Gcaud7841.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7841.t1
Unique NameGcaud7841.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length155
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_647_length_20364_cov_4.929216contigNODE_647_length_20364_cov_4.929216:3023..4519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5334.XP_003035501.1
Preferred nameVMA7
PFAMsATP-synt_F
Max annot lvl4751|Fungi
KEGG koko:K02151
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008324,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031224,GO:0032991,GO:0033176,GO:0033178,GO:0033180,GO:0034220,GO:0036442,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0045851,GO:0046961,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0090662,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1902600
Evalue5.81e-33
EggNOG OGsCOG1436@1|root,KOG3432@2759|Eukaryota,3A3I9@33154|Opisthokonta,3P3TN@4751|Fungi,3V15X@5204|Basidiomycota,229C3@155619|Agaricomycetes,3W753@5338|Agaricales
DescriptionSubunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells
COG categoryC
BiGG ReactioniMM904.YGR020C,iND750.YGR020C
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7841Gcaud7841Gracilaria caudata M_176_S67 malegeneNODE_647_length_20364_cov_4.929216 3023..4519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7841.t1Gcaud7841.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_647_length_20364_cov_4.929216 3023..4519 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7841.t1.start1Gcaud7841.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_647_length_20364_cov_4.929216 3023..3025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7841.t1.CDS1Gcaud7841.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_647_length_20364_cov_4.929216 3023..3088 +
Gcaud7841.t1.CDS2Gcaud7841.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_647_length_20364_cov_4.929216 3187..3218 +
Gcaud7841.t1.CDS3Gcaud7841.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_647_length_20364_cov_4.929216 3941..4077 +
Gcaud7841.t1.CDS4Gcaud7841.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_647_length_20364_cov_4.929216 4199..4284 +
Gcaud7841.t1.CDS5Gcaud7841.t1.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_647_length_20364_cov_4.929216 4376..4519 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7841.t1.exon1Gcaud7841.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_647_length_20364_cov_4.929216 3023..3088 +
Gcaud7841.t1.exon2Gcaud7841.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_647_length_20364_cov_4.929216 3187..3218 +
Gcaud7841.t1.exon3Gcaud7841.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_647_length_20364_cov_4.929216 3941..4077 +
Gcaud7841.t1.exon4Gcaud7841.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_647_length_20364_cov_4.929216 4199..4284 +
Gcaud7841.t1.exon5Gcaud7841.t1.exon5Gracilaria caudata M_176_S67 maleexonNODE_647_length_20364_cov_4.929216 4376..4519 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7841.t1.intron1Gcaud7841.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_647_length_20364_cov_4.929216 3089..3186 +
Gcaud7841.t1.intron2Gcaud7841.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_647_length_20364_cov_4.929216 3219..3940 +
Gcaud7841.t1.intron3Gcaud7841.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_647_length_20364_cov_4.929216 4078..4198 +
Gcaud7841.t1.intron4Gcaud7841.t1.intron4Gracilaria caudata M_176_S67 maleintronNODE_647_length_20364_cov_4.929216 4285..4375 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7841.t1.stop1Gcaud7841.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_647_length_20364_cov_4.929216 4517..4519 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7841.t1 ID=Gcaud7841.t1|Name=Gcaud7841.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=155bp
MVRLTDCGYARRRATERPVRDEKRDAAVGEAEVKIYKSRDTGFLIAVIGD
EDTTTGFLLAGIGDNQPSTGSNFFVVDPKETPVQAIEEAFKRFTEREDIA
ILLINQYIADKIRSTVTKFSMPVPAVLEIPSKEHPYDPSKDSILQRVRGM
LGSA*
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spliced messenger RNA

>Gcaud7841.t1 ID=Gcaud7841.t1|Name=Gcaud7841.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=465bp|location=Sequence derived from alignment at NODE_647_length_20364_cov_4.929216:3023..4519+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAGGTTGACAGACTGCGGCTACGCAAGGAGGCGAGCGACTGAGCG
ACCGGTTCGAGATGAGAAACGCGATGCAGCGGTGGGGGAGGCGGAAGTAA
AGATCTACAAGTCGCGCGATACCGGCTTTCTGATTGCCGTCATTGGCGAT
GAGGATACCACCACCGGCTTTCTTCTTGCTGGTATCGGCGATAATCAGCC
CTCCACTGGCTCCAATTTCTTTGTCGTTGATCCAAAGGAAACTCCTGTTC
AAGCCATTGAAGAAGCGTTCAAGAGATTCACTGAAAGAGAAGACATTGCC
ATTCTTCTCATCAACCAATACATCGCGGATAAGATTCGTTCCACCGTAAC
AAAATTCAGCATGCCAGTACCCGCAGTTCTTGAAATTCCCTCCAAAGAGC
ATCCGTACGACCCGTCGAAGGACTCCATCTTGCAGCGAGTGCGTGGAATG
CTTGGATCAGCCTAA
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protein sequence of Gcaud7841.t1

>Gcaud7841.t1 ID=Gcaud7841.t1|Name=Gcaud7841.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=155bp
MVRLTDCGYARRRATERPVRDEKRDAAVGEAEVKIYKSRDTGFLIAVIGD
EDTTTGFLLAGIGDNQPSTGSNFFVVDPKETPVQAIEEAFKRFTEREDIA
ILLINQYIADKIRSTVTKFSMPVPAVLEIPSKEHPYDPSKDSILQRVRGM
LGSA*
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mRNA from alignment at NODE_647_length_20364_cov_4.929216:3023..4519+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7841.t1 ID=Gcaud7841.t1|Name=Gcaud7841.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at NODE_647_length_20364_cov_4.929216:3023..4519+ (Gracilaria caudata M_176_S67 male)
ATGGTGAGGTTGACAGACTGCGGCTACGCAAGGAGGCGAGCGACTGAGCG
ACCGGTTCGAGATGAGGTACGCTGAGTTTTGAATTTGGTTGCGAGCGCCA
GCGCGACGGAGCTAGCGCACGACACTGCGAAAAATTCAAACGGTGCTGAC
GGCAGGGAAAAAAGAAACGCGATGCAGCGGTGGGGGAGGCGGAAGTGTGG
CGTGCACAGCGAGGCGGACAGCTGAGAACGACGACGAGCGCGAAGAAGAT
GAGCGATGAGCGTGGAGGCTGCGCAGCACAGCGCGGAGGCAGTAGCAAGC
AGCTCGCGCACGCGCGCGCCGGTGAGGTCGCTGGGGTGCGTCGGCGAAAT
ggggggggggggggggggcggaggtggTGCACAAGCAGCCGTGCGACTGC
AGTCGCGCGCGCAAGGCCAAAGTTGAACTTGAAAAAAGCACAGCAATCAA
ATGCATGCCGCGCGGCGCGCAAAAATTTGAGGGCGAGCAAAAAGCGCTCG
CGCTTTGAAATTTGAAAGAAATCACACGCGCGTACACGCGCCGCCAATGG
CGCGCGCCGCTGCCGCGCTTCAAAAAAACGGCGCATGCGTTGCTTTTTGG
CGGGACGTGTGCGGCACTTCAAAACAATTCAACCCCCTCACACGCTCCAC
ACGTGCACGCGTGTGTGCTGTAAGCACTTCTCATTGCGCCTTTGGCGACA
GCCGATGATGTCGGCCACGGGGGTCACGCGCCAGCTCCCCAACGGTTTTG
CTGGCGCAAGTCAGGTACCCTTCGTACACTTTGtctccgtcccccgttct
ccgccatccttctcgttTGCCGCTGCTCGCCAGCACCTCCGTCGCTGCAT
CCATCTCCGCCTCAACCTCGCTAGCTGCGCATCTTCGCCACTCCCACCTG
TACAAAAATGGCCGGTAGAAAGATCTACAAGTCGCGCGATACCGGCTTTC
TGATTGCCGTCATTGGCGATGAGGATACCACCACCGGCTTTCTTCTTGCT
GGTATCGGCGATAATCAGCCCTCCACTGGCTCCAATTTCTTTGTCGTTGA
TCCAAGTACGCTACATGCAAATCTCCGGTCTTGTTCATATCAACCCAACC
GTAACCAGCCCCGTTCATCCCACCCCGCTGACCTTATTTTCAAAACTGCT
GCTTGATGCTTTGCTTGCGTGCGAAGAGGAAACTCCTGTTCAAGCCATTG
AAGAAGCGTTCAAGAGATTCACTGAAAGAGAAGACATTGCCATTCTTCTC
ATCAACCAATACGTACGTCAGTCATTCGCCCACATCTTGTGCGTACTATC
ATCTTTCACCGTCGTACCTAACGCATTCGTACATGTGCCCCCTATCGTTA
TAGATCGCGGATAAGATTCGTTCCACCGTAACAAAATTCAGCATGCCAGT
ACCCGCAGTTCTTGAAATTCCCTCCAAAGAGCATCCGTACGACCCGTCGA
AGGACTCCATCTTGCAGCGAGTGCGTGGAATGCTTGGATCAGCCTAA
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Coding sequence (CDS) from alignment at NODE_647_length_20364_cov_4.929216:3023..4519+

>Gcaud7841.t1 ID=Gcaud7841.t1|Name=Gcaud7841.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=465bp|location=Sequence derived from alignment at NODE_647_length_20364_cov_4.929216:3023..4519+ (Gracilaria caudata M_176_S67 male)
ATGGTGAGGTTGACAGACTGCGGCTACGCAAGGAGGCGAGCGACTGAGCG
ACCGGTTCGAGATGAGAAACGCGATGCAGCGGTGGGGGAGGCGGAAGTAA
AGATCTACAAGTCGCGCGATACCGGCTTTCTGATTGCCGTCATTGGCGAT
GAGGATACCACCACCGGCTTTCTTCTTGCTGGTATCGGCGATAATCAGCC
CTCCACTGGCTCCAATTTCTTTGTCGTTGATCCAAAGGAAACTCCTGTTC
AAGCCATTGAAGAAGCGTTCAAGAGATTCACTGAAAGAGAAGACATTGCC
ATTCTTCTCATCAACCAATACATCGCGGATAAGATTCGTTCCACCGTAAC
AAAATTCAGCATGCCAGTACCCGCAGTTCTTGAAATTCCCTCCAAAGAGC
ATCCGTACGACCCGTCGAAGGACTCCATCTTGCAGCGAGTGCGTGGAATG
CTTGGATCAGCCTAA
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