Gcaud7817.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7817.t1
Unique Name	Gcaud7817.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	464

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_213_length_36751_cov_4.280933	contig	NODE_213_length_36751_cov_4.280933:29449..30840 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1056512.D515_01378
PFAMs	FG-GAP_2
Max annot lvl	135623\|Vibrionales
Evalue	3.82e-29
EggNOG OGs	COG2304@1\|root,COG2304@2\|Bacteria,1PDQV@1224\|Proteobacteria,1RPGD@1236\|Gammaproteobacteria,1XYT2@135623\|Vibrionales
Description	Integrin alpha (beta-propellor repeats).
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7817	Gcaud7817	Gracilaria caudata M_176_S67 male	gene	NODE_213_length_36751_cov_4.280933 29449..30840 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7817.t1.stop1	Gcaud7817.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_213_length_36751_cov_4.280933 29449..29451 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7817.t1.CDS1	Gcaud7817.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_213_length_36751_cov_4.280933 29449..30840 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7817.t1.exon1	Gcaud7817.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_213_length_36751_cov_4.280933 29449..30840 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7817.t1.start1	Gcaud7817.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_213_length_36751_cov_4.280933 30838..30840 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7817.t1	Gcaud7817.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_213_length_36751_cov_4.280933 29449..30840 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_213_length_36751_cov_4.280933:29449..30840-
coding sequence from alignment at NODE_213_length_36751_cov_4.280933:29449..30840-

mRNA sequence

>Gcaud7817.t1 ID=Gcaud7817.t1|Name=Gcaud7817.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=464bp
MHYVIASFLLLSFSALASASRLFLQPPAEDRTNKLKFGQSTCISQDGLRI
VVGANGYDRYRGALYIYDLVTAPGDHASHWQRTTLSANGTEHAEERKPRE
MRVLPRGSALGFSCSMSADARRLIIGAPGHDTQRGAVFVFAYSSSQSRWV
EVQRLNTHDARPGDSFGWAVVVNHDCTVLATSARGKKANNGEVFAYDCEK
GCTDCRLNSRISAPDYTDSTGPRGIRIRNNFGTSMSMNARGDMLMVSSIG
FDDERGAVYIFRRAGADEEWKLAQRVLSPKARQRGYFGYRLAMDHEADHI
VIGADGEDEYTGAVYVFHKKKDKYVFAYEINAEEAEEEDNFGASIAMSGN
GNTLIIGAPGANRGKLKDHGLVYVYEKVKGEKNDGWELAETVSLPVEHSS
EGNYFGWNVDISANGRKYVSSAPESYGGSGLVAFGDFDVSGRSMMNSASL
IHDEIESGAKEEL*

spliced messenger RNA

>Gcaud7817.t1 ID=Gcaud7817.t1|Name=Gcaud7817.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:29449..30840- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTACGTGATTGCTTCCTTCCTGCTGCTGTCGTTTAGCGCCTTGGC
ATCTGCCAGTCGCTTGTTTCTGCAACCGCCCGCGGAGGATCGGACAAACA
AGCTTAAGTTCGGTCAGAGTACTTGCATCAGTCAAGATGGACTTCGCATT
GTGGTGGGAGCGAACGGCTACGATCGATACAGAGGTGCTCTGTATATCTA
CGACCTCGTCACAGCGCCCGGTGATCATGCCAGTCATTGGCAGCGTACAA
CACTCTCGGCAAATGGAACCGAGCACGCAGAGGAAAGGAAGCCGCGGGAA
ATGAGAGTGCTACCACGGGGAAGCGCGCTAGGGTTTTCTTGTTCTATGTC
TGCTGATGCGAGAAGATTGATCATCGGTGCGCCTGGACATGATACACAAC
GTGGCGCCGTATTCGTGTTTGCGTATTCGTCATCGCAGAGCAGATGGGTG
GAAGTGCAACGTCTGAACACACATGATGCACGGCCTGGAGACTCTTTTGG
GTGGGCTGTGGTCGTGAATCATGACTGCACTGTGTTGGCGACTAGTGCAA
GGGGAAAAAAGGCCAACAATGGAGAAGTTTTTGCGTATGATTGCGAGAAG
GGGTGCACAGATTGCCGACTGAATTCTCGTATTAGTGCGCCGGATTACAC
AGACAGCACTGGGCCACGAGGAATTCGCATCCGGAATAACTTTGGCACGA
GTATGAGCATGAACGCGAGAGGCGACATGTTGATGGTGAGCAGCATCGGC
TTTGATGATGAAAGGGGCGCCGTTTATATATTTAGACGCGCTGGTGCGGA
TGAGGAGTGGAAACTGGCGCAGCGTGTTCTGTCACCAAAGGCGCGGCAAC
GTGGGTACTTTGGGTATCGACTTGCCATGGATCACGAGGCAGATCACATT
GTCATTGGAGCGGATGGAGAAGATGAATACACGGGGGCTGTGTATGTGTT
TCACAAAAAGAAGGACAAGTACGTATTCGCATATGAAATTAATGCTGAAG
AGGCGGAAGAGGAGGACAACTTTGGGGCATCTATTGCGATGTCCGGGAAT
GGCAACACGCTGATTATTGGTGCTCCGGGCGCAAATAGGGGCAAGCTGAA
GGACCATGGACTTGTGTATGTGTACGAAAAGGTGAAGGGAGAGAAGAACG
ACGGGTGGGAGCTGGCGGAAACGGTGTCGCTACCGGTGGAGCATTCGTCG
GAGGGCAACTACTTTGGATGGAATGTAGATATTAGCGCGAATGGGAGGAA
ATATGTGAGTAGCGCACCTGAATCATACGGCGGCAGCGGACTTGTTGCGT
TTGGAGATTTTGATGTTTCCGGAAGAAGTATGATGAATTCTGCATCGCTG
ATTCATGACGAGATTGAAAGTGGCGCGAAGGAAGAGCTGTAA

protein sequence of Gcaud7817.t1

>Gcaud7817.t1 ID=Gcaud7817.t1|Name=Gcaud7817.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=464bp
MHYVIASFLLLSFSALASASRLFLQPPAEDRTNKLKFGQSTCISQDGLRI
VVGANGYDRYRGALYIYDLVTAPGDHASHWQRTTLSANGTEHAEERKPRE
MRVLPRGSALGFSCSMSADARRLIIGAPGHDTQRGAVFVFAYSSSQSRWV
EVQRLNTHDARPGDSFGWAVVVNHDCTVLATSARGKKANNGEVFAYDCEK
GCTDCRLNSRISAPDYTDSTGPRGIRIRNNFGTSMSMNARGDMLMVSSIG
FDDERGAVYIFRRAGADEEWKLAQRVLSPKARQRGYFGYRLAMDHEADHI
VIGADGEDEYTGAVYVFHKKKDKYVFAYEINAEEAEEEDNFGASIAMSGN
GNTLIIGAPGANRGKLKDHGLVYVYEKVKGEKNDGWELAETVSLPVEHSS
EGNYFGWNVDISANGRKYVSSAPESYGGSGLVAFGDFDVSGRSMMNSASL
IHDEIESGAKEEL*

mRNA from alignment at NODE_213_length_36751_cov_4.280933:29449..30840-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7817.t1 ID=Gcaud7817.t1|Name=Gcaud7817.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:29449..30840- (Gracilaria caudata M_176_S67 male)
ATGCATTACGTGATTGCTTCCTTCCTGCTGCTGTCGTTTAGCGCCTTGGC
ATCTGCCAGTCGCTTGTTTCTGCAACCGCCCGCGGAGGATCGGACAAACA
AGCTTAAGTTCGGTCAGAGTACTTGCATCAGTCAAGATGGACTTCGCATT
GTGGTGGGAGCGAACGGCTACGATCGATACAGAGGTGCTCTGTATATCTA
CGACCTCGTCACAGCGCCCGGTGATCATGCCAGTCATTGGCAGCGTACAA
CACTCTCGGCAAATGGAACCGAGCACGCAGAGGAAAGGAAGCCGCGGGAA
ATGAGAGTGCTACCACGGGGAAGCGCGCTAGGGTTTTCTTGTTCTATGTC
TGCTGATGCGAGAAGATTGATCATCGGTGCGCCTGGACATGATACACAAC
GTGGCGCCGTATTCGTGTTTGCGTATTCGTCATCGCAGAGCAGATGGGTG
GAAGTGCAACGTCTGAACACACATGATGCACGGCCTGGAGACTCTTTTGG
GTGGGCTGTGGTCGTGAATCATGACTGCACTGTGTTGGCGACTAGTGCAA
GGGGAAAAAAGGCCAACAATGGAGAAGTTTTTGCGTATGATTGCGAGAAG
GGGTGCACAGATTGCCGACTGAATTCTCGTATTAGTGCGCCGGATTACAC
AGACAGCACTGGGCCACGAGGAATTCGCATCCGGAATAACTTTGGCACGA
GTATGAGCATGAACGCGAGAGGCGACATGTTGATGGTGAGCAGCATCGGC
TTTGATGATGAAAGGGGCGCCGTTTATATATTTAGACGCGCTGGTGCGGA
TGAGGAGTGGAAACTGGCGCAGCGTGTTCTGTCACCAAAGGCGCGGCAAC
GTGGGTACTTTGGGTATCGACTTGCCATGGATCACGAGGCAGATCACATT
GTCATTGGAGCGGATGGAGAAGATGAATACACGGGGGCTGTGTATGTGTT
TCACAAAAAGAAGGACAAGTACGTATTCGCATATGAAATTAATGCTGAAG
AGGCGGAAGAGGAGGACAACTTTGGGGCATCTATTGCGATGTCCGGGAAT
GGCAACACGCTGATTATTGGTGCTCCGGGCGCAAATAGGGGCAAGCTGAA
GGACCATGGACTTGTGTATGTGTACGAAAAGGTGAAGGGAGAGAAGAACG
ACGGGTGGGAGCTGGCGGAAACGGTGTCGCTACCGGTGGAGCATTCGTCG
GAGGGCAACTACTTTGGATGGAATGTAGATATTAGCGCGAATGGGAGGAA
ATATGTGAGTAGCGCACCTGAATCATACGGCGGCAGCGGACTTGTTGCGT
TTGGAGATTTTGATGTTTCCGGAAGAAGTATGATGAATTCTGCATCGCTG
ATTCATGACGAGATTGAAAGTGGCGCGAAGGAAGAGCTGTAA

Coding sequence (CDS) from alignment at NODE_213_length_36751_cov_4.280933:29449..30840-

>Gcaud7817.t1 ID=Gcaud7817.t1|Name=Gcaud7817.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1392bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:29449..30840- (Gracilaria caudata M_176_S67 male)
ATGCATTACGTGATTGCTTCCTTCCTGCTGCTGTCGTTTAGCGCCTTGGC
ATCTGCCAGTCGCTTGTTTCTGCAACCGCCCGCGGAGGATCGGACAAACA
AGCTTAAGTTCGGTCAGAGTACTTGCATCAGTCAAGATGGACTTCGCATT
GTGGTGGGAGCGAACGGCTACGATCGATACAGAGGTGCTCTGTATATCTA
CGACCTCGTCACAGCGCCCGGTGATCATGCCAGTCATTGGCAGCGTACAA
CACTCTCGGCAAATGGAACCGAGCACGCAGAGGAAAGGAAGCCGCGGGAA
ATGAGAGTGCTACCACGGGGAAGCGCGCTAGGGTTTTCTTGTTCTATGTC
TGCTGATGCGAGAAGATTGATCATCGGTGCGCCTGGACATGATACACAAC
GTGGCGCCGTATTCGTGTTTGCGTATTCGTCATCGCAGAGCAGATGGGTG
GAAGTGCAACGTCTGAACACACATGATGCACGGCCTGGAGACTCTTTTGG
GTGGGCTGTGGTCGTGAATCATGACTGCACTGTGTTGGCGACTAGTGCAA
GGGGAAAAAAGGCCAACAATGGAGAAGTTTTTGCGTATGATTGCGAGAAG
GGGTGCACAGATTGCCGACTGAATTCTCGTATTAGTGCGCCGGATTACAC
AGACAGCACTGGGCCACGAGGAATTCGCATCCGGAATAACTTTGGCACGA
GTATGAGCATGAACGCGAGAGGCGACATGTTGATGGTGAGCAGCATCGGC
TTTGATGATGAAAGGGGCGCCGTTTATATATTTAGACGCGCTGGTGCGGA
TGAGGAGTGGAAACTGGCGCAGCGTGTTCTGTCACCAAAGGCGCGGCAAC
GTGGGTACTTTGGGTATCGACTTGCCATGGATCACGAGGCAGATCACATT
GTCATTGGAGCGGATGGAGAAGATGAATACACGGGGGCTGTGTATGTGTT
TCACAAAAAGAAGGACAAGTACGTATTCGCATATGAAATTAATGCTGAAG
AGGCGGAAGAGGAGGACAACTTTGGGGCATCTATTGCGATGTCCGGGAAT
GGCAACACGCTGATTATTGGTGCTCCGGGCGCAAATAGGGGCAAGCTGAA
GGACCATGGACTTGTGTATGTGTACGAAAAGGTGAAGGGAGAGAAGAACG
ACGGGTGGGAGCTGGCGGAAACGGTGTCGCTACCGGTGGAGCATTCGTCG
GAGGGCAACTACTTTGGATGGAATGTAGATATTAGCGCGAATGGGAGGAA
ATATGTGAGTAGCGCACCTGAATCATACGGCGGCAGCGGACTTGTTGCGT
TTGGAGATTTTGATGTTTCCGGAAGAAGTATGATGAATTCTGCATCGCTG
ATTCATGACGAGATTGAAAGTGGCGCGAAGGAAGAGCTGTAA