Gcaud7838.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7838.t1
Unique NameGcaud7838.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length576
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1945_length_7517_cov_3.978050contigNODE_1945_length_7517_cov_3.978050:5729..7456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003288826.1
PFAMsPIP5K
Max annot lvl554915|Amoebozoa
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
GOsGO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006935,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009605,GO:0009893,GO:0009966,GO:0009987,GO:0010562,GO:0010604,GO:0010646,GO:0016301,GO:0016307,GO:0016308,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019220,GO:0019222,GO:0019637,GO:0023051,GO:0030258,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0033674,GO:0040011,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0043085,GO:0043327,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0045017,GO:0045859,GO:0045860,GO:0045937,GO:0046474,GO:0046486,GO:0046488,GO:0046578,GO:0046834,GO:0046854,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051056,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0090407,GO:1901576,GO:1902531,GO:1902633,GO:1902635
Evalue2.58e-46
EggNOG OGsCOG5253@1|root,KOG0229@2759|Eukaryota,3X8Q4@554915|Amoebozoa
EC2.7.1.68
DescriptionPhosphatidylinositol-4-phosphate 5-Kinase
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7838Gcaud7838Gracilaria caudata M_176_S67 malegeneNODE_1945_length_7517_cov_3.978050 5729..7456 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7838.t1.stop1Gcaud7838.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1945_length_7517_cov_3.978050 5729..5731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7838.t1.CDS1Gcaud7838.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1945_length_7517_cov_3.978050 5729..7456 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7838.t1.exon1Gcaud7838.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1945_length_7517_cov_3.978050 5729..7456 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7838.t1.start1Gcaud7838.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1945_length_7517_cov_3.978050 7454..7456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7838.t1Gcaud7838.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1945_length_7517_cov_3.978050 5729..7456 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7838.t1 ID=Gcaud7838.t1|Name=Gcaud7838.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=576bp
MGAANAHDPPPNSSNSLPLALDRVASPTTPPPPQGPSDPPRSTPTELRLP
IDILALEHAPSAHSSMSPQPDDSSRKPPHSAPPALLHARSNRTTMHTRRP
SGGGGLTASSHFSKPIEMPPEAAKARLEADAVPANRATLERVQSGNIDLA
QKLSGSGGGMTIKKHVAKFPRIGHGHRKKVKDGEVVFKGHSNWEIVMSIQ
FGLKFTSELLDDATDCEPTPEDYEESLAFDFNPNEDRSSIELNTFARWVH
PAPYVYKLIRQRFGVEENDFLDSTCAESRVRELPTPGRSGALFYITDDEK
YFMKTIQQVEERMLMSMLPSYYQHVANNPRTLLTKYLAHFSVKTRRDRHI
RMVVMASIFDDRVFIDKKYDLKGSTFKRYASEEQLKSQNVTLKDQDLKKP
IFFRPEQLDQIMKQLEKDSAYLESHHVMDYSLLVGLSHMLPDENPYFRAE
FGPTEENAPYYVGYQYDDQGRKSGIRVCMGIIDFLQRFRFRKRMEYGARI
IQSCSCSAASVAPPHLYRDRFMSFLREKFLPDPNLDVSKLESTVIFPPHA
VDENEDTSGSQENSGNAKDKSDGDS*
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spliced messenger RNA

>Gcaud7838.t1 ID=Gcaud7838.t1|Name=Gcaud7838.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at NODE_1945_length_7517_cov_3.978050:5729..7456- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCCGCCAATGCTCACGACCCACCCCCCAACTCCTCCAACTCGCT
CCCCCTTGCGCTCGACCGCGTCGCTTCCCCAACAACCCCTCCTCCACCCC
AAGGCCCGTCCGACCCTCCACGCTCCACGCCCACTGAGCTTCGCCTCCCT
ATAGACATTCTCGCCCTCGAACACGCCCCCTCCGCTCATTCCTCCATGTC
ACCTCAGCCAGACGACAGTTCCAGAAAGCCTCCGCACTCCGCTCCTCCAG
CTCTGTTGCACGCCCGAAGCAACCGCACCACCATGCATACCCGTCGCCCG
AGCGGTGGAGGCGGACTCACCGCTTCCAGCCATTTCTCCAAGCCCATCGA
GATGCCGCCCGAGGCGGCAAAGGCGCGTCTGGAGGCCGACGCAGTTCCGG
CCAATCGCGCAACCCTGGAGCGCGTGCAGTCTGGAAACATCGATCTTGCC
CAGAAGCTCAGCGGAAGTGGCGGCGGCATGACCATCAAGAAGCACGTCGC
CAAGTTTCCGCGAATCGGACATGGCCATCGCAAGAAGGTCAAGGACGGAG
AGGTCGTTTTCAAGGGTCATTCCAACTGGGAGATTGTCATGTCCATCCAG
TTTGGCTTAAAGTTTACGTCAGAACTGCTTGACGATGCTACCGATTGTGA
GCCCACACCCGAAGACTACGAAGAAAGTCTCGCTTTCGATTTCAATCCAA
ACGAGGATCGCTCATCCATTGAACTCAACACTTTTGCCCGGTGGGTACAC
CCGGCCCCTTATGTGTATAAACTCATTCGCCAACGTTTTGGAGTCGAAGA
GAACGATTTTCTCGATTCCACATGCGCTGAATCCAGAGTGCGCGAGCTTC
CAACTCCGGGAAGGTCCGGCGCGCTGTTTTACATCACTGATGATGAAAAG
TACTTCATGAAAACCATTCAACAAGTGGAGGAGAGAATGTTAATGTCTAT
GCTTCCATCATATTACCAGCACGTTGCAAACAACCCACGCACCCTGTTGA
CCAAATACTTGGCGCACTTCAGCGTGAAGACTCGTAGAGATCGTCATATC
CGCATGGTCGTCATGGCCTCCATTTTCGACGATAGGGTGTTTATCGACAA
GAAGTACGATCTCAAGGGCTCTACTTTTAAGCGCTACGCATCTGAGGAGC
AGCTCAAGAGCCAGAACGTAACCCTGAAAGACCAAGACCTTAAGAAGCCC
ATTTTCTTCAGACCAGAGCAACTCGACCAAATAATGAAACAACTTGAAAA
GGACTCCGCCTATTTGGAGTCGCATCACGTCATGGACTACTCATTATTGG
TTGGACTCTCACATATGCTCCCGGACGAGAACCCCTACTTCAGAGCAGAA
TTTGGTCCCACAGAAGAAAACGCACCGTACTATGTTGGCTATCAATATGA
TGACCAGGGTCGTAAATCAGGCATTCGTGTTTGCATGGGTATCATTGACT
TTCTGCAACGCTTTCGTTTTAGAAAACGTATGGAGTATGGCGCTCGTATT
ATTCAAAGCTGTTCCTGCTCGGCGGCGTCAGTCGCACCACCGCATTTGTA
CAGGGACAGATTCATGTCGTTCCTGCGAGAGAAATTTTTGCCAGATCCCA
ATCTGGATGTATCAAAACTAGAGTCTACTGTCATTTTCCCGCCCCATGCT
GTGGATGAGAACGAGGATACTTCGGGAAGCCAGGAAAATAGCGGAAATGC
GAAGGACAAAAGCGACGGCGACTCATAA
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protein sequence of Gcaud7838.t1

>Gcaud7838.t1 ID=Gcaud7838.t1|Name=Gcaud7838.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=576bp
MGAANAHDPPPNSSNSLPLALDRVASPTTPPPPQGPSDPPRSTPTELRLP
IDILALEHAPSAHSSMSPQPDDSSRKPPHSAPPALLHARSNRTTMHTRRP
SGGGGLTASSHFSKPIEMPPEAAKARLEADAVPANRATLERVQSGNIDLA
QKLSGSGGGMTIKKHVAKFPRIGHGHRKKVKDGEVVFKGHSNWEIVMSIQ
FGLKFTSELLDDATDCEPTPEDYEESLAFDFNPNEDRSSIELNTFARWVH
PAPYVYKLIRQRFGVEENDFLDSTCAESRVRELPTPGRSGALFYITDDEK
YFMKTIQQVEERMLMSMLPSYYQHVANNPRTLLTKYLAHFSVKTRRDRHI
RMVVMASIFDDRVFIDKKYDLKGSTFKRYASEEQLKSQNVTLKDQDLKKP
IFFRPEQLDQIMKQLEKDSAYLESHHVMDYSLLVGLSHMLPDENPYFRAE
FGPTEENAPYYVGYQYDDQGRKSGIRVCMGIIDFLQRFRFRKRMEYGARI
IQSCSCSAASVAPPHLYRDRFMSFLREKFLPDPNLDVSKLESTVIFPPHA
VDENEDTSGSQENSGNAKDKSDGDS*
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mRNA from alignment at NODE_1945_length_7517_cov_3.978050:5729..7456-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7838.t1 ID=Gcaud7838.t1|Name=Gcaud7838.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at NODE_1945_length_7517_cov_3.978050:5729..7456- (Gracilaria caudata M_176_S67 male)
ATGGGTGCCGCCAATGCTCACGACCCACCCCCCAACTCCTCCAACTCGCT
CCCCCTTGCGCTCGACCGCGTCGCTTCCCCAACAACCCCTCCTCCACCCC
AAGGCCCGTCCGACCCTCCACGCTCCACGCCCACTGAGCTTCGCCTCCCT
ATAGACATTCTCGCCCTCGAACACGCCCCCTCCGCTCATTCCTCCATGTC
ACCTCAGCCAGACGACAGTTCCAGAAAGCCTCCGCACTCCGCTCCTCCAG
CTCTGTTGCACGCCCGAAGCAACCGCACCACCATGCATACCCGTCGCCCG
AGCGGTGGAGGCGGACTCACCGCTTCCAGCCATTTCTCCAAGCCCATCGA
GATGCCGCCCGAGGCGGCAAAGGCGCGTCTGGAGGCCGACGCAGTTCCGG
CCAATCGCGCAACCCTGGAGCGCGTGCAGTCTGGAAACATCGATCTTGCC
CAGAAGCTCAGCGGAAGTGGCGGCGGCATGACCATCAAGAAGCACGTCGC
CAAGTTTCCGCGAATCGGACATGGCCATCGCAAGAAGGTCAAGGACGGAG
AGGTCGTTTTCAAGGGTCATTCCAACTGGGAGATTGTCATGTCCATCCAG
TTTGGCTTAAAGTTTACGTCAGAACTGCTTGACGATGCTACCGATTGTGA
GCCCACACCCGAAGACTACGAAGAAAGTCTCGCTTTCGATTTCAATCCAA
ACGAGGATCGCTCATCCATTGAACTCAACACTTTTGCCCGGTGGGTACAC
CCGGCCCCTTATGTGTATAAACTCATTCGCCAACGTTTTGGAGTCGAAGA
GAACGATTTTCTCGATTCCACATGCGCTGAATCCAGAGTGCGCGAGCTTC
CAACTCCGGGAAGGTCCGGCGCGCTGTTTTACATCACTGATGATGAAAAG
TACTTCATGAAAACCATTCAACAAGTGGAGGAGAGAATGTTAATGTCTAT
GCTTCCATCATATTACCAGCACGTTGCAAACAACCCACGCACCCTGTTGA
CCAAATACTTGGCGCACTTCAGCGTGAAGACTCGTAGAGATCGTCATATC
CGCATGGTCGTCATGGCCTCCATTTTCGACGATAGGGTGTTTATCGACAA
GAAGTACGATCTCAAGGGCTCTACTTTTAAGCGCTACGCATCTGAGGAGC
AGCTCAAGAGCCAGAACGTAACCCTGAAAGACCAAGACCTTAAGAAGCCC
ATTTTCTTCAGACCAGAGCAACTCGACCAAATAATGAAACAACTTGAAAA
GGACTCCGCCTATTTGGAGTCGCATCACGTCATGGACTACTCATTATTGG
TTGGACTCTCACATATGCTCCCGGACGAGAACCCCTACTTCAGAGCAGAA
TTTGGTCCCACAGAAGAAAACGCACCGTACTATGTTGGCTATCAATATGA
TGACCAGGGTCGTAAATCAGGCATTCGTGTTTGCATGGGTATCATTGACT
TTCTGCAACGCTTTCGTTTTAGAAAACGTATGGAGTATGGCGCTCGTATT
ATTCAAAGCTGTTCCTGCTCGGCGGCGTCAGTCGCACCACCGCATTTGTA
CAGGGACAGATTCATGTCGTTCCTGCGAGAGAAATTTTTGCCAGATCCCA
ATCTGGATGTATCAAAACTAGAGTCTACTGTCATTTTCCCGCCCCATGCT
GTGGATGAGAACGAGGATACTTCGGGAAGCCAGGAAAATAGCGGAAATGC
GAAGGACAAAAGCGACGGCGACTCATAA
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Coding sequence (CDS) from alignment at NODE_1945_length_7517_cov_3.978050:5729..7456-

>Gcaud7838.t1 ID=Gcaud7838.t1|Name=Gcaud7838.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1728bp|location=Sequence derived from alignment at NODE_1945_length_7517_cov_3.978050:5729..7456- (Gracilaria caudata M_176_S67 male)
ATGGGTGCCGCCAATGCTCACGACCCACCCCCCAACTCCTCCAACTCGCT
CCCCCTTGCGCTCGACCGCGTCGCTTCCCCAACAACCCCTCCTCCACCCC
AAGGCCCGTCCGACCCTCCACGCTCCACGCCCACTGAGCTTCGCCTCCCT
ATAGACATTCTCGCCCTCGAACACGCCCCCTCCGCTCATTCCTCCATGTC
ACCTCAGCCAGACGACAGTTCCAGAAAGCCTCCGCACTCCGCTCCTCCAG
CTCTGTTGCACGCCCGAAGCAACCGCACCACCATGCATACCCGTCGCCCG
AGCGGTGGAGGCGGACTCACCGCTTCCAGCCATTTCTCCAAGCCCATCGA
GATGCCGCCCGAGGCGGCAAAGGCGCGTCTGGAGGCCGACGCAGTTCCGG
CCAATCGCGCAACCCTGGAGCGCGTGCAGTCTGGAAACATCGATCTTGCC
CAGAAGCTCAGCGGAAGTGGCGGCGGCATGACCATCAAGAAGCACGTCGC
CAAGTTTCCGCGAATCGGACATGGCCATCGCAAGAAGGTCAAGGACGGAG
AGGTCGTTTTCAAGGGTCATTCCAACTGGGAGATTGTCATGTCCATCCAG
TTTGGCTTAAAGTTTACGTCAGAACTGCTTGACGATGCTACCGATTGTGA
GCCCACACCCGAAGACTACGAAGAAAGTCTCGCTTTCGATTTCAATCCAA
ACGAGGATCGCTCATCCATTGAACTCAACACTTTTGCCCGGTGGGTACAC
CCGGCCCCTTATGTGTATAAACTCATTCGCCAACGTTTTGGAGTCGAAGA
GAACGATTTTCTCGATTCCACATGCGCTGAATCCAGAGTGCGCGAGCTTC
CAACTCCGGGAAGGTCCGGCGCGCTGTTTTACATCACTGATGATGAAAAG
TACTTCATGAAAACCATTCAACAAGTGGAGGAGAGAATGTTAATGTCTAT
GCTTCCATCATATTACCAGCACGTTGCAAACAACCCACGCACCCTGTTGA
CCAAATACTTGGCGCACTTCAGCGTGAAGACTCGTAGAGATCGTCATATC
CGCATGGTCGTCATGGCCTCCATTTTCGACGATAGGGTGTTTATCGACAA
GAAGTACGATCTCAAGGGCTCTACTTTTAAGCGCTACGCATCTGAGGAGC
AGCTCAAGAGCCAGAACGTAACCCTGAAAGACCAAGACCTTAAGAAGCCC
ATTTTCTTCAGACCAGAGCAACTCGACCAAATAATGAAACAACTTGAAAA
GGACTCCGCCTATTTGGAGTCGCATCACGTCATGGACTACTCATTATTGG
TTGGACTCTCACATATGCTCCCGGACGAGAACCCCTACTTCAGAGCAGAA
TTTGGTCCCACAGAAGAAAACGCACCGTACTATGTTGGCTATCAATATGA
TGACCAGGGTCGTAAATCAGGCATTCGTGTTTGCATGGGTATCATTGACT
TTCTGCAACGCTTTCGTTTTAGAAAACGTATGGAGTATGGCGCTCGTATT
ATTCAAAGCTGTTCCTGCTCGGCGGCGTCAGTCGCACCACCGCATTTGTA
CAGGGACAGATTCATGTCGTTCCTGCGAGAGAAATTTTTGCCAGATCCCA
ATCTGGATGTATCAAAACTAGAGTCTACTGTCATTTTCCCGCCCCATGCT
GTGGATGAGAACGAGGATACTTCGGGAAGCCAGGAAAATAGCGGAAATGC
GAAGGACAAAAGCGACGGCGACTCATAA
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