Gcaud7843.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7843.t1
Unique NameGcaud7843.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_647_length_20364_cov_4.929216contigNODE_647_length_20364_cov_4.929216:8346..11917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG004CT
Preferred nameATP5O
PFAMsOSCP
Max annot lvl2759|Eukaryota
KEGG koko:K02113,ko:K02137
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158
GOsGO:0000274,GO:0000275,GO:0000276,GO:0003674,GO:0003824,GO:0005198,GO:0005215,GO:0005488,GO:0005496,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005756,GO:0005886,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0008289,GO:0008340,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009536,GO:0009987,GO:0010259,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033177,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0042407,GO:0042776,GO:0043167,GO:0043169,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045259,GO:0045261,GO:0045263,GO:0045265,GO:0045269,GO:0046034,GO:0046390,GO:0046483,GO:0046872,GO:0046907,GO:0046914,GO:0048856,GO:0050897,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0061024,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1990542
Evalue1.47e-38
EggNOG OGsCOG0712@1|root,KOG1662@2759|Eukaryota
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7843Gcaud7843Gracilaria caudata M_176_S67 malegeneNODE_647_length_20364_cov_4.929216 8346..11917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7843.t1Gcaud7843.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_647_length_20364_cov_4.929216 8346..11917 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7843.t1.start1Gcaud7843.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_647_length_20364_cov_4.929216 8346..8348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7843.t1.CDS1Gcaud7843.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_647_length_20364_cov_4.929216 8346..8539 +
Gcaud7843.t1.CDS2Gcaud7843.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_647_length_20364_cov_4.929216 8649..8830 +
Gcaud7843.t1.CDS3Gcaud7843.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_647_length_20364_cov_4.929216 11277..11917 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7843.t1.exon1Gcaud7843.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_647_length_20364_cov_4.929216 8346..8539 +
Gcaud7843.t1.exon2Gcaud7843.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_647_length_20364_cov_4.929216 8649..8830 +
Gcaud7843.t1.exon3Gcaud7843.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_647_length_20364_cov_4.929216 11277..11917 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7843.t1.intron1Gcaud7843.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_647_length_20364_cov_4.929216 8540..8648 +
Gcaud7843.t1.intron2Gcaud7843.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_647_length_20364_cov_4.929216 8831..11276 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7843.t1.stop1Gcaud7843.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_647_length_20364_cov_4.929216 11915..11917 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7843.t1 ID=Gcaud7843.t1|Name=Gcaud7843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=339bp
MAHTLASEKALALRESEELHISIIDPDQEEQILRKREELTHLRGGRGILQ
NLGSTSPTLRKRNRSTTRLPEPPSRRLRTGLQSKVDLHAADKKSSPLDML
TDDLLIEIFKHLPRFPHLLRIRQVCLSQRVPRAGNSFWLRTFSAEASGVE
QLPKAVDTAGRYAYALYNAAKKSNSLDAVITDVTTMQDMVAKNTTLSEFL
INPSLPRTAKVEAITEIVKKSGFSDTFSKFLMVMSENGRTSEASKALASF
QDIIGALKGEVVVKVTTTMPLSEWELALLKKKIKQRFFAGKPDAELTVET
AIDEELLGGLTIQVGDRFMDLSTRTELRKLQEVIAQAV*
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spliced messenger RNA

>Gcaud7843.t1 ID=Gcaud7843.t1|Name=Gcaud7843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at NODE_647_length_20364_cov_4.929216:8346..11917+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCATACCTTAGCCAGCGAGAAGGCACTCGCCTTGCGCGAATCAGA
AGAGCTGCATATCTCCATCATCGATCCCGACCAAGAGGAGCAGATTCTGC
GAAAACGCGAGGAGCTCACGCACTTGCGGGGCGGACGCGGAATTCTGCAG
AACTTGGGCTCCACCTCACCTACGCTTAGAAAGCGTAACAGAAGTACAAC
ACGACTTCCCGAGCCACCGTCAAGGCGCTTACGCACGGGACTACAATCAA
AAGTAGACCTGCATGCTGCCGACAAGAAAAGCAGTCCATTGGACATGCTG
ACAGATGATCTCTTGATTGAGATATTCAAGCACCTACCGCGTTTTCCACA
TTTACTGCGCATCCGGCAGGTCTGCCTCTCCCAAAGAGTACCTCGCGCGG
GAAACTCGTTTTGGCTTCGAACTTTCTCTGCTGAAGCGTCGGGAGTGGAA
CAACTGCCTAAGGCTGTCGACACTGCGGGAAGATATGCCTATGCACTTTA
CAATGCAGCGAAGAAGTCCAATTCCCTCGATGCGGTCATAACCGATGTAA
CTACCATGCAAGACATGGTTGCCAAGAATACTACTTTGAGCGAGTTTCTC
ATCAACCCATCACTCCCGCGCACGGCCAAGGTTGAAGCTATCACTGAGAT
CGTCAAAAAATCCGGTTTCTCCGATACCTTCTCCAAGTTTTTGATGGTTA
TGTCCGAAAACGGGCGGACCTCGGAAGCCTCGAAAGCCCTTGCATCCTTT
CAGGACATTATTGGAGCCCTGAAAGGCGAAGTTGTTGTTAAGGTTACTAC
CACAATGCCGTTATCGGAGTGGGAGCTTGCGCTCCTCAAGAAGAAGATTA
AGCAGAGGTTCTTCGCGGGAAAGCCCGATGCGGAACTAACTGTCGAAACT
GCGATTGATGAGGAGCTTCTCGGTGGTCTAACCATTCAAGTGGGGGATCG
TTTCATGGACCTCTCTACCCGTACAGAGCTTCGTAAGTTGCAAGAAGTTA
TAGCACAGGCGGTGTAA
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protein sequence of Gcaud7843.t1

>Gcaud7843.t1 ID=Gcaud7843.t1|Name=Gcaud7843.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=339bp
MAHTLASEKALALRESEELHISIIDPDQEEQILRKREELTHLRGGRGILQ
NLGSTSPTLRKRNRSTTRLPEPPSRRLRTGLQSKVDLHAADKKSSPLDML
TDDLLIEIFKHLPRFPHLLRIRQVCLSQRVPRAGNSFWLRTFSAEASGVE
QLPKAVDTAGRYAYALYNAAKKSNSLDAVITDVTTMQDMVAKNTTLSEFL
INPSLPRTAKVEAITEIVKKSGFSDTFSKFLMVMSENGRTSEASKALASF
QDIIGALKGEVVVKVTTTMPLSEWELALLKKKIKQRFFAGKPDAELTVET
AIDEELLGGLTIQVGDRFMDLSTRTELRKLQEVIAQAV*
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mRNA from alignment at NODE_647_length_20364_cov_4.929216:8346..11917+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7843.t1 ID=Gcaud7843.t1|Name=Gcaud7843.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3572bp|location=Sequence derived from alignment at NODE_647_length_20364_cov_4.929216:8346..11917+ (Gracilaria caudata M_176_S67 male)
ATGGCCCATACCTTAGCCAGCGAGAAGGCACTCGCCTTGCGCGAATCAGA
AGAGCTGCATATCTCCATCATCGATCCCGACCAAGAGGAGCAGATTCTGC
GAAAACGCGAGGAGCTCACGCACTTGCGGGGCGGACGCGGAATTCTGCAG
AACTTGGGCTCCACCTCACCTACGCTTAGAAAGCGTAACAGAAGGTAAGT
CTACTGATTCGTCCCATTGCAGTCACCCTACTGTCGCTTCCGACCCCCAG
CTTCCAAATCTGAATCCGCGACAAACTCCTAACCTCTTGCCTATTCTCTT
CAGTACAACACGACTTCCCGAGCCACCGTCAAGGCGCTTACGCACGGGAC
TACAATCAAAAGTAGACCTGCATGCTGCCGACAAGAAAAGCAGTCCATTG
GACATGCTGACAGATGATCTCTTGATTGAGATATTCAAGCACCTACCGCG
TTTTCCACATTTACTGCGCATCCGGCAGGTCTGCCGTCGCTGGCATGCCC
TATCCTGTAGTCCACGGCTGTGGACAACACTCTCCTTTGAGGGTCATGAA
CACGTCACATCTGCAGATCTGCAGGCCCTTTGTAAGAACACACCTTCATT
AAGGAAGCTTAGGAGGCTATCACTCGCTAGAATTCACGGTGTTTCAGATC
ACGCCGTGAAGGCGATCCCACGAACCGAGTGTGCAGCAACTCTGCAATCC
GTTGATCTGTCATGGTGCAGTGGTGCTACAGATAAGAGCGTGGTTGAGTT
CTCAAGATGTCCTGGACTCCGAGAACTACGATTATCTCATTGTCGAAACG
TGACTCGGCGCAGCGTGCGGATTCTAGCTGTTCGCTGTCCTCGTCTGGAA
GTGTTAGACATGAACTGTATAAGTGGAGTCAGAGACTCACTGCTGGAAGT
TATTGGGCAAAACTGCCCGTATCTGAGAGTCCTTAACATCGCCAACGGGC
GATATGTGACGGACGAGGGTATTACAAACATTGCGAACGGCTGCCCACGG
TTGCAAGTGTTGGATCTGTCGTGGTGCAGTAGAGTTACAGACTGGTCTGT
GACCAAAATTGCTGCCAAAATGCCCAACTTGCGGGATGTTGGGTTGTCAG
AGACAAGGGTCTCAGACATTGGCATCGCAGAGTTGACACGGTGCTGCAGC
AAACTCGAAGTGTTGCATCTTGCTCGATGCATGAACGTCACGAATAACAG
CGTGGACAGCATCATTCGTTATTGCAGCAAAAGACTGACGTCTCTGAATT
TGGCAAGTTGCGCTCAAGTTACAGATCCTTACGTTGAGAAACTAATCTCT
AGGTGTGAATCGCTGGCATGCCTTGACGTATCAAAACTGCCGTGCCGAAC
CATATCGGATATGCTGGAGCGATTCACAACAGGGCGAAACATACAAGTGT
ACTTCTAATGTGTTAGAGAACGAAACGCTTGCGTGAGGGCAGGCGTAGAA
TCCACAAAGTCAACGCTGGTTTGTCGTTTTTGGTAGAAATCCTTGCAATC
AATAGGCTCGGTGAACTCCATGGTTGTGCCCAGTAGCCCGTCGTTGAACA
CGGGGGAAACATGTACATCAATACTCACACTGGCAGCAAAGGCCGCGTGA
CAATTCTCACCCAGATGAAGAGGGTGAGAAGCGGTATCTGCAATCTGCAA
TGCGAGTTAGGGGACTTCTTGAACGATGTTGGGGACTGCTTCGTGCTGAC
TGCTTTTCGCCCTTGTAGGAACATGGGATATCTGTATGGCGCCCTAATAA
TATTTCCCAGAGCTCATAGGAGATAAGACTTACTGAGGAAGCACTACTGC
GTGACTTAGCGATAAATAGAACTTTTTCCCCTGGGACGACAGGCTTATGG
CAGTTCAATTTGAAGTGGTGGTATCTACGTGTAGCGCTGAAGCATGAAAG
GTTCCCTTCGAATTGCCAGGCAGCAAGATACGCTAGCTGTCGATGCCATG
TCCATGTGTGCAATACACCGATCGTTTCGGTGCGATGCTTCGGATAACTG
TTCGTCTGTGGTATTTACTGTATCTACTGCCTCTTTGTCGGTCGCACGCT
GTTGGAGTTGGAGCGGATTATTTTAAAAACGCCGTCGTGCATGCAGCTGT
ATTAGATATAACAAACCATCGCCAGCCTCTGTTTATCGATCGACAAGGGT
GTTGCTGACAAAAGCGTTTTCTCAGCATGTCTATCTTGGCGAACTGAATC
AGCGCGATATGACATGATGCACCACCATGTAACCTGTGCAAATACGTAAA
ATACGGAATTTAGATTCTGGTCTGGCTCTTGCTAACGGGTTTGCGTGAAT
TGGTTTCTCTGCCCTGTCGGACCAACATGCTCGTACGAACGAATATCGAT
CCCAAAGCGCATCGATCCTGGTCCCCCCGACTGACAGAGAGGTTTCGACA
AAGGTTGCTGGTTGTCGTCAACAAGAGCTTGCGTTTTGGTGTGAACCCTC
TGAACCCTTTTTGAGCACTTCCCACGTCGCATTCTGCATTAGATGCACGC
GACCCTTTGAGCCACGGCGGTGAGCCACCCAGCGATCACAATGCAAAATT
TGCAGCGTCGTGAGGCGCCCCGTGCCAAGGTTACGGTGCACCACGTGTGT
TACGCACACGCCCTCCTACACAGAAACTACGTGTACAGCTTTGCAACGTC
GTGTCGTTTCAATTTTGCGCATCCACTTGAGTGTGTGTGGTTAGCCCGCT
GCTGCTGCCGCGTCATTGGAGAATGCTCATGCCTCTGCGATCGATCGGAG
GTCAAAATCGAATGTGGAGCAGTTGAGTCCAACACAAACAGGAGTCAGCT
TCGAACTCAGTACCCTTGGTACGTTCTTCGTTGAGAACGACGTTTTCTCC
CTACGCGCACATTGATCGGCCCCTAAAGTCCGGCTCAGCCTGCGCGATCG
CCTTTGATACCCTATACAATGCTCCGCCTAGTCTCCCAAAGAGTACCTCG
CGCGGGAAACTCGTTTTGGCTTCGAACTTTCTCTGCTGAAGCGTCGGGAG
TGGAACAACTGCCTAAGGCTGTCGACACTGCGGGAAGATATGCCTATGCA
CTTTACAATGCAGCGAAGAAGTCCAATTCCCTCGATGCGGTCATAACCGA
TGTAACTACCATGCAAGACATGGTTGCCAAGAATACTACTTTGAGCGAGT
TTCTCATCAACCCATCACTCCCGCGCACGGCCAAGGTTGAAGCTATCACT
GAGATCGTCAAAAAATCCGGTTTCTCCGATACCTTCTCCAAGTTTTTGAT
GGTTATGTCCGAAAACGGGCGGACCTCGGAAGCCTCGAAAGCCCTTGCAT
CCTTTCAGGACATTATTGGAGCCCTGAAAGGCGAAGTTGTTGTTAAGGTT
ACTACCACAATGCCGTTATCGGAGTGGGAGCTTGCGCTCCTCAAGAAGAA
GATTAAGCAGAGGTTCTTCGCGGGAAAGCCCGATGCGGAACTAACTGTCG
AAACTGCGATTGATGAGGAGCTTCTCGGTGGTCTAACCATTCAAGTGGGG
GATCGTTTCATGGACCTCTCTACCCGTACAGAGCTTCGTAAGTTGCAAGA
AGTTATAGCACAGGCGGTGTAA
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Coding sequence (CDS) from alignment at NODE_647_length_20364_cov_4.929216:8346..11917+

>Gcaud7843.t1 ID=Gcaud7843.t1|Name=Gcaud7843.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1017bp|location=Sequence derived from alignment at NODE_647_length_20364_cov_4.929216:8346..11917+ (Gracilaria caudata M_176_S67 male)
ATGGCCCATACCTTAGCCAGCGAGAAGGCACTCGCCTTGCGCGAATCAGA
AGAGCTGCATATCTCCATCATCGATCCCGACCAAGAGGAGCAGATTCTGC
GAAAACGCGAGGAGCTCACGCACTTGCGGGGCGGACGCGGAATTCTGCAG
AACTTGGGCTCCACCTCACCTACGCTTAGAAAGCGTAACAGAAGTACAAC
ACGACTTCCCGAGCCACCGTCAAGGCGCTTACGCACGGGACTACAATCAA
AAGTAGACCTGCATGCTGCCGACAAGAAAAGCAGTCCATTGGACATGCTG
ACAGATGATCTCTTGATTGAGATATTCAAGCACCTACCGCGTTTTCCACA
TTTACTGCGCATCCGGCAGGTCTGCCTCTCCCAAAGAGTACCTCGCGCGG
GAAACTCGTTTTGGCTTCGAACTTTCTCTGCTGAAGCGTCGGGAGTGGAA
CAACTGCCTAAGGCTGTCGACACTGCGGGAAGATATGCCTATGCACTTTA
CAATGCAGCGAAGAAGTCCAATTCCCTCGATGCGGTCATAACCGATGTAA
CTACCATGCAAGACATGGTTGCCAAGAATACTACTTTGAGCGAGTTTCTC
ATCAACCCATCACTCCCGCGCACGGCCAAGGTTGAAGCTATCACTGAGAT
CGTCAAAAAATCCGGTTTCTCCGATACCTTCTCCAAGTTTTTGATGGTTA
TGTCCGAAAACGGGCGGACCTCGGAAGCCTCGAAAGCCCTTGCATCCTTT
CAGGACATTATTGGAGCCCTGAAAGGCGAAGTTGTTGTTAAGGTTACTAC
CACAATGCCGTTATCGGAGTGGGAGCTTGCGCTCCTCAAGAAGAAGATTA
AGCAGAGGTTCTTCGCGGGAAAGCCCGATGCGGAACTAACTGTCGAAACT
GCGATTGATGAGGAGCTTCTCGGTGGTCTAACCATTCAAGTGGGGGATCG
TTTCATGGACCTCTCTACCCGTACAGAGCTTCGTAAGTTGCAAGAAGTTA
TAGCACAGGCGGTGTAA
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