Gcaud7845.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7845.t1
Unique Name	Gcaud7845.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	560

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1749_length_8627_cov_183.782334	contig	NODE_1749_length_8627_cov_183.782334:566..2245 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705015.1
Preferred name	dnaK
PFAMs	HSP70
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03283
KEGG TC	1.A.33.1
KEGG Pathway	ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG Module	M00353,M00355
GOs	GO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006605,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008144,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0010035,GO:0010038,GO:0015031,GO:0015833,GO:0017076,GO:0030554,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042221,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045184,GO:0046686,GO:0046907,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072596,GO:0072598,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue	3.5e-292
EggNOG OGs	COG0443@1\|root,KOG0102@2759\|Eukaryota
Description	unfolded protein binding
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7845	Gcaud7845	Gracilaria caudata M_176_S67 male	gene	NODE_1749_length_8627_cov_183.782334 566..2245 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7845.t1.stop1	Gcaud7845.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1749_length_8627_cov_183.782334 566..568 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7845.t1.CDS1	Gcaud7845.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1749_length_8627_cov_183.782334 566..2245 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7845.t1.exon1	Gcaud7845.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1749_length_8627_cov_183.782334 566..2245 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7845.t1.start1	Gcaud7845.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1749_length_8627_cov_183.782334 2243..2245 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7845.t1	Gcaud7845.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1749_length_8627_cov_183.782334 566..2245 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1749_length_8627_cov_183.782334:566..2245-
coding sequence from alignment at NODE_1749_length_8627_cov_183.782334:566..2245-

mRNA sequence

>Gcaud7845.t1 ID=Gcaud7845.t1|Name=Gcaud7845.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=560bp
MNPENTFYSVKRFIGRKKDELVNELQQSSYNVKTDINSNIKLECPALGKD
FAPEEISAQVLRKLVEDASAYLGQQVTQAVITVPAYFNDSQRQATKDAGQ
IAGLDVLRIINEPTAASLSYGLDKKSNETILVFDLGGGTFDVSILEVGDG
VFEVLSTSGDTHLGGDDFDRKIVDWLINEFNNDERIDLGKDRQALQRLTE
AAEKAKMELSSLSQTDINLPFITSTDTGPKHLEKNITRAKFEYLCQDLIN
RCEVPVNNALKDAQLSSDDIDEIVLVGGSTRIPAIKELVQKMIGKDPNQS
VNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIAR
NTTVPTKKSEIFSTAVDNQPNVEIHVLQGEREFTKDNKSLGTFRLDGIMP
APRGVPQIEVIFDIDANGILSVKAKDKGTGKEQSITITGASTLPKEEVEK
LVKEAEENSELDKQKREQIDLKNQADALCYQSQNQLDEFKDKISEDEKQR
IQKLIDSLKLFIKEDNYEQIENLKNQLQQAMMNIGKQVYSSKQQESTDDS
VIDTNSKEA*

spliced messenger RNA

>Gcaud7845.t1 ID=Gcaud7845.t1|Name=Gcaud7845.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at NODE_1749_length_8627_cov_183.782334:566..2245- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCAGAAAATACTTTTTATTCCGTTAAAAGATTTATTGGTCGCAA
AAAAGATGAATTAGTAAATGAATTACAGCAGTCATCTTATAATGTAAAGA
CAGATATTAATTCTAATATTAAATTAGAGTGTCCAGCACTAGGCAAAGAT
TTTGCTCCTGAAGAAATTTCTGCTCAAGTCTTACGTAAATTGGTTGAAGA
TGCTAGCGCTTATTTAGGTCAACAAGTGACTCAAGCAGTTATAACTGTTC
CAGCTTATTTTAATGATTCGCAGCGTCAAGCCACGAAAGATGCAGGACAA
ATTGCTGGTTTAGATGTTTTAAGAATTATTAATGAACCTACAGCAGCATC
CTTATCATATGGTCTAGATAAGAAAAGCAATGAAACTATTCTGGTATTTG
ATCTTGGCGGAGGTACATTTGATGTATCTATTTTAGAAGTAGGTGATGGA
GTTTTTGAGGTTCTATCAACATCTGGAGATACTCATTTAGGAGGTGATGA
TTTTGATAGAAAAATTGTTGATTGGTTAATTAATGAGTTTAATAATGATG
AGAGAATTGATTTAGGTAAGGACAGACAAGCTTTACAACGATTAACAGAG
GCAGCTGAAAAAGCTAAAATGGAGTTATCTAGTTTATCACAAACTGATAT
TAATTTGCCTTTTATTACTTCTACTGACACAGGTCCGAAACATTTAGAGA
AAAATATAACTAGAGCAAAGTTTGAGTATTTATGTCAAGATTTAATTAAT
CGTTGTGAGGTACCTGTTAATAATGCATTAAAAGATGCTCAACTATCCTC
AGATGATATAGACGAAATTGTTTTAGTTGGTGGTTCTACAAGAATTCCCG
CTATTAAAGAATTAGTTCAAAAAATGATAGGTAAAGATCCAAACCAGAGT
GTAAATCCTGATGAAGTAGTTGCAATTGGAGCAGCCGTTCAGGCTGGTGT
TTTAGCAGGTGAAGTAAAAGATATACTATTGCTTGATGTGACTCCTTTAT
CTTTAGGAGTTGAAACCCTTGGAGGAGTAATGACTAAAATAATAGCTCGT
AATACAACAGTGCCTACCAAGAAATCTGAAATTTTTTCAACAGCTGTTGA
TAATCAGCCTAATGTTGAAATTCATGTTTTGCAAGGAGAGAGAGAATTTA
CTAAAGATAATAAAAGTTTAGGTACTTTTAGATTAGATGGTATTATGCCT
GCACCCCGAGGTGTACCTCAAATAGAAGTTATATTTGATATAGATGCAAA
TGGTATATTATCTGTAAAAGCCAAAGACAAAGGAACTGGTAAAGAACAAT
CTATTACTATAACAGGTGCATCTACATTACCTAAAGAAGAAGTTGAGAAG
CTAGTCAAAGAGGCAGAAGAAAATTCAGAGCTTGATAAACAGAAACGTGA
ACAAATAGATTTAAAAAATCAGGCGGATGCTTTATGTTACCAGTCTCAGA
ATCAACTTGATGAGTTTAAAGATAAAATTAGTGAGGATGAAAAGCAAAGA
ATTCAAAAACTTATAGATTCCTTAAAATTATTTATTAAAGAAGATAATTA
TGAGCAAATTGAAAATCTGAAGAATCAGTTACAGCAAGCAATGATGAATA
TAGGTAAGCAAGTTTACAGTTCTAAACAACAAGAATCAACGGATGACTCT
GTTATAGACACTAATTCTAAAGAGGCATAA

protein sequence of Gcaud7845.t1

>Gcaud7845.t1 ID=Gcaud7845.t1|Name=Gcaud7845.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=560bp
MNPENTFYSVKRFIGRKKDELVNELQQSSYNVKTDINSNIKLECPALGKD
FAPEEISAQVLRKLVEDASAYLGQQVTQAVITVPAYFNDSQRQATKDAGQ
IAGLDVLRIINEPTAASLSYGLDKKSNETILVFDLGGGTFDVSILEVGDG
VFEVLSTSGDTHLGGDDFDRKIVDWLINEFNNDERIDLGKDRQALQRLTE
AAEKAKMELSSLSQTDINLPFITSTDTGPKHLEKNITRAKFEYLCQDLIN
RCEVPVNNALKDAQLSSDDIDEIVLVGGSTRIPAIKELVQKMIGKDPNQS
VNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIAR
NTTVPTKKSEIFSTAVDNQPNVEIHVLQGEREFTKDNKSLGTFRLDGIMP
APRGVPQIEVIFDIDANGILSVKAKDKGTGKEQSITITGASTLPKEEVEK
LVKEAEENSELDKQKREQIDLKNQADALCYQSQNQLDEFKDKISEDEKQR
IQKLIDSLKLFIKEDNYEQIENLKNQLQQAMMNIGKQVYSSKQQESTDDS
VIDTNSKEA*

mRNA from alignment at NODE_1749_length_8627_cov_183.782334:566..2245-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7845.t1 ID=Gcaud7845.t1|Name=Gcaud7845.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at NODE_1749_length_8627_cov_183.782334:566..2245- (Gracilaria caudata M_176_S67 male)
ATGAATCCAGAAAATACTTTTTATTCCGTTAAAAGATTTATTGGTCGCAA
AAAAGATGAATTAGTAAATGAATTACAGCAGTCATCTTATAATGTAAAGA
CAGATATTAATTCTAATATTAAATTAGAGTGTCCAGCACTAGGCAAAGAT
TTTGCTCCTGAAGAAATTTCTGCTCAAGTCTTACGTAAATTGGTTGAAGA
TGCTAGCGCTTATTTAGGTCAACAAGTGACTCAAGCAGTTATAACTGTTC
CAGCTTATTTTAATGATTCGCAGCGTCAAGCCACGAAAGATGCAGGACAA
ATTGCTGGTTTAGATGTTTTAAGAATTATTAATGAACCTACAGCAGCATC
CTTATCATATGGTCTAGATAAGAAAAGCAATGAAACTATTCTGGTATTTG
ATCTTGGCGGAGGTACATTTGATGTATCTATTTTAGAAGTAGGTGATGGA
GTTTTTGAGGTTCTATCAACATCTGGAGATACTCATTTAGGAGGTGATGA
TTTTGATAGAAAAATTGTTGATTGGTTAATTAATGAGTTTAATAATGATG
AGAGAATTGATTTAGGTAAGGACAGACAAGCTTTACAACGATTAACAGAG
GCAGCTGAAAAAGCTAAAATGGAGTTATCTAGTTTATCACAAACTGATAT
TAATTTGCCTTTTATTACTTCTACTGACACAGGTCCGAAACATTTAGAGA
AAAATATAACTAGAGCAAAGTTTGAGTATTTATGTCAAGATTTAATTAAT
CGTTGTGAGGTACCTGTTAATAATGCATTAAAAGATGCTCAACTATCCTC
AGATGATATAGACGAAATTGTTTTAGTTGGTGGTTCTACAAGAATTCCCG
CTATTAAAGAATTAGTTCAAAAAATGATAGGTAAAGATCCAAACCAGAGT
GTAAATCCTGATGAAGTAGTTGCAATTGGAGCAGCCGTTCAGGCTGGTGT
TTTAGCAGGTGAAGTAAAAGATATACTATTGCTTGATGTGACTCCTTTAT
CTTTAGGAGTTGAAACCCTTGGAGGAGTAATGACTAAAATAATAGCTCGT
AATACAACAGTGCCTACCAAGAAATCTGAAATTTTTTCAACAGCTGTTGA
TAATCAGCCTAATGTTGAAATTCATGTTTTGCAAGGAGAGAGAGAATTTA
CTAAAGATAATAAAAGTTTAGGTACTTTTAGATTAGATGGTATTATGCCT
GCACCCCGAGGTGTACCTCAAATAGAAGTTATATTTGATATAGATGCAAA
TGGTATATTATCTGTAAAAGCCAAAGACAAAGGAACTGGTAAAGAACAAT
CTATTACTATAACAGGTGCATCTACATTACCTAAAGAAGAAGTTGAGAAG
CTAGTCAAAGAGGCAGAAGAAAATTCAGAGCTTGATAAACAGAAACGTGA
ACAAATAGATTTAAAAAATCAGGCGGATGCTTTATGTTACCAGTCTCAGA
ATCAACTTGATGAGTTTAAAGATAAAATTAGTGAGGATGAAAAGCAAAGA
ATTCAAAAACTTATAGATTCCTTAAAATTATTTATTAAAGAAGATAATTA
TGAGCAAATTGAAAATCTGAAGAATCAGTTACAGCAAGCAATGATGAATA
TAGGTAAGCAAGTTTACAGTTCTAAACAACAAGAATCAACGGATGACTCT
GTTATAGACACTAATTCTAAAGAGGCATAA

Coding sequence (CDS) from alignment at NODE_1749_length_8627_cov_183.782334:566..2245-

>Gcaud7845.t1 ID=Gcaud7845.t1|Name=Gcaud7845.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1680bp|location=Sequence derived from alignment at NODE_1749_length_8627_cov_183.782334:566..2245- (Gracilaria caudata M_176_S67 male)
ATGAATCCAGAAAATACTTTTTATTCCGTTAAAAGATTTATTGGTCGCAA
AAAAGATGAATTAGTAAATGAATTACAGCAGTCATCTTATAATGTAAAGA
CAGATATTAATTCTAATATTAAATTAGAGTGTCCAGCACTAGGCAAAGAT
TTTGCTCCTGAAGAAATTTCTGCTCAAGTCTTACGTAAATTGGTTGAAGA
TGCTAGCGCTTATTTAGGTCAACAAGTGACTCAAGCAGTTATAACTGTTC
CAGCTTATTTTAATGATTCGCAGCGTCAAGCCACGAAAGATGCAGGACAA
ATTGCTGGTTTAGATGTTTTAAGAATTATTAATGAACCTACAGCAGCATC
CTTATCATATGGTCTAGATAAGAAAAGCAATGAAACTATTCTGGTATTTG
ATCTTGGCGGAGGTACATTTGATGTATCTATTTTAGAAGTAGGTGATGGA
GTTTTTGAGGTTCTATCAACATCTGGAGATACTCATTTAGGAGGTGATGA
TTTTGATAGAAAAATTGTTGATTGGTTAATTAATGAGTTTAATAATGATG
AGAGAATTGATTTAGGTAAGGACAGACAAGCTTTACAACGATTAACAGAG
GCAGCTGAAAAAGCTAAAATGGAGTTATCTAGTTTATCACAAACTGATAT
TAATTTGCCTTTTATTACTTCTACTGACACAGGTCCGAAACATTTAGAGA
AAAATATAACTAGAGCAAAGTTTGAGTATTTATGTCAAGATTTAATTAAT
CGTTGTGAGGTACCTGTTAATAATGCATTAAAAGATGCTCAACTATCCTC
AGATGATATAGACGAAATTGTTTTAGTTGGTGGTTCTACAAGAATTCCCG
CTATTAAAGAATTAGTTCAAAAAATGATAGGTAAAGATCCAAACCAGAGT
GTAAATCCTGATGAAGTAGTTGCAATTGGAGCAGCCGTTCAGGCTGGTGT
TTTAGCAGGTGAAGTAAAAGATATACTATTGCTTGATGTGACTCCTTTAT
CTTTAGGAGTTGAAACCCTTGGAGGAGTAATGACTAAAATAATAGCTCGT
AATACAACAGTGCCTACCAAGAAATCTGAAATTTTTTCAACAGCTGTTGA
TAATCAGCCTAATGTTGAAATTCATGTTTTGCAAGGAGAGAGAGAATTTA
CTAAAGATAATAAAAGTTTAGGTACTTTTAGATTAGATGGTATTATGCCT
GCACCCCGAGGTGTACCTCAAATAGAAGTTATATTTGATATAGATGCAAA
TGGTATATTATCTGTAAAAGCCAAAGACAAAGGAACTGGTAAAGAACAAT
CTATTACTATAACAGGTGCATCTACATTACCTAAAGAAGAAGTTGAGAAG
CTAGTCAAAGAGGCAGAAGAAAATTCAGAGCTTGATAAACAGAAACGTGA
ACAAATAGATTTAAAAAATCAGGCGGATGCTTTATGTTACCAGTCTCAGA
ATCAACTTGATGAGTTTAAAGATAAAATTAGTGAGGATGAAAAGCAAAGA
ATTCAAAAACTTATAGATTCCTTAAAATTATTTATTAAAGAAGATAATTA
TGAGCAAATTGAAAATCTGAAGAATCAGTTACAGCAAGCAATGATGAATA
TAGGTAAGCAAGTTTACAGTTCTAAACAACAAGAATCAACGGATGACTCT
GTTATAGACACTAATTCTAAAGAGGCATAA