Gcaud7854.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7854.t1
Unique Name	Gcaud7854.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	231

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_354_length_28917_cov_4.522861	contig	NODE_354_length_28917_cov_4.522861:2..692 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7854	Gcaud7854	Gracilaria caudata M_176_S67 male	gene	NODE_354_length_28917_cov_4.522861 2..692 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7854.t1.CDS1	Gcaud7854.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_354_length_28917_cov_4.522861 2..692 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7854.t1.exon1	Gcaud7854.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_354_length_28917_cov_4.522861 2..692 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7854.t1.start1	Gcaud7854.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_354_length_28917_cov_4.522861 690..692 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7854.t1	Gcaud7854.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_354_length_28917_cov_4.522861 2..692 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_354_length_28917_cov_4.522861:2..692-
coding sequence from alignment at NODE_354_length_28917_cov_4.522861:2..692-

mRNA sequence

>Gcaud7854.t1 ID=Gcaud7854.t1|Name=Gcaud7854.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=231bp
MQRYNIAQLQRQLENLEDHNDSEAQKLYNNLGLAYLQARRYRHALNAHRR
EKAACKRLVDSNPDNLQYRLDLAIAYHRCGDVMLKLDRLVDAHENLISDK
ADVVRAAHKQHRHALQIARAIDSAPASLERHAASAAIAHSALALAMETKR
VSAFAHAAQCCIRAARLIDCIDPDTSGTFPVDSNGMTHGLAVNFAIALSG
MGEKKKAKTMLHSVVLNAKRVNDMPNFVRAX

spliced messenger RNA

>Gcaud7854.t1 ID=Gcaud7854.t1|Name=Gcaud7854.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=691bp|location=Sequence derived from alignment at NODE_354_length_28917_cov_4.522861:2..692- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACGCTACAACATTGCGCAGCTGCAACGCCAGCTGGAGAACCTCGA
GGACCACAACGACTCCGAAGCTCAGAAGCTCTACAACAACCTTGGCCTCG
CTTACCTGCAGGCTCGTCGCTACCGCCATGCGCTCAACGCTCACCGCCGC
GAGAAAGCCGCCTGCAAGCGACTCGTCGACTCCAATCCCGACAACTTGCA
GTACAGACTTGATCTCGCCATAGCGTATCATCGCTGCGGCGACGTCATGC
TCAAGCTGGATCGTCTTGTTGATGCACATGAGAACCTCATCAGTGACAAG
GCCGACGTCGTACGAGCTGCGCATAAGCAGCACAGACATGCCTTGCAGAT
TGCGCGCGCCATCGATTCCGCTCCGGCCTCCCTGGAACGCCACGCTGCCT
CCGCCGCAATCGCACACAGCGCACTGGCCCTCGCCATGGAGACGAAACGC
GTTTCTGCGTTTGCACATGCTGCTCAGTGCTGCATACGCGCTGCCCGGCT
CATAGATTGCATCGACCCCGATACCAGTGGTACATTTCCCGTGGACAGCA
ACGGAATGACGCATGGTCTAGCTGTCAACTTTGCCATTGCCCTCAGTGGT
ATGGGCGAGAAAAAGAAGGCTAAAACCATGTTGCATTCCGTTGTTCTAAA
CGCAAAACGTGTCAACGACATGCCCAACTTTGTGAGAGCAA

protein sequence of Gcaud7854.t1

>Gcaud7854.t1 ID=Gcaud7854.t1|Name=Gcaud7854.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=231bp
MQRYNIAQLQRQLENLEDHNDSEAQKLYNNLGLAYLQARRYRHALNAHRR
EKAACKRLVDSNPDNLQYRLDLAIAYHRCGDVMLKLDRLVDAHENLISDK
ADVVRAAHKQHRHALQIARAIDSAPASLERHAASAAIAHSALALAMETKR
VSAFAHAAQCCIRAARLIDCIDPDTSGTFPVDSNGMTHGLAVNFAIALSG
MGEKKKAKTMLHSVVLNAKRVNDMPNFVRAX

mRNA from alignment at NODE_354_length_28917_cov_4.522861:2..692-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7854.t1 ID=Gcaud7854.t1|Name=Gcaud7854.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=691bp|location=Sequence derived from alignment at NODE_354_length_28917_cov_4.522861:2..692- (Gracilaria caudata M_176_S67 male)
ATGCAACGCTACAACATTGCGCAGCTGCAACGCCAGCTGGAGAACCTCGA
GGACCACAACGACTCCGAAGCTCAGAAGCTCTACAACAACCTTGGCCTCG
CTTACCTGCAGGCTCGTCGCTACCGCCATGCGCTCAACGCTCACCGCCGC
GAGAAAGCCGCCTGCAAGCGACTCGTCGACTCCAATCCCGACAACTTGCA
GTACAGACTTGATCTCGCCATAGCGTATCATCGCTGCGGCGACGTCATGC
TCAAGCTGGATCGTCTTGTTGATGCACATGAGAACCTCATCAGTGACAAG
GCCGACGTCGTACGAGCTGCGCATAAGCAGCACAGACATGCCTTGCAGAT
TGCGCGCGCCATCGATTCCGCTCCGGCCTCCCTGGAACGCCACGCTGCCT
CCGCCGCAATCGCACACAGCGCACTGGCCCTCGCCATGGAGACGAAACGC
GTTTCTGCGTTTGCACATGCTGCTCAGTGCTGCATACGCGCTGCCCGGCT
CATAGATTGCATCGACCCCGATACCAGTGGTACATTTCCCGTGGACAGCA
ACGGAATGACGCATGGTCTAGCTGTCAACTTTGCCATTGCCCTCAGTGGT
ATGGGCGAGAAAAAGAAGGCTAAAACCATGTTGCATTCCGTTGTTCTAAA
CGCAAAACGTGTCAACGACATGCCCAACTTTGTGAGAGCAA

Coding sequence (CDS) from alignment at NODE_354_length_28917_cov_4.522861:2..692-

>Gcaud7854.t1 ID=Gcaud7854.t1|Name=Gcaud7854.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=691bp|location=Sequence derived from alignment at NODE_354_length_28917_cov_4.522861:2..692- (Gracilaria caudata M_176_S67 male)
ATGCAACGCTACAACATTGCGCAGCTGCAACGCCAGCTGGAGAACCTCGA
GGACCACAACGACTCCGAAGCTCAGAAGCTCTACAACAACCTTGGCCTCG
CTTACCTGCAGGCTCGTCGCTACCGCCATGCGCTCAACGCTCACCGCCGC
GAGAAAGCCGCCTGCAAGCGACTCGTCGACTCCAATCCCGACAACTTGCA
GTACAGACTTGATCTCGCCATAGCGTATCATCGCTGCGGCGACGTCATGC
TCAAGCTGGATCGTCTTGTTGATGCACATGAGAACCTCATCAGTGACAAG
GCCGACGTCGTACGAGCTGCGCATAAGCAGCACAGACATGCCTTGCAGAT
TGCGCGCGCCATCGATTCCGCTCCGGCCTCCCTGGAACGCCACGCTGCCT
CCGCCGCAATCGCACACAGCGCACTGGCCCTCGCCATGGAGACGAAACGC
GTTTCTGCGTTTGCACATGCTGCTCAGTGCTGCATACGCGCTGCCCGGCT
CATAGATTGCATCGACCCCGATACCAGTGGTACATTTCCCGTGGACAGCA
ACGGAATGACGCATGGTCTAGCTGTCAACTTTGCCATTGCCCTCAGTGGT
ATGGGCGAGAAAAAGAAGGCTAAAACCATGTTGCATTCCGTTGTTCTAAA
CGCAAAACGTGTCAACGACATGCCCAACTTTGTGAGAGCAA