVNAS
PNKNANLDLDGDHQGLPFSEYERTVSSLYRGQLKGQLKGQYLYVGEERDQ
AVRDARRRLFSERVFTAAEWEQSLEVQ*
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spliced messenger RNA

>Gcaud7861.t1 ID=Gcaud7861.t1|Name=Gcaud7861.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=984bp|location=Sequence derived from alignment at NODE_354_length_28917_cov_4.522861:14910..16716- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGGCTTCCCAGGATATCATGGTTCCAGTTCACTAAGATCTATGCA
ATCCTCTTCGTCTCGAACTTCAACATATACTCAAAGCACGTCAACGTCCT
CTCTTCCTGTCACTCTCAGTCGCTCGGCATCTGTATCTTGCCGAAGAAAA
GAGCCACCAAGCAAGTATCACACTGTGATCTTATTTCTATTTGCGCTCGT
CTTGTTCTCTATTGCTCCTACTTTCCGTCTTACGGCTCGAGCACATGCCA
ACTACACCAGCATTAGAATAGAGAATGGGGGTACAGGTTCATCCTCAGAA
GCTCCTTCACCGGTGCTTGGAAATGAATTCAACAAGGCAAAAGTCACCAC
AATCTCTGCATTATCAGTTCATCGCATATCTGAAATATTGTTCGAGCTTA
TTCACAACCAGGAACTAGCATCCCTCGCAGTTTATCCCTGCCACAAACAC
ATAGTTATACTCAGGTCTCTTTCACGGTTGTTAAACTTGGAGTCTCCTCA
AGAGAGGGTATTGATTTTCTGCTTGGATCCTAGCTCTGCAAGACTTGCAG
AAGCCCACAGAGCTATTCGCGAGGAAAAATACGCATTCGACATCAAATTC
ATCAGGGAGGACTTGGTGAAGAATCAACCGCCAAAAGCAAATATATTCGT
CAGTATTGACGATAAAGACACCTTAGAGGCAGTCTCACTTGAGGGCCTTG
TGAAGTCCGTGAAAGAAAGTGGTAGTCAAGTTGCAGTTGTGAACGCCTCC
CCAAACAAGAATGCAAACTTAGATCTGGATGGCGACCACCAAGGGCTTCC
TTTTTCTGAGTACGAAAGGACAGTATCTTCTCTTTATCGTGGACAGTTGA
AAGGACAGTTGAAAGGACAATATCTCTATGTGGGTGAGGAGAGGGACCAG
GCCGTTCGCGACGCCAGGCGCCGTCTGTTCAGTGAAAGAGTGTTCACTGC
CGCTGAATGGGAGCAGTCCTTGGAAGTTCAATGA
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protein sequence of Gcaud7861.t1

>Gcaud7861.t1 ID=Gcaud7861.t1|Name=Gcaud7861.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=328bp
MFGFPGYHGSSSLRSMQSSSSRTSTYTQSTSTSSLPVTLSRSASVSCRRK
EPPSKYHTVILFLFALVLFSIAPTFRLTARAHANYTSIRIENGGTGSSSE
APSPVLGNEFNKAKVTTISALSVHRISEILFELIHNQELASLAVYPCHKH
IVILRSLSRLLNLESPQERVLIFCLDPSSARLAEAHRAIREEKYAFDIKF
IREDLVKNQPPKANIFVSIDDKDTLEAVSLEGLVKSVKESGSQVAVVNAS
PNKNANLDLDGDHQGLPFSEYERTVSSLYRGQLKGQLKGQYLYVGEERDQ
AVRDARRRLFSERVFTAAEWEQSLEVQ*
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mRNA from alignment at NODE_354_length_28917_cov_4.522861:14910..16716-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7861.t1 ID=Gcaud7861.t1|Name=Gcaud7861.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1807bp|location=Sequence derived from alignment at NODE_354_length_28917_cov_4.522861:14910..16716- (Gracilaria caudata M_176_S67 male)
ATGTTTGGCTTCCCAGGATATCATGGTTCCAGTTCACTAAGATCTATGCA
ATCCTCTTCGTCTCGAACTTCAACATATACTCAAAGCACGTCAACGTCCT
CTCTTCCTGTCACTCTCAGTCGCTCGGCATCTGTATCTTGCCGAAGAAAA
GAGCCACCAAGCAAGTATCACACTGTGATCTTATTTCTATTTGCGCTCGT
CTTGTTCTCTATTGCTCCTACTTTCCGTCTTACGGCTCGAGCACATGCCA
ACTACACCAGCATTAGAATAGAGAATGGGGGTACAGGTTCATCCTCAGAA
GCTCCTTCACCGGTGCTTGGAAATGAATTCAACAAGGCAAAAGTCACCAC
AATCTCTGCATTATCAGTTCATCGCATATCTGAAATATTGTTCGAGCTTA
TTCACAACCAGGAACTAGCATCCCTCGCAGTTTATCCCTGCCACAAACAC
ATAGTTATACTCAGGTCTCTTTCACGGTTGTTAAACTTGGAGTCTCCTCA
AGAGAGGGTATTGATTTTCTGCTTGGATCCTAGCTCTGCAAGACTTGCAG
AAGCCCACAGAGCTATTCGCGAGGAAAAATACGCATTCGACATCAAATTC
ATCAGGGAGGACTTGGTGAAGAATCAACCGCCAAAAGCAAATATATTCGT
CAGTATTGACGATAAAGACACCTTAGAGGCAGTCTCACTTGAGGGCCTTG
TGAAGTCCGTGAAAGAAAGTGGTAGTCAAGTTGCAGTTGTGAACGCCTCC
CCAAACAAGAATGCAAACTTAGATCTGGATGGCGACCACCAAGGTGCATC
TTTTCCCCTCGCAGATCACATACAACTTATCAAGCCTCTGGAGCATGGAT
TTGTTGTCGTATACGATCTGCTTAATATGACTGAGCACTGAAGTGATACA
GAAAAGACACCAACGACCGAAACTATTTTGTAACCAAGCTCTCTATGGCA
TTGTGAAAAAAAGCCGGATGTGAAATGTGGACAGAAGTACTGACGGTCCT
ACGCGAGGTATTTGTTCCAAGTCAGACATGTTTGTCTCGTCCTGCCAGAG
TTCAGAAGGCTATCTTACTAGCGGTATGCCCTCGTTCTTGGTGAAGGTCG
CAGCGTTCTCTTCGATGCCCGTGCGCCGCCCCAAGCGACCCATTCGCAGC
AATACCAAGGTTCTGTAATACCACACGACCAAGGTTCTGTAACACTGACG
ATCCCATTTAGGTTGCCCACAATGATTCGTGTAAGAGTTGGATTCGATTC
TACCTCTCAATAAACACCGCGTTTCTCTACCGCGTCTGCAAAAGGCTCCT
GGTCGTTTCTGTTTTCCTCTCCCGACAGTGAAGAATGCCGCCGGTTCAAA
CACTTCGCCACGAACTTAACTCGGAATTGCTGAACAGCTGAGCGCCGGAG
GAAGTTTGGGGGTTCAGAACTAGGAGAAGCAAGCACTTTCCTATCATCCT
TTTCAAGGGCTTCCTTTTTCTGAGTACGAAAGGACAGTATCTTCTCTTTA
TCGTGGACAGTTGAAAGGACAGTTGAAAGGACAATATGTAAGTTATGATC
CGAAAACCCTAATGATGTGTTGACTTCAACATTCCGTCCAAAAAGCTGGT
GATCACCTTGAATAAAGTGTTAAACTGCTTGAATGTGATGCCTACTCATG
ATGATCCACTCAGAACCCGATCTAACTGCGTGGGACGAGAAAAAAGCTCT
ATGTGGGTGAGGAGAGGGACCAGGCCGTTCGCGACGCCAGGCGCCGTCTG
TTCAGTGAAAGAGTGTTCACTGCCGCTGAATGGGAGCAGTCCTTGGAAGT
TCAATGA
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Coding sequence (CDS) from alignment at NODE_354_length_28917_cov_4.522861:14910..16716-

>Gcaud7861.t1 ID=Gcaud7861.t1|Name=Gcaud7861.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=984bp|location=Sequence derived from alignment at NODE_354_length_28917_cov_4.522861:14910..16716- (Gracilaria caudata M_176_S67 male)
ATGTTTGGCTTCCCAGGATATCATGGTTCCAGTTCACTAAGATCTATGCA
ATCCTCTTCGTCTCGAACTTCAACATATACTCAAAGCACGTCAACGTCCT
CTCTTCCTGTCACTCTCAGTCGCTCGGCATCTGTATCTTGCCGAAGAAAA
GAGCCACCAAGCAAGTATCACACTGTGATCTTATTTCTATTTGCGCTCGT
CTTGTTCTCTATTGCTCCTACTTTCCGTCTTACGGCTCGAGCACATGCCA
ACTACACCAGCATTAGAATAGAGAATGGGGGTACAGGTTCATCCTCAGAA
GCTCCTTCACCGGTGCTTGGAAATGAATTCAACAAGGCAAAAGTCACCAC
AATCTCTGCATTATCAGTTCATCGCATATCTGAAATATTGTTCGAGCTTA
TTCACAACCAGGAACTAGCATCCCTCGCAGTTTATCCCTGCCACAAACAC
ATAGTTATACTCAGGTCTCTTTCACGGTTGTTAAACTTGGAGTCTCCTCA
AGAGAGGGTATTGATTTTCTGCTTGGATCCTAGCTCTGCAAGACTTGCAG
AAGCCCACAGAGCTATTCGCGAGGAAAAATACGCATTCGACATCAAATTC
ATCAGGGAGGACTTGGTGAAGAATCAACCGCCAAAAGCAAATATATTCGT
CAGTATTGACGATAAAGACACCTTAGAGGCAGTCTCACTTGAGGGCCTTG
TGAAGTCCGTGAAAGAAAGTGGTAGTCAAGTTGCAGTTGTGAACGCCTCC
CCAAACAAGAATGCAAACTTAGATCTGGATGGCGACCACCAAGGGCTTCC
TTTTTCTGAGTACGAAAGGACAGTATCTTCTCTTTATCGTGGACAGTTGA
AAGGACAGTTGAAAGGACAATATCTCTATGTGGGTGAGGAGAGGGACCAG
GCCGTTCGCGACGCCAGGCGCCGTCTGTTCAGTGAAAGAGTGTTCACTGC
CGCTGAATGGGAGCAGTCCTTGGAAGTTCAATGA
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